Conservation of cofitness between BT0704 and BT3918 in Bacteroides thetaiotaomicron VPI-5482

96 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bacteroides thetaiotaomicron VPI-5482 1.0 BT0704 phosphoribosylglycinamide formyltransferase 2 (NCBI ptt file) 1.0 BT3918 pyridoxal phosphate biosynthetic protein pdxJ (NCBI ptt file) 0.27 4
Bacteroides ovatus ATCC 8483 0.97 BACOVA_02411 phosphoribosylglycinamide formyltransferase 2 0.97 BACOVA_01142 pyridoxine 5'-phosphate synthase 0.53 4
Bacteroides stercoris CC31F 0.95 HMPREF1181_RS16250 formate-dependent phosphoribosylglycinamide formyltransferase 0.93 HMPREF1181_RS06645 pyridoxine 5'-phosphate synthase — —
Phocaeicola dorei CL03T12C01 0.88 ABI39_RS14185 formate-dependent phosphoribosylglycinamide formyltransferase 0.87 ABI39_RS02500 pyridoxine 5'-phosphate synthase 0.37 54
Phocaeicola vulgatus CL09T03C04 0.88 HMPREF1058_RS17920 formate-dependent phosphoribosylglycinamide formyltransferase 0.87 HMPREF1058_RS08325 pyridoxine 5'-phosphate synthase low > 67
Synechococcus elongatus PCC 7942 0.54 Synpcc7942_0588 purT phosphoribosylglycinamide formyltransferase 2 0.28 Synpcc7942_1194 pdxJ pyridoxal phosphate biosynthetic protein PdxJ — —
Azospirillum sp. SherDot2 0.52 MPMX19_05086 Formate-dependent phosphoribosylglycinamide formyltransferase 0.30 MPMX19_00840 Pyridoxine 5'-phosphate synthase low > 112
Azospirillum brasilense Sp245 0.52 AZOBR_RS29810 phosphoribosylglycinamide formyltransferase 0.30 AZOBR_RS22055 pyridoxine 5'-phosphate synthase low > 97
Sphingomonas koreensis DSMZ 15582 0.51 Ga0059261_3309 formate-dependent phosphoribosylglycinamide formyltransferase (EC 6.3.4.-) 0.27 Ga0059261_2011 pyridoxine 5'-phosphate synthase — —
Marinobacter adhaerens HP15 0.48 HP15_1245 phosphoribosylglycinamide formyltransferase 2 0.31 HP15_787 pyridoxal phosphate biosynthetic protein PdxJ — —
Kangiella aquimarina DSM 16071 0.48 B158DRAFT_2254 formate-dependent phosphoribosylglycinamide formyltransferase (EC 6.3.4.-) 0.32 B158DRAFT_2190 pyridoxine 5'-phosphate synthase — —
Pseudomonas fluorescens FW300-N2E2 0.48 Pf6N2E2_5444 Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) 0.30 Pf6N2E2_5429 Pyridoxine 5'-phosphate synthase (EC 2.6.99.2) — —
Pseudomonas fluorescens FW300-N2C3 0.48 AO356_17605 phosphoribosylglycinamide formyltransferase 0.30 AO356_17510 pyridoxine 5'-phosphate synthase — —
Pseudomonas sp. RS175 0.47 PFR28_03502 Formate-dependent phosphoribosylglycinamide formyltransferase 0.30 PFR28_03520 'Pyridoxine 5'-phosphate synthase' transl_table=11 — —
Desulfovibrio vulgaris Miyazaki F 0.47 DvMF_2756 purT phosphoribosylglycinamide formyltransferase 2 (RefSeq) 0.28 DvMF_0281 pyridoxine 5'-phosphate synthase (RefSeq) low > 51
Pseudomonas stutzeri RCH2 0.47 Psest_3137 phosphoribosylglycinamide formyltransferase 2 0.32 Psest_3089 pyridoxine 5'-phosphate synthase — —
Pseudomonas fluorescens FW300-N1B4 0.47 Pf1N1B4_879 Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) 0.30 Pf1N1B4_889 Pyridoxine 5'-phosphate synthase (EC 2.6.99.2) — —
Pseudomonas simiae WCS417 0.46 PS417_22945 phosphoribosylglycinamide formyltransferase 0.30 PS417_05205 pyridoxine 5'-phosphate synthase — —
Escherichia fergusonii Becca 0.46 EFB2_02094 Formate-dependent phosphoribosylglycinamide formyltransferase 0.33 EFB2_01332 Pyridoxine 5'-phosphate synthase low > 86
