Conservation of cofitness between b2733 and b4375 in Escherichia coli BW25113

93 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2733 mutS DNA mismatch repair protein (NCBI) 1.0 b4375 prfC peptide chain release factor 3 (NCBI) 0.22 20
Escherichia coli BL21 1.00 ECD_02583 methyl-directed mismatch repair protein 1.00 ECD_04250 peptide chain release factor RF-3 low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01000 DNA mismatch repair protein MutS 1.00 OHPLBJKB_03687 Peptide chain release factor RF3 low > 73
Escherichia coli ECRC101 1.00 OKFHMN_20525 mutS DNA mismatch repair protein MutS 1.00 OKFHMN_11280 prfC peptide chain release factor 3 — —
Escherichia coli ECRC101 1.00 MCAODC_11050 mutS DNA mismatch repair protein MutS 1.00 MCAODC_01795 prfC peptide chain release factor 3 — —
Escherichia coli ECRC99 1.00 KEDOAH_07610 mutS DNA mismatch repair protein MutS 1.00 KEDOAH_16865 prfC peptide chain release factor 3 — —
Escherichia coli ECRC102 1.00 NIAGMN_18295 mutS DNA mismatch repair protein MutS 1.00 NIAGMN_09130 prfC peptide chain release factor 3 — —
Escherichia coli ECRC98 1.00 JDDGAC_24190 mutS DNA mismatch repair protein MutS 1.00 JDDGAC_14875 prfC peptide chain release factor 3 — —
Escherichia coli ECOR27 1.00 NOLOHH_12370 mutS DNA mismatch repair protein MutS 1.00 NOLOHH_03600 prfC peptide chain release factor 3 low > 57
Escherichia coli ECRC62 1.00 BNILDI_10920 mutS DNA mismatch repair protein MutS 1.00 BNILDI_08000 prfC peptide chain release factor 3 — —
Escherichia coli Nissle 1917 0.99 ECOLIN_RS15275 DNA mismatch repair protein MutS 1.00 ECOLIN_RS25110 peptide chain release factor 3 low > 52
Escherichia coli ECOR38 0.99 HEPCGN_19705 mutS DNA mismatch repair protein MutS 1.00 HEPCGN_09285 prfC peptide chain release factor 3 0.92 18
Escherichia fergusonii Becca 0.98 EFB2_01179 DNA mismatch repair protein MutS 1.00 EFB2_04072 Peptide chain release factor RF3 low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.93 GFF4773 DNA mismatch repair protein MutS 0.97 GFF1035 Peptide chain release factor 3 low > 78
Enterobacter sp. TBS_079 0.92 MPMX20_03619 DNA mismatch repair protein MutS 0.95 MPMX20_00673 Peptide chain release factor RF3 0.20 14
Enterobacter asburiae PDN3 0.92 EX28DRAFT_2829 DNA mismatch repair protein MutS 0.95 EX28DRAFT_3583 peptide chain release factor 3 low > 76
Klebsiella michiganensis M5al 0.92 BWI76_RS22600 DNA mismatch repair protein MutS 0.97 BWI76_RS04100 peptide chain release factor 3 low > 92
Dickeya dianthicola ME23 0.85 DZA65_RS05570 DNA mismatch repair protein MutS 0.91 DZA65_RS02505 peptide chain release factor 3 low > 75
Serratia liquefaciens MT49 0.85 IAI46_03800 DNA mismatch repair protein MutS 0.91 IAI46_02875 peptide chain release factor 3 low > 86
Dickeya dadantii 3937 0.85 DDA3937_RS05230 DNA mismatch repair protein MutS 0.91 DDA3937_RS02445 peptide chain release factor 3 low > 74
Dickeya dianthicola 67-19 0.85 HGI48_RS05230 DNA mismatch repair protein MutS 0.91 HGI48_RS02400 peptide chain release factor 3 — —
Erwinia tracheiphila SCR3 0.84 LU632_RS06485 mutS DNA mismatch repair protein MutS 0.89 LU632_RS02475 prfC peptide chain release factor 3 low > 74
Rahnella sp. WP5 0.84 EX31_RS07820 DNA mismatch repair protein MutS 0.91 EX31_RS04095 peptide chain release factor 3 — —
Pectobacterium carotovorum WPP14 0.84 HER17_RS16220 DNA mismatch repair protein MutS 0.91 HER17_RS19065 peptide chain release factor 3 low > 75
Pantoea sp. MT58 0.82 IAI47_04240 DNA mismatch repair protein MutS 0.91 IAI47_03375 peptide chain release factor 3 low > 76
