Conservation of cofitness between b0004 and b3771 in Escherichia coli BW25113

93 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b0004 thrC threonine synthase (NCBI) 1.0 b3771 ilvD dihydroxy-acid dehydratase (NCBI) 0.92 13
Escherichia coli ECRC99 1.00 KEDOAH_17055 thrC threonine synthase 1.00 KEDOAH_13510 ilvD dihydroxy-acid dehydratase — —
Escherichia fergusonii Becca 1.00 EFB2_04039 Threonine synthase 0.99 EFB2_04865 Dihydroxy-acid dehydratase low > 86
Escherichia coli ECRC98 1.00 JDDGAC_14695 thrC threonine synthase 1.00 JDDGAC_18260 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC102 1.00 NIAGMN_08950 thrC threonine synthase 1.00 NIAGMN_12395 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECOR27 1.00 NOLOHH_03430 thrC threonine synthase 1.00 NOLOHH_06775 ilvD dihydroxy-acid dehydratase low > 57
Escherichia coli ECRC101 1.00 MCAODC_01615 thrC threonine synthase 1.00 MCAODC_05145 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC62 1.00 BNILDI_08170 thrC threonine synthase 1.00 BNILDI_04750 ilvD dihydroxy-acid dehydratase — —
Escherichia coli BL21 1.00 ECD_00004 L-threonine synthase 1.00 ECD_03649 dihydroxyacid dehydratase 0.69 16
Escherichia coli ECRC101 1.00 OKFHMN_11100 thrC threonine synthase 1.00 OKFHMN_14640 ilvD dihydroxy-acid dehydratase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03656 Threonine synthase 1.00 OHPLBJKB_04282 Dihydroxy-acid dehydratase low > 73
Escherichia coli ECOR38 0.99 HEPCGN_09105 thrC threonine synthase 1.00 HEPCGN_13350 ilvD dihydroxy-acid dehydratase low > 85
Escherichia coli Nissle 1917 0.99 ECOLIN_RS00020 threonine synthase 0.99 ECOLIN_RS21665 dihydroxy-acid dehydratase low > 52
Enterobacter asburiae PDN3 0.93 EX28DRAFT_3616 threonine synthase 0.96 EX28DRAFT_4443 dihydroxy-acid dehydratase 0.59 12
Enterobacter sp. TBS_079 0.93 MPMX20_00712 Threonine synthase 0.97 MPMX20_04499 Dihydroxy-acid dehydratase 0.95 3
Klebsiella michiganensis M5al 0.92 BWI76_RS04255 threonine synthase 0.96 BWI76_RS00975 dihydroxy-acid dehydratase 0.95 3
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF1080 Threonine synthase (EC 4.2.3.1) 0.97 GFF2901 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 78
Rahnella sp. WP5 0.85 EX31_RS03935 threonine synthase 0.87 EX31_RS15005 dihydroxy-acid dehydratase 0.99 1
Serratia liquefaciens MT49 0.84 IAI46_03040 threonine synthase 0.90 IAI46_24345 dihydroxy-acid dehydratase 0.78 27
Pantoea sp. MT58 0.81 IAI47_16205 threonine synthase 0.89 IAI47_01035 dihydroxy-acid dehydratase 0.96 4
Dickeya dadantii 3937 0.80 DDA3937_RS18405 threonine synthase 0.92 DDA3937_RS20155 dihydroxy-acid dehydratase 0.91 2
Dickeya dianthicola ME23 0.80 DZA65_RS19475 threonine synthase 0.91 DZA65_RS21335 dihydroxy-acid dehydratase 0.66 28
Erwinia tracheiphila SCR3 0.79 LU632_RS02620 thrC threonine synthase 0.86 LU632_RS24400 ilvD dihydroxy-acid dehydratase — —
Dickeya dianthicola 67-19 0.79 HGI48_RS18335 threonine synthase 0.91 HGI48_RS20295 dihydroxy-acid dehydratase 0.75 3