Pseudomonas fluorescens SBW25-INTG 0.46 PFLU_RS24605 formate-dependent phosphoribosylglycinamide formyltransferase 0.30 PFLU_RS05275 pyridoxine 5'-phosphate synthase — —
Pseudomonas fluorescens GW456-L13 0.46 PfGW456L13_4820 Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) 0.30 PfGW456L13_4837 Pyridoxine 5'-phosphate synthase (EC 2.6.99.2) — —
Pseudomonas fluorescens SBW25 0.46 PFLU_RS24605 formate-dependent phosphoribosylglycinamide formyltransferase 0.30 PFLU_RS05275 pyridoxine 5'-phosphate synthase — —
Pseudomonas fluorescens FW300-N2E3 0.46 AO353_04410 phosphoribosylglycinamide formyltransferase 0.30 AO353_04495 pyridoxine 5'-phosphate synthase — —
Escherichia coli ECOR38 0.46 HEPCGN_04755 purT formate-dependent phosphoribosylglycinamide formyltransferase 0.33 HEPCGN_20570 pdxJ pyridoxine 5'-phosphate synthase low > 85
Pseudomonas syringae pv. syringae B728a 0.46 Psyr_1277 formate-dependent phosphoribosylglycinamide formyltransferase 0.29 Psyr_3948 pyridoxine 5'-phosphate synthase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.46 Psyr_1277 formate-dependent phosphoribosylglycinamide formyltransferase 0.29 Psyr_3948 pyridoxine 5'-phosphate synthase — —
Desulfovibrio vulgaris Hildenborough JW710 0.46 DVU0723 purT phosphoribosylglycinamide formyltransferase 2 (TIGR) 0.29 DVU1908 pdxJ pyridoxal phosphate biosynthetic protein PdxJ (TIGR) low > 55
Escherichia coli BL21 0.46 ECD_01820 phosphoribosylglycinamide formyltransferase 2 0.33 ECD_02458 pyridoxine 5'-phosphate synthase — —
Escherichia coli ECRC62 0.46 BNILDI_15655 purT formate-dependent phosphoribosylglycinamide formyltransferase 0.33 BNILDI_11900 pdxJ pyridoxine 5'-phosphate synthase — —
Pseudomonas sp. S08-1 0.46 OH686_17700 phosphoribosylglycinamide formyltransferase 2 0.30 OH686_20095 pyridoxine 5'-phosphate synthase — —
Escherichia coli ECOR27 0.46 NOLOHH_16860 purT formate-dependent phosphoribosylglycinamide formyltransferase 0.33 NOLOHH_13100 pdxJ pyridoxine 5'-phosphate synthase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.46 OHPLBJKB_01880 Formate-dependent phosphoribosylglycinamide formyltransferase 0.33 OHPLBJKB_01143 'Pyridoxine 5'-phosphate synthase' transl_table=11 low > 73
Escherichia coli BW25113 0.46 b1849 purT phosphoribosylglycinamide formyltransferase 2 (NCBI) 0.33 b2564 pdxJ pyridoxal phosphate biosynthetic protein (NCBI) low > 76
Escherichia coli ECRC99 0.46 KEDOAH_01755 purT formate-dependent phosphoribosylglycinamide formyltransferase 0.33 KEDOAH_06795 pdxJ pyridoxine 5'-phosphate synthase — —
Escherichia coli ECRC101 0.46 MCAODC_19055 purT formate-dependent phosphoribosylglycinamide formyltransferase 0.33 MCAODC_11955 pdxJ pyridoxine 5'-phosphate synthase — —
Escherichia coli ECRC102 0.46 NIAGMN_01710 purT formate-dependent phosphoribosylglycinamide formyltransferase 0.33 NIAGMN_19195 pdxJ pyridoxine 5'-phosphate synthase — —
Escherichia coli ECRC101 0.46 OKFHMN_26350 purT formate-dependent phosphoribosylglycinamide formyltransferase 0.33 OKFHMN_21425 pdxJ pyridoxine 5'-phosphate synthase — —
Escherichia coli ECRC98 0.46 JDDGAC_00925 purT formate-dependent phosphoribosylglycinamide formyltransferase 0.33 JDDGAC_25090 pdxJ pyridoxine 5'-phosphate synthase — —