Vibrio cholerae E7946 ATCC 55056 0.71 CSW01_02840 DNA mismatch repair protein MutS 0.86 CSW01_03470 peptide chain release factor 3 0.85 42
Shewanella sp. ANA-3 0.67 Shewana3_1125 DNA mismatch repair protein MutS (RefSeq) 0.79 Shewana3_1037 prfC peptide chain release factor 3 (RefSeq) low > 73
Shewanella loihica PV-4 0.66 Shew_1214 DNA mismatch repair protein (RefSeq) 0.79 Shew_2820 prfC peptide chain release factor 3 (RefSeq) low > 60
Shewanella amazonensis SB2B 0.65 Sama_1045 DNA mismatch repair protein MutS (RefSeq) 0.85 Sama_0968 prfC peptide chain release factor 3 (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.63 MIT1002_00953 DNA mismatch repair protein MutS 0.82 MIT1002_01192 Peptide chain release factor 3 low > 70
Marinobacter adhaerens HP15 0.60 HP15_1047 DNA mismatch repair protein MutS 0.80 HP15_541 peptide chain release factor 3 low > 73
Pseudomonas sp. RS175 0.58 PFR28_00429 DNA mismatch repair protein MutS 0.68 PFR28_00118 Peptide chain release factor RF3 — —
Pseudomonas fluorescens FW300-N2E2 0.58 Pf6N2E2_3035 DNA mismatch repair protein MutS 0.68 Pf6N2E2_3327 Peptide chain release factor 3 — —
Pseudomonas fluorescens FW300-N2C3 0.58 AO356_05875 DNA mismatch repair protein MutS 0.68 AO356_07285 peptide chain release factor 3 — —
Pseudomonas simiae WCS417 0.58 PS417_05680 DNA mismatch repair protein MutS 0.68 PS417_04030 peptide chain release factor 3 — —
Pseudomonas stutzeri RCH2 0.58 Psest_2875 DNA mismatch repair protein MutS 0.68 Psest_3351 peptide chain release factor 3 low > 67
Pseudomonas fluorescens FW300-N2E3 0.57 AO353_16625 DNA mismatch repair protein MutS 0.68 AO353_05420 peptide chain release factor 3 low > 101
Pseudomonas putida KT2440 0.57 PP_1626 DNA mismatch repair protein MutS 0.67 PP_0872 Peptide chain release factor 3 low > 96
Pseudomonas syringae pv. syringae B728a 0.57 Psyr_1376 DNA mismatch repair protein MutS 0.67 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.57 Psyr_1376 DNA mismatch repair protein MutS 0.67 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) — —
Pseudomonas fluorescens GW456-L13 0.57 PfGW456L13_4672 DNA mismatch repair protein MutS 0.68 PfGW456L13_5060 Peptide chain release factor 3 low > 87
Pseudomonas fluorescens SBW25-INTG 0.57 PFLU_RS05765 DNA mismatch repair protein MutS 0.68 PFLU_RS04070 peptide chain release factor 3 low > 109
Pseudomonas fluorescens SBW25 0.57 PFLU_RS05765 DNA mismatch repair protein MutS 0.68 PFLU_RS04070 peptide chain release factor 3 low > 109
Pseudomonas sp. S08-1 0.57 OH686_18195 DNA mismatch repair protein MutS 0.68 OH686_08765 peptide chain release factor 3 — —
Dyella japonica UNC79MFTsu3.2 0.55 ABZR86_RS00630 DNA mismatch repair protein MutS 0.67 ABZR86_RS19000 peptide chain release factor 3 — —
Lysobacter sp. OAE881 0.54 ABIE51_RS07785 DNA mismatch repair protein MutS 0.66 ABIE51_RS16210 peptide chain release factor 3 — —
Rhodanobacter denitrificans MT42 0.54 LRK55_RS14650 DNA mismatch repair protein MutS 0.66 LRK55_RS05155 peptide chain release factor 3 — —
Rhodanobacter sp. FW510-T8 0.53 OKGIIK_03705 mutS DNA mismatch repair protein MutS 0.66 OKGIIK_01430 prfC peptide chain release factor 3 — —
Rhodanobacter denitrificans FW104-10B01 0.53 LRK54_RS14935 DNA mismatch repair protein MutS 0.66 LRK54_RS05380 peptide chain release factor 3 — —
Kangiella aquimarina DSM 16071 0.52 B158DRAFT_1529 DNA mismatch repair protein MutS 0.76 B158DRAFT_2239 peptide chain release factor 3 low > 40
Xanthomonas campestris pv. campestris strain 8004 0.51 Xcc-8004.3760.1 DNA mismatch repair protein MutS 0.63 Xcc-8004.1590.1 Peptide chain release factor 3 — —
