Conservation of cofitness between b3822 and b4389 in Escherichia coli BW25113

95 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3822 recQ ATP-dependent DNA helicase (NCBI) 1.0 b4389 radA predicted repair protein (NCBI) 0.21 18
Escherichia coli Nissle 1917 1.00 ECOLIN_RS21935 ATP-dependent DNA helicase RecQ 1.00 ECOLIN_RS25190 DNA repair protein RadA low > 52
Escherichia fergusonii Becca 1.00 EFB2_04815 ATP-dependent DNA helicase RecQ 1.00 EFB2_04057 DNA repair protein RadA low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_04229 ATP-dependent DNA helicase RecQ 1.00 OHPLBJKB_03672 DNA repair protein RadA low > 73
Escherichia coli ECRC99 1.00 KEDOAH_13790 recQ ATP-dependent DNA helicase RecQ 1.00 KEDOAH_16960 radA DNA repair protein RadA — —
Escherichia coli ECRC101 1.00 OKFHMN_14360 recQ ATP-dependent DNA helicase RecQ 1.00 OKFHMN_11195 radA DNA repair protein RadA — —
Escherichia coli ECRC62 1.00 BNILDI_05040 recQ ATP-dependent DNA helicase RecQ 1.00 BNILDI_08075 radA DNA repair protein RadA — —
Escherichia coli ECOR38 1.00 HEPCGN_13060 recQ ATP-dependent DNA helicase RecQ 0.99 HEPCGN_09195 radA DNA repair protein RadA low > 85
Escherichia coli ECRC98 1.00 JDDGAC_17985 recQ ATP-dependent DNA helicase RecQ 1.00 JDDGAC_14790 radA DNA repair protein RadA — —
Escherichia coli ECRC101 1.00 MCAODC_04865 recQ ATP-dependent DNA helicase RecQ 1.00 MCAODC_01710 radA DNA repair protein RadA — —
Escherichia coli ECRC102 1.00 NIAGMN_12115 recQ ATP-dependent DNA helicase RecQ 1.00 NIAGMN_09045 radA DNA repair protein RadA — —
Escherichia coli ECOR27 1.00 NOLOHH_06490 recQ ATP-dependent DNA helicase RecQ 1.00 NOLOHH_03520 radA DNA repair protein RadA low > 57
Escherichia coli BL21 1.00 ECD_03701 ATP-dependent DNA helicase 1.00 ECD_04265 DNA repair protein 0.77 6
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF248 ATP-dependent DNA helicase RecQ 0.98 GFF1057 DNA repair protein RadA low > 78
Enterobacter sp. TBS_079 0.93 MPMX20_04458 ATP-dependent DNA helicase RecQ 0.97 MPMX20_00694 DNA repair protein RadA low > 85
Enterobacter asburiae PDN3 0.92 EX28DRAFT_4487 ATP-dependent DNA helicase RecQ 0.97 EX28DRAFT_3597 DNA repair protein RadA low > 76
Klebsiella michiganensis M5al 0.92 BWI76_RS01245 DNA helicase RecQ 0.97 BWI76_RS04165 DNA repair protein RadA low > 92
Pectobacterium carotovorum WPP14 0.82 HER17_RS01395 ATP-dependent DNA helicase RecQ 0.90 HER17_RS19085 DNA repair protein RadA low > 75
Erwinia tracheiphila SCR3 0.82 LU632_RS24095 recQ ATP-dependent DNA helicase RecQ 0.94 LU632_RS02550 radA DNA repair protein RadA low > 74
Pantoea sp. MT58 0.82 IAI47_18360 ATP-dependent DNA helicase RecQ 0.93 IAI47_16345 DNA repair protein RadA low > 76
Rahnella sp. WP5 0.81 EX31_RS15210 ATP-dependent DNA helicase RecQ 0.94 EX31_RS04030 DNA repair protein RadA low > 89
Serratia liquefaciens MT49 0.81 IAI46_00770 ATP-dependent DNA helicase RecQ 0.93 IAI46_02945 DNA repair protein RadA low > 86
Dickeya dianthicola ME23 0.80 DZA65_RS21045 ATP-dependent DNA helicase RecQ 0.88 DZA65_RS02485 DNA repair protein RadA low > 75
Dickeya dianthicola 67-19 0.80 HGI48_RS20005 ATP-dependent DNA helicase RecQ 0.87 HGI48_RS02380 DNA repair protein RadA low > 71