Dickeya dadantii 3937 0.45 DDA3937_RS10145 formate-dependent phosphoribosylglycinamide formyltransferase 0.31 DDA3937_RS15720 pyridoxine 5'-phosphate synthase low > 74
Parabacteroides merdae CL09T00C40 0.45 HMPREF1078_RS10980 formate-dependent phosphoribosylglycinamide formyltransferase 0.72 HMPREF1078_RS10265 pyridoxine 5'-phosphate synthase low > 61
Pseudomonas putida KT2440 0.45 PP_1457 Phosphoribosylglycinamide formyltransferase 2 0.30 PP_1436 Pyridoxine 5'-phosphate synthase — —
Rhodanobacter denitrificans MT42 0.45 LRK55_RS14260 formate-dependent phosphoribosylglycinamide formyltransferase 0.43 LRK55_RS08205 pyridoxine 5'-phosphate synthase — —
Dickeya dianthicola 67-19 0.45 HGI48_RS10175 formate-dependent phosphoribosylglycinamide formyltransferase 0.32 HGI48_RS15805 pyridoxine 5'-phosphate synthase low > 71
Shewanella oneidensis MR-1 0.45 SO3613 purT phosphoribosylglycinamide formyltransferase 2 (NCBI ptt file) 0.28 SO1351 pdxJ pyridoxal phosphate biosynthetic protein PdxJ (NCBI ptt file) — —
Shewanella sp. ANA-3 0.45 Shewana3_3197 purT phosphoribosylglycinamide formyltransferase 2 (RefSeq) 0.27 Shewana3_3023 pyridoxine 5'-phosphate synthase (RefSeq) — —
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS14545 formate-dependent phosphoribosylglycinamide formyltransferase 0.43 LRK54_RS08440 pyridoxine 5'-phosphate synthase — —
Dickeya dianthicola ME23 0.45 DZA65_RS10590 formate-dependent phosphoribosylglycinamide formyltransferase 0.32 DZA65_RS16885 pyridoxine 5'-phosphate synthase low > 75
Rhodanobacter sp. FW510-T8 0.45 OKGIIK_03390 purT formate-dependent phosphoribosylglycinamide formyltransferase 0.43 OKGIIK_15220 pyridoxine 5'-phosphate synthase — —
Paraburkholderia bryophila 376MFSha3.1 0.44 H281DRAFT_00303 formate-dependent phosphoribosylglycinamide formyltransferase 0.33 H281DRAFT_04365 pyridoxine 5'-phosphate synthase — —
Pectobacterium carotovorum WPP14 0.44 HER17_RS11770 formate-dependent phosphoribosylglycinamide formyltransferase 0.31 HER17_RS05830 pyridoxine 5'-phosphate synthase low > 75
Lysobacter sp. OAE881 0.44 ABIE51_RS14525 formate-dependent phosphoribosylglycinamide formyltransferase 0.41 ABIE51_RS00810 pyridoxine 5'-phosphate synthase — —
Vibrio cholerae E7946 ATCC 55056 0.44 CSW01_06215 phosphoribosylglycinamide formyltransferase 2 0.31 CSW01_12440 pyridoxine 5'-phosphate synthase — —
Xanthomonas campestris pv. campestris strain 8004 0.44 Xcc-8004.3846.1 Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) 0.43 Xcc-8004.17.1 Pyridoxine 5'-phosphate synthase (EC 2.6.99.2) low > 74
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS24510 formate-dependent phosphoribosylglycinamide formyltransferase 0.33 QEN71_RS04625 pyridoxine 5'-phosphate synthase — —
Rahnella sp. WP5 0.44 EX31_RS24735 formate-dependent phosphoribosylglycinamide formyltransferase 0.30 EX31_RS21850 pyridoxine 5'-phosphate synthase low > 89
Klebsiella michiganensis M5al 0.44 BWI76_RS18090 phosphoribosylglycinamide formyltransferase 2 0.32 BWI76_RS21305 pyridoxine 5'-phosphate synthase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.44 GFF1628 Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) 0.33 GFF2472 'Pyridoxine 5'-phosphate synthase (EC 2.6.99.2)' transl_table=11 — —