Pectobacterium carotovorum WPP14 0.79 HER17_RS02805 threonine synthase 0.91 HER17_RS01075 dihydroxy-acid dehydratase 0.94 15
Vibrio cholerae E7946 ATCC 55056 0.68 CSW01_11965 threonine synthase 0.85 CSW01_00140 dihydroxy-acid dehydratase low > 62
Alteromonas macleodii MIT1002 0.65 MIT1002_03084 Threonine synthase 0.79 MIT1002_04041 Dihydroxy-acid dehydratase 0.94 29
Shewanella loihica PV-4 0.58 Shew_1081 threonine synthase (RefSeq) 0.78 Shew_0292 dihydroxy-acid dehydratase (RefSeq) 0.98 14
Shewanella sp. ANA-3 0.56 Shewana3_1141 threonine synthase (RefSeq) 0.80 Shewana3_0358 dihydroxy-acid dehydratase (RefSeq) 0.96 3
Shewanella oneidensis MR-1 0.55 SO3413 thrC threonine synthase (NCBI ptt file) 0.80 SO4345 ilvD dihydroxy-acid dehydratase (NCBI ptt file) 0.97 4
Shewanella amazonensis SB2B 0.55 Sama_0907 threonine synthase (RefSeq) 0.79 Sama_3279 dihydroxy-acid dehydratase (RefSeq) 0.97 2
Phocaeicola vulgatus CL09T03C04 0.42 HMPREF1058_RS14730 threonine synthase 0.64 HMPREF1058_RS16815 dihydroxy-acid dehydratase 0.89 21
Phocaeicola dorei CL03T12C01 0.42 ABI39_RS10440 threonine synthase 0.64 ABI39_RS12715 dihydroxy-acid dehydratase 0.86 5
Bacteroides thetaiotaomicron VPI-5482 0.41 BT2401 threonine synthase (NCBI ptt file) 0.63 BT2078 dihydroxy-acid dehydratase (NCBI ptt file) 0.94 6
Bacteroides ovatus ATCC 8483 0.41 BACOVA_03023 threonine synthase 0.62 BACOVA_03302 dihydroxy-acid dehydratase 0.95 9
Bacteroides stercoris CC31F 0.41 HMPREF1181_RS00050 threonine synthase 0.64 HMPREF1181_RS08335 dihydroxy-acid dehydratase 0.87 43
Echinicola vietnamensis KMM 6221, DSM 17526 0.40 Echvi_2002 threonine synthase 0.29 Echvi_2055 dihydroxy-acid dehydratase 0.97 3
Parabacteroides merdae CL09T00C40 0.40 HMPREF1078_RS10395 threonine synthase 0.65 HMPREF1078_RS16695 dihydroxy-acid dehydratase low > 61
Pedobacter sp. GW460-11-11-14-LB5 0.40 CA265_RS23465 threonine synthase 0.27 CA265_RS15795 dihydroxy-acid dehydratase 0.89 1
Mucilaginibacter yixingensis YX-36 DSM 26809 0.40 ABZR88_RS18960 threonine synthase 0.27 ABZR88_RS11575 dihydroxy-acid dehydratase — —
Xanthomonas campestris pv. campestris strain 8004 0.31 Xcc-8004.2954.1 Threonine synthase (EC 4.2.3.1) 0.72 Xcc-8004.451.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.90 14
Lysobacter sp. OAE881 0.30 ABIE51_RS17530 threonine synthase 0.27 ABIE51_RS17540 dihydroxy-acid dehydratase 0.97 10
Caulobacter crescentus NA1000 Δfur 0.29 CCNA_03510 threonine synthase 0.72 CCNA_03139 dihydroxy-acid dehydratase — —
Caulobacter crescentus NA1000 0.29 CCNA_03510 threonine synthase 0.72 CCNA_03139 dihydroxy-acid dehydratase — —
Rhodanobacter denitrificans MT42 0.28 LRK55_RS09995 threonine synthase 0.26 LRK55_RS09960 dihydroxy-acid dehydratase low > 63
Dyella japonica UNC79MFTsu3.2 0.28 ABZR86_RS15975 threonine synthase (EC 4.2.3.1) (from data) 0.28 ABZR86_RS15945 dihydroxy-acid dehydratase 0.95 30