Dickeya dadantii 3937 0.80 DDA3937_RS19850 ATP-dependent DNA helicase RecQ 0.87 DDA3937_RS02420 DNA repair protein RadA low > 74
Vibrio cholerae E7946 ATCC 55056 0.67 CSW01_01045 DNA helicase RecQ 0.80 CSW01_11870 DNA repair protein RadA low > 62
Shewanella oneidensis MR-1 0.58 SO4241 recQ ATP-dependent DNA helicase RecQ (NCBI ptt file) 0.77 SO1226 radA DNA repair protein RadA (NCBI ptt file) 0.57 8
Shewanella sp. ANA-3 0.58 Shewana3_3763 ATP-dependent DNA helicase RecQ (RefSeq) 0.77 Shewana3_1049 DNA repair protein RadA (RefSeq) low > 73
Shewanella amazonensis SB2B 0.58 Sama_0333 ATP-dependent DNA helicase RecQ (RefSeq) 0.75 Sama_0981 DNA repair protein RadA (RefSeq) 0.68 8
Shewanella loihica PV-4 0.57 Shew_3474 ATP-dependent DNA helicase RecQ (RefSeq) 0.37 Shew_2807 DNA repair protein RadA (RefSeq) 0.80 3
Alteromonas macleodii MIT1002 0.53 MIT1002_00148 ATP-dependent DNA helicase RecQ 0.73 MIT1002_02706 Lon protease 2 low > 70
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_4423 ATP-dependent DNA helicase RecQ 0.64 PfGW456L13_1442 DNA repair protein RadA 0.23 83
Pontibacter actiniarum KMM 6156, DSM 19842 0.45 CA264_07560 DNA helicase RecQ 0.39 CA264_17125 DNA repair protein RadA 0.59 7
Pseudomonas putida KT2440 0.45 PP_4516 ATP-dependent DNA 3 0.62 PP_4644 DNA repair enzyme low > 96
Pseudomonas sp. RS175 0.45 PFR28_00788 ATP-dependent DNA helicase RecQ 0.64 PFR28_03792 DNA repair protein RadA low > 88
Herbaspirillum seropedicae SmR1 0.45 HSERO_RS02465 ATP-dependent DNA helicase RecQ 0.53 HSERO_RS10745 DNA repair protein RadA 0.44 11
Pseudomonas fluorescens FW300-N2C3 0.45 AO356_04050 ATP-dependent DNA helicase RecQ 0.64 AO356_15680 DNA repair protein RadA low > 104
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_2645 ATP-dependent DNA helicase RecQ 0.64 Pf6N2E2_5076 DNA repair protein RadA low > 103
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_3533 ATP-dependent DNA helicase RecQ 0.64 Pf1N1B4_2768 DNA repair protein RadA low > 87
Pseudomonas fluorescens SBW25 0.45 PFLU_RS21920 DNA helicase RecQ 0.64 PFLU_RS26230 DNA repair protein RadA low > 109
Pseudomonas fluorescens SBW25-INTG 0.45 PFLU_RS21920 DNA helicase RecQ 0.64 PFLU_RS26230 DNA repair protein RadA low > 109
Pseudomonas simiae WCS417 0.45 PS417_19950 ATP-dependent DNA helicase RecQ 0.63 PS417_24305 DNA repair protein RadA 0.32 2
Phocaeicola vulgatus CL09T03C04 0.44 HMPREF1058_RS14585 DNA helicase RecQ 0.40 HMPREF1058_RS14715 DNA repair protein RadA low > 67
Mucilaginibacter yixingensis YX-36 DSM 26809 0.44 ABZR88_RS20865 DNA helicase RecQ 0.39 ABZR88_RS20495 DNA repair protein RadA low > 71
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS13000 DNA helicase RecQ 0.58 LRK54_RS02525 DNA repair protein RadA low > 59
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_18430 ATP-dependent DNA helicase RecQ 0.63 AO353_13980 DNA repair protein RadA 0.34 29
Dechlorosoma suillum PS 0.44 Dsui_3092 ATP-dependent DNA helicase RecQ 0.52 Dsui_2413 DNA repair protein RadA low > 51
Phocaeicola dorei CL03T12C01 0.44 ABI39_RS10235 DNA helicase RecQ 0.40 ABI39_RS10420 DNA repair protein RadA low > 72