Shewanella amazonensis SB2B 0.43 Sama_2807 purT phosphoribosylglycinamide formyltransferase 2 (RefSeq) 0.28 Sama_0883 pyridoxine 5'-phosphate synthase (RefSeq) — —
Serratia liquefaciens MT49 0.43 IAI46_14770 formate-dependent phosphoribosylglycinamide formyltransferase 0.30 IAI46_19535 pyridoxine 5'-phosphate synthase — —
Pantoea sp. MT58 0.43 IAI47_08505 formate-dependent phosphoribosylglycinamide formyltransferase 0.31 IAI47_04895 pyridoxine 5'-phosphate synthase low > 76
Herbaspirillum seropedicae SmR1 0.43 HSERO_RS11090 phosphoribosylglycinamide formyltransferase 0.30 HSERO_RS09675 pyridoxine 5'-phosphate synthase — —
Erwinia tracheiphila SCR3 0.43 LU632_RS13350 purT formate-dependent phosphoribosylglycinamide formyltransferase 0.31 LU632_RS15370 pdxJ pyridoxine 5'-phosphate synthase — —
Paraburkholderia graminis OAS925 0.43 ABIE53_001433 phosphoribosylglycinamide formyltransferase 2 0.33 ABIE53_003033 pyridoxine 5-phosphate synthase — —
Enterobacter sp. TBS_079 0.43 MPMX20_02754 Formate-dependent phosphoribosylglycinamide formyltransferase 0.31 MPMX20_03435 Pyridoxine 5'-phosphate synthase low > 85
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS06125 phosphoribosylglycinamide formyltransferase 0.34 BPHYT_RS14355 pyridoxine 5'-phosphate synthase — —
Enterobacter asburiae PDN3 0.42 EX28DRAFT_0707 formate-dependent phosphoribosylglycinamide formyltransferase (EC 6.3.4.-) 0.31 EX28DRAFT_0082 pyridoxine 5'-phosphate synthase — —
Dechlorosoma suillum PS 0.42 Dsui_1003 phosphoribosylglycinamide formyltransferase 2 0.31 Dsui_2463 pyridoxine 5''-phosphate synthase — —
Cupriavidus basilensis FW507-4G11 0.41 RR42_RS22745 phosphoribosylglycinamide formyltransferase 0.35 RR42_RS14025 pyridoxine 5'-phosphate synthase — —
Acidovorax sp. GW101-3H11 0.41 Ac3H11_4666 Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) 0.43 Ac3H11_1563 Pyridoxine 5'-phosphate synthase (EC 2.6.99.2) — —
Acinetobacter radioresistens SK82 0.41 MPMX26_01866 Formate-dependent phosphoribosylglycinamide formyltransferase 0.32 MPMX26_02152 Pyridoxine 5'-phosphate synthase — —
Variovorax sp. SCN45 0.41 GFF3604 Formate-dependent phosphoribosylglycinamide formyltransferase 0.40 GFF3873 Pyridoxine 5'-phosphate synthase (EC 2.6.99.2) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.41 A4249_RS00765 formate-dependent phosphoribosylglycinamide formyltransferase 0.20 A4249_RS05520 pyridoxine 5'-phosphate synthase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF363 Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) 0.44 GFF3349 Pyridoxine 5'-phosphate synthase (EC 2.6.99.2) — —
Variovorax sp. OAS795 0.39 ABID97_RS00805 formate-dependent phosphoribosylglycinamide formyltransferase 0.39 ABID97_RS08380 pyridoxine 5'-phosphate synthase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.16 Echvi_0884 phosphoribosylaminoimidazole carboxylase, PurK protein 0.60 Echvi_0661 pyridoxine 5'-phosphate synthase — —
Caulobacter crescentus NA1000 Δfur 0.16 CCNA_03392 phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit 0.27 CCNA_01626 pyridoxal phosphate biosynthetic protein pdxJ — —
Caulobacter crescentus NA1000 0.16 CCNA_03392 phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit 0.27 CCNA_01626 pyridoxal phosphate biosynthetic protein pdxJ — —