Rhodanobacter denitrificans FW104-10B01 0.28 LRK54_RS10355 threonine synthase 0.26 LRK54_RS10320 dihydroxy-acid dehydratase low > 59
Pseudomonas fluorescens FW300-N2E2 0.28 Pf6N2E2_3142 Threonine synthase (EC 4.2.3.1) 0.75 Pf6N2E2_4564 Dihydroxy-acid dehydratase (EC 4.2.1.9) — —
Bosea sp. OAE506 0.28 ABIE41_RS22985 threonine synthase 0.29 ABIE41_RS15690 dihydroxy-acid dehydratase — —
Rhodanobacter sp. FW510-T8 0.28 OKGIIK_13570 thrC threonine synthase 0.27 OKGIIK_13600 ilvD dihydroxy-acid dehydratase low > 52
Pseudomonas fluorescens FW300-N2C3 0.28 AO356_06370 threonine synthase 0.75 AO356_13250 dihydroxy-acid dehydratase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.28 Psyr_1291 L-threonine synthase 0.74 Psyr_0469 dihydroxyacid dehydratase — —
Pseudomonas fluorescens FW300-N2E3 0.28 AO353_04350 threonine synthase 0.75 AO353_08345 dihydroxy-acid dehydratase — —
Pseudomonas syringae pv. syringae B728a 0.28 Psyr_1291 L-threonine synthase 0.74 Psyr_0469 dihydroxyacid dehydratase — —
Pseudomonas stutzeri RCH2 0.28 Psest_3125 threonine synthase 0.75 Psest_0234 dihydroxy-acid dehydratase — —
Pseudomonas putida KT2440 0.27 PP_1471 Threonine synthase 0.74 PP_5128 Dihydroxy-acid dehydratase — —
Pseudomonas fluorescens GW456-L13 0.27 PfGW456L13_1724 Threonine synthase (EC 4.2.3.1) 0.75 PfGW456L13_973 Dihydroxy-acid dehydratase (EC 4.2.1.9) — —
Pseudomonas simiae WCS417 0.27 PS417_22880 threonine synthase 0.75 PS417_26890 dihydroxy-acid dehydratase — —
Pseudomonas fluorescens FW300-N1B4 0.27 Pf1N1B4_3014 Threonine synthase (EC 4.2.3.1) 0.75 Pf1N1B4_2303 Dihydroxy-acid dehydratase (EC 4.2.1.9) — —
Pseudomonas sp. RS175 0.27 PFR28_00334 Threonine synthase 0.75 PFR28_04278 Dihydroxy-acid dehydratase — —
Pseudomonas fluorescens SBW25-INTG 0.27 PFLU_RS24545 threonine synthase 0.75 PFLU_RS28535 dihydroxy-acid dehydratase — —
Pseudomonas fluorescens SBW25 0.27 PFLU_RS24545 threonine synthase 0.75 PFLU_RS28535 dihydroxy-acid dehydratase low > 109
Pseudomonas sp. S08-1 0.27 OH686_17765 threonine synthase 0.75 OH686_14100 dihydroxy-acid dehydratase low > 80
Dinoroseobacter shibae DFL-12 0.26 Dshi_1146 threonine synthase (RefSeq) 0.31 Dshi_0129 dihydroxy-acid dehydratase (RefSeq) — —
Azospirillum brasilense Sp245 0.26 AZOBR_RS10545 threonine synthase 0.74 AZOBR_RS15015 dihydroxy-acid dehydratase — —
Sinorhizobium meliloti 1021 0.26 SMc00077 threonine synthase 0.75 SMc04045 dihydroxy-acid dehydratase — —
Azospirillum sp. SherDot2 0.26 MPMX19_00671 Threonine synthase 0.74 MPMX19_05356 Dihydroxy-acid dehydratase — —
Phaeobacter inhibens DSM 17395 0.26 PGA1_c06310 threonine synthase ThrC 0.70 PGA1_c29490 dihydroxy-acid dehydratase LivD — —
Rhodopseudomonas palustris CGA009 0.25 TX73_004325 threonine synthase 0.74 TX73_007515 dihydroxy-acid dehydratase — —
Magnetospirillum magneticum AMB-1 0.25 AMB_RS17140 threonine synthase 0.73 AMB_RS12770 dihydroxy-acid dehydratase — —
Rhizobium sp. OAE497 0.25 ABIE40_RS04230 threonine synthase 0.75 ABIE40_RS08005 dihydroxy-acid dehydratase — —