Pseudomonas stutzeri RCH2 0.44 Psest_1869 ATP-dependent DNA helicase RecQ 0.63 Psest_3401 DNA repair protein RadA 0.46 12
Pseudomonas syringae pv. syringae B728a 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ 0.64 Psyr_4275 DNA replication and repair protein RadA low > 86
Rhodanobacter denitrificans MT42 0.44 LRK55_RS12700 DNA helicase RecQ 0.58 LRK55_RS02280 DNA repair protein RadA low > 63
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS19925 DNA helicase RecQ 0.58 ABZR86_RS08845 DNA repair protein RadA low > 74
Pseudomonas syringae pv. syringae B728a ΔmexB 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ 0.64 Psyr_4275 DNA replication and repair protein RadA low > 86
Marinobacter adhaerens HP15 0.44 HP15_1718 ATP-dependent DNA helicase RecQ 0.69 HP15_487 DNA repair protein RadA low > 73
Agrobacterium fabrum C58 0.44 Atu0061 ATP-dependent DNA helicase 0.41 Atu1077 DNA repair protein low > 89
Rhodanobacter sp. FW510-T8 0.44 OKGIIK_02375 recQ DNA helicase RecQ 0.58 OKGIIK_09580 radA DNA repair protein RadA low > 52
Rhizobium sp. OAE497 0.44 ABIE40_RS12745 DNA helicase RecQ 0.41 ABIE40_RS06280 DNA repair protein RadA low > 107
Pseudomonas sp. S08-1 0.43 OH686_20670 ATP-dependent DNA helicase RecQ 0.63 OH686_16185 DNA repair protein RadA low > 80
Echinicola vietnamensis KMM 6221, DSM 17526 0.43 Echvi_0784 ATP-dependent DNA helicase RecQ 0.41 Echvi_1031 DNA repair protein RadA low > 79
Variovorax sp. OAS795 0.43 ABID97_RS03395 DNA helicase RecQ 0.52 ABID97_RS03770 DNA repair protein RadA low > 91
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS19310 ATP-dependent DNA helicase RecQ 0.55 RR42_RS12030 DNA repair protein RadA — —
Azospirillum brasilense Sp245 0.42 AZOBR_RS02840 ATP-dependent DNA helicase RecQ 0.42 AZOBR_RS08320 DNA repair protein RadA 0.73 5
Magnetospirillum magneticum AMB-1 0.42 AMB_RS21505 DNA helicase RecQ 0.42 AMB_RS10555 DNA repair protein RadA low > 64
Sinorhizobium meliloti 1021 0.42 SMc01566 ATP-dependent DNA helicase 0.40 SMc00556 DNA repair protein RadA low > 103
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.1476.1 ATP-dependent DNA helicase RecQ 0.59 Xcc-8004.3812.1 DNA repair protein RadA low > 74
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS02880 DNA helicase RecQ 0.54 ABZR87_RS11670 DNA repair protein RadA low > 80
Burkholderia phytofirmans PsJN 0.42 BPHYT_RS18145 ATP-dependent DNA helicase RecQ 0.54 BPHYT_RS12235 DNA repair protein RadA low > 109
Bacteroides stercoris CC31F 0.42 HMPREF1181_RS14110 DNA helicase RecQ 0.40 HMPREF1181_RS00075 DNA repair protein RadA low > 56
Paraburkholderia sabiae LMG 24235 0.42 QEN71_RS28295 DNA helicase RecQ 0.55 QEN71_RS06320 DNA repair protein RadA low > 153
Paraburkholderia graminis OAS925 0.42 ABIE53_003792 ATP-dependent DNA helicase RecQ 0.54 ABIE53_002526 DNA repair protein RadA/Sms low > 113
Rhodopseudomonas palustris CGA009 0.42 TX73_025080 DNA helicase RecQ 0.41 TX73_015980 DNA repair protein RadA low > 86
Phaeobacter inhibens DSM 17395 0.42 PGA1_c31900 ATP-dependent DNA helicase RecQ 0.41 PGA1_c10840 DNA repair protein RadA low > 62