Sinorhizobium meliloti 1021 0.14 SMc04002 phosphoribosylaminoimidazole carboxylase ATPase subunit 0.41 SMc01407 pyridoxine 5'-phosphate synthase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.14 ABZR88_RS09290 5-(carboxyamino)imidazole ribonucleotide synthase 0.62 ABZR88_RS01795 pyridoxine 5'-phosphate synthase — —
Magnetospirillum magneticum AMB-1 0.14 AMB_RS11140 5-(carboxyamino)imidazole ribonucleotide synthase 0.27 AMB_RS11405 pyridoxine 5'-phosphate synthase — —
Pedobacter sp. GW460-11-11-14-LB5 0.13 CA265_RS07745 5-(carboxyamino)imidazole ribonucleotide synthase 0.61 CA265_RS25170 pyridoxine 5'-phosphate synthase — —
Dinoroseobacter shibae DFL-12 0.13 Dshi_0680 phosphoribosylaminoimidazole carboxylase, ATPase subunit (RefSeq) 0.29 Dshi_0196 pyridoxal phosphate biosynthetic protein PdxJ (RefSeq) — —
Agrobacterium fabrum C58 0.13 Atu3755 phosphoribosylaminoimidazole carboxylase ATPase subunit 0.41 Atu2024 pyridoxal phosphate biosynthesis protein — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.12 CA264_12600 5-(carboxyamino)imidazole ribonucleotide synthase 0.62 CA264_15275 pyridoxine 5'-phosphate synthase — —
Rhodopseudomonas palustris CGA009 0.12 TX73_021645 5-(carboxyamino)imidazole ribonucleotide synthase 0.31 TX73_013960 pyridoxine 5'-phosphate synthase — —
Rhizobium sp. OAE497 0.11 ABIE40_RS16070 5-(carboxyamino)imidazole ribonucleotide synthase 0.40 ABIE40_RS11420 pyridoxine 5'-phosphate synthase — —
Phaeobacter inhibens DSM 17395 0.11 PGA1_c24870 phosphoribosylaminoimidazole carboxylase ATPase subunit PurK 0.30 PGA1_c01030 pyridoxine 5'-phosphate synthase PdxJ — —
Ralstonia solanacearum PSI07 0.11 RPSI07_RS21130 5-(carboxyamino)imidazole ribonucleotide synthase 0.30 RPSI07_RS18960 pyridoxine 5'-phosphate synthase — —
Ralstonia solanacearum IBSBF1503 0.11 RALBFv3_RS12200 5-(carboxyamino)imidazole ribonucleotide synthase 0.29 RALBFv3_RS14500 pyridoxine 5'-phosphate synthase — —
Ralstonia solanacearum UW163 0.11 UW163_RS01410 5-(carboxyamino)imidazole ribonucleotide synthase 0.29 UW163_RS11965 pyridoxine 5'-phosphate synthase — —
Ralstonia solanacearum GMI1000 0.10 RS_RS02885 5-(carboxyamino)imidazole ribonucleotide synthase 0.30 RS_RS05280 pyridoxine 5'-phosphate synthase — —
Rhodospirillum rubrum S1H 0.10 Rru_A1051 Phosphoribosylaminoimidazole carboxylase, ATPase subunit (NCBI) 0.27 Rru_A1854 Pyridoxal phosphate biosynthetic protein PdxJ (NCBI) low > 58
Ralstonia sp. UNC404CL21Col 0.10 ABZR87_RS08090 5-(carboxyamino)imidazole ribonucleotide synthase 0.26 ABZR87_RS10220 pyridoxine 5'-phosphate synthase — —
Escherichia coli Nissle 1917 0.09 ECOLIN_RS03025 5-(carboxyamino)imidazole ribonucleotide synthase 0.33 ECOLIN_RS14515 pyridoxine 5'-phosphate synthase — —
Castellaniella sp019104865 MT123 0.09 ABCV34_RS00565 5-(carboxyamino)imidazole ribonucleotide synthase 0.27 ABCV34_RS04215 pyridoxine 5'-phosphate synthase — —
Alteromonas macleodii MIT1002 0.08 MIT1002_00522 N5-carboxyaminoimidazole ribonucleotide synthase 0.29 MIT1002_00791 Pyridoxine 5'-phosphate synthase — —
Bosea sp. OAE506 0.08 ABIE41_RS09245 5-(carboxyamino)imidazole ribonucleotide synthase 0.27 ABIE41_RS19905 pyridoxine 5'-phosphate synthase low > 77

Not shown: 4 genomes with orthologs for BT0704 only; 2 genomes with orthologs for BT3918 only