Marinobacter adhaerens HP15 0.25 HP15_765 threonine synthase 0.70 HP15_595 dihydroxy-acid dehydratase — —
Rhodospirillum rubrum S1H 0.25 Rru_A3233 Threonine synthase (NCBI) 0.71 Rru_A1786 Dihydroxy-acid dehydratase (NCBI) — —
Agrobacterium fabrum C58 0.25 Atu0787 threonine synthase 0.73 Atu1918 dihydroxy-acid dehydratase — —
Castellaniella sp019104865 MT123 0.24 ABCV34_RS02300 threonine synthase 0.72 ABCV34_RS14810 dihydroxy-acid dehydratase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.24 A4249_RS00020 threonine synthase 0.25 A4249_RS10030 dihydroxy-acid dehydratase 0.99 3
Sphingomonas koreensis DSMZ 15582 0.23 Ga0059261_1999 threonine synthase 0.28 Ga0059261_4216 Dihydroxyacid dehydratase/phosphogluconate dehydratase 0.98 4
Variovorax sp. OAS795 0.23 ABID97_RS25760 threonine synthase 0.31 ABID97_RS17500 dihydroxy-acid dehydratase — —
Herbaspirillum seropedicae SmR1 0.22 HSERO_RS10470 threonine synthase 0.74 HSERO_RS02650 dihydroxy-acid dehydratase — —
Variovorax sp. SCN45 0.22 GFF2800 Threonine synthase (EC 4.2.3.1) 0.31 GFF471 Dihydroxy-acid dehydratase (EC 4.2.1.9) — —
Acidovorax sp. GW101-3H11 0.22 Ac3H11_1505 Threonine synthase (EC 4.2.3.1) 0.74 Ac3H11_955 Dihydroxy-acid dehydratase (EC 4.2.1.9) — —
Cupriavidus basilensis FW507-4G11 0.22 RR42_RS12535 threonine synthase 0.29 RR42_RS16210 dihydroxy-acid dehydratase — —
Paraburkholderia graminis OAS925 0.22 ABIE53_002027 threonine synthase 0.74 ABIE53_006513 dihydroxy-acid dehydratase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.22 GFF3936 Threonine synthase (EC 4.2.3.1) 0.64 GFF2073 Dihydroxy-acid dehydratase (EC 4.2.1.9) — —
Paraburkholderia bryophila 376MFSha3.1 0.21 H281DRAFT_00811 L-threonine synthase 0.74 H281DRAFT_05312 dihydroxyacid dehydratase — —
Dechlorosoma suillum PS 0.21 Dsui_2904 threonine synthase 0.74 Dsui_1122 dihydroxy-acid dehydratase — —
Paraburkholderia sabiae LMG 24235 0.21 QEN71_RS22400 threonine synthase 0.74 QEN71_RS21095 dihydroxy-acid dehydratase low > 153
Ralstonia sp. UNC404CL21Col 0.21 ABZR87_RS05865 threonine synthase 0.75 ABZR87_RS00240 dihydroxy-acid dehydratase low > 80
Ralstonia solanacearum GMI1000 0.21 RS_RS06660 threonine synthase 0.28 RS_RS12105 dihydroxy-acid dehydratase — —
Burkholderia phytofirmans PsJN 0.21 BPHYT_RS08960 threonine synthase 0.74 BPHYT_RS10100 dihydroxy-acid dehydratase low > 109
Bifidobacterium breve UCC2003 0.20 BBR_RS14070 threonine synthase 0.56 BBR_RS17635 dihydroxy-acid dehydratase low > 34
Ralstonia solanacearum PSI07 0.20 RPSI07_RS17485 threonine synthase 0.29 RPSI07_RS12840 dihydroxy-acid dehydratase — —
Ralstonia solanacearum IBSBF1503 0.20 RALBFv3_RS15880 threonine synthase 0.29 RALBFv3_RS04535 dihydroxy-acid dehydratase — —
Ralstonia solanacearum UW163 0.20 UW163_RS13325 threonine synthase 0.29 UW163_RS09135 dihydroxy-acid dehydratase — —

Not shown: 0 genomes with orthologs for b0004 only; 8 genomes with orthologs for b3771 only