Azospirillum sp. SherDot2 0.42 MPMX19_00123 ATP-dependent DNA helicase RecQ 0.42 MPMX19_00904 DNA repair protein RadA 0.40 72
Ralstonia solanacearum UW163 0.41 UW163_RS06400 DNA helicase RecQ 0.53 UW163_RS13540 DNA repair protein RadA — —
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS07220 DNA helicase RecQ 0.53 RALBFv3_RS00210 DNA repair protein RadA low > 76
Bacteroides thetaiotaomicron VPI-5482 0.41 BT1848 ATP-dependent DNA helicase recQ (NCBI ptt file) 0.40 BT2406 putative DNA repair protein (NCBI ptt file) 0.44 36
Paraburkholderia bryophila 376MFSha3.1 0.41 H281DRAFT_06595 ATP-dependent DNA helicase RecQ 0.54 H281DRAFT_00590 DNA replication and repair protein RadA — —
Bacteroides ovatus ATCC 8483 0.41 BACOVA_04594 ATP-dependent DNA helicase RecQ 0.40 BACOVA_03019 DNA repair protein RadA low > 94
Dinoroseobacter shibae DFL-12 0.41 Dshi_3334 ATP-dependent DNA helicase RecQ (RefSeq) 0.40 Dshi_2129 DNA repair protein RadA (RefSeq) 0.68 1
Ralstonia solanacearum PSI07 0.41 RPSI07_RS10025 DNA helicase RecQ 0.53 RPSI07_RS17270 DNA repair protein RadA low > 81
Ralstonia solanacearum GMI1000 0.41 RS_RS15155 DNA helicase RecQ 0.53 RS_RS06880 DNA repair protein RadA low > 80
Lysobacter sp. OAE881 0.41 ABIE51_RS05145 DNA helicase RecQ 0.57 ABIE51_RS07685 DNA repair protein RadA low > 62
Castellaniella sp019104865 MT123 0.41 ABCV34_RS07985 DNA helicase RecQ 0.52 ABCV34_RS02345 DNA repair protein RadA low > 48
Acidovorax sp. GW101-3H11 0.41 Ac3H11_3308 ATP-dependent DNA helicase RecQ 0.51 Ac3H11_3371 DNA repair protein RadA 0.67 4
Parabacteroides merdae CL09T00C40 0.41 HMPREF1078_RS01195 DNA helicase RecQ 0.41 HMPREF1078_RS08395 DNA repair protein RadA low > 61
Hydrogenophaga sp. GW460-11-11-14-LB1 0.40 GFF1958 ATP-dependent DNA helicase RecQ 0.50 GFF1833 DNA repair protein RadA low > 90
Variovorax sp. SCN45 0.40 GFF6415 ATP-dependent DNA helicase RecQ 0.52 GFF5087 DNA repair protein RadA low > 127
Rhodospirillum rubrum S1H 0.40 Rru_A0089 ATP-dependent DNA helicase RecQ (NCBI) 0.39 Rru_A0406 DNA repair protein RadA (NCBI) low > 58
Bosea sp. OAE506 0.40 ABIE41_RS04160 DNA helicase RecQ 0.41 ABIE41_RS17800 DNA repair protein RadA low > 77
Pedobacter sp. GW460-11-11-14-LB5 0.38 CA265_RS08905 DNA helicase RecQ 0.39 CA265_RS22660 DNA repair protein RadA low > 88
Sphingomonas koreensis DSMZ 15582 0.37 Ga0059261_2261 ATP-dependent DNA helicase RecQ 0.39 Ga0059261_0751 DNA repair protein RadA low > 68
Brevundimonas sp. GW460-12-10-14-LB2 0.36 A4249_RS14575 DNA helicase RecQ 0.39 A4249_RS03745 DNA repair protein RadA low > 48
Fusobacterium nucleatum SB010 0.34 HUW76_07235 DNA helicase RecQ 0.32 HUW76_02270 DNA repair protein RadA low > 35
Bifidobacterium breve UCC2003 0.34 BBR_RS13150 DNA helicase RecQ 0.35 BBR_RS18740 DNA repair protein RadA low > 34
Caulobacter crescentus NA1000 0.33 CCNA_03578 ATP-dependent DNA helicase recQ 0.41 CCNA_01732 DNA repair protein RadA low > 66
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_03578 ATP-dependent DNA helicase recQ 0.41 CCNA_01732 DNA repair protein RadA low > 67

Not shown: 0 genomes with orthologs for b3822 only; 6 genomes with orthologs for b4389 only