Paraburkholderia bryophila 376MFSha3.1 0.49 H281DRAFT_00537 DNA mismatch repair protein MutS 0.52 H281DRAFT_03538 bacterial peptide chain release factor 3 (bRF-3) low > 103
Ralstonia sp. UNC404CL21Col 0.49 ABZR87_RS10580 DNA mismatch repair protein MutS 0.61 ABZR87_RS23485 peptide chain release factor 3 low > 80
Cupriavidus basilensis FW507-4G11 0.49 RR42_RS06285 DNA mismatch repair protein MutS 0.61 RR42_RS37475 peptide chain release factor 3 0.37 50
Dechlorosoma suillum PS 0.49 Dsui_2244 DNA mismatch repair protein MutS 0.60 Dsui_2418 peptide chain release factor 3 low > 51
Ralstonia solanacearum UW163 0.49 UW163_RS12390 DNA mismatch repair protein MutS 0.61 UW163_RS16595 peptide chain release factor 3 — —
Ralstonia solanacearum PSI07 0.49 RPSI07_RS18440 DNA mismatch repair protein MutS 0.61 RPSI07_RS07810 peptide chain release factor 3 low > 81
Ralstonia solanacearum IBSBF1503 0.49 RALBFv3_RS14920 DNA mismatch repair protein MutS 0.61 RALBFv3_RS23345 peptide chain release factor 3 low > 76
Ralstonia solanacearum GMI1000 0.49 RS_RS05735 DNA mismatch repair protein MutS 0.61 RS_RS25080 peptide chain release factor 3 low > 80
Herbaspirillum seropedicae SmR1 0.49 HSERO_RS16360 DNA mismatch repair protein MutS 0.62 HSERO_RS14640 peptide chain release factor 3 low > 78
Paraburkholderia graminis OAS925 0.49 ABIE53_002719 DNA mismatch repair protein MutS 0.52 ABIE53_004717 peptide chain release factor 3 low > 113
Burkholderia phytofirmans PsJN 0.48 BPHYT_RS12475 DNA mismatch repair protein MutS 0.52 BPHYT_RS34275 peptide chain release factor 3 low > 109
Acinetobacter radioresistens SK82 0.47 MPMX26_01954 DNA mismatch repair protein MutS 0.67 MPMX26_00476 Peptide chain release factor RF3 low > 36
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS06085 DNA mismatch repair protein MutS 0.51 QEN71_RS17200 peptide chain release factor 3 low > 153
Castellaniella sp019104865 MT123 0.44 ABCV34_RS00270 DNA mismatch repair protein MutS 0.54 ABCV34_RS12505 peptide chain release factor 3 low > 48
Acidovorax sp. GW101-3H11 0.44 Ac3H11_3641 DNA mismatch repair protein MutS 0.52 Ac3H11_3041 Peptide chain release factor 3 — —
Variovorax sp. SCN45 0.44 GFF6634 DNA mismatch repair protein MutS 0.52 GFF2045 Peptide chain release factor 3 low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF3599 DNA mismatch repair protein MutS 0.52 GFF768 Peptide chain release factor 3 0.62 29
Bacteroides ovatus ATCC 8483 0.36 BACOVA_02824 DNA mismatch repair protein MutS 0.47 BACOVA_04458 peptide chain release factor 3 low > 94
Phocaeicola vulgatus CL09T03C04 0.36 HMPREF1058_RS11435 DNA mismatch repair protein MutS 0.48 HMPREF1058_RS07935 peptide chain release factor 3 — —
Bacteroides stercoris CC31F 0.36 HMPREF1181_RS01980 DNA mismatch repair protein MutS 0.47 HMPREF1181_RS05585 peptide chain release factor 3 low > 56
Phocaeicola dorei CL03T12C01 0.36 ABI39_RS05500 DNA mismatch repair protein MutS 0.48 ABI39_RS00385 peptide chain release factor 3 — —
Bacteroides thetaiotaomicron VPI-5482 0.36 BT3121 DNA mismatch repair protein mutS (NCBI ptt file) 0.47 BT1729 peptide chain release factor 3 (RF-3) (NCBI ptt file) low > 81
Parabacteroides merdae CL09T00C40 0.35 HMPREF1078_RS06455 DNA mismatch repair protein MutS 0.49 HMPREF1078_RS04145 peptide chain release factor 3 low > 61
Dinoroseobacter shibae DFL-12 0.35 Dshi_3466 DNA mismatch repair protein MutS (RefSeq) 0.44 Dshi_1336 peptide chain release factor 3 (RefSeq) low > 64
Echinicola vietnamensis KMM 6221, DSM 17526 0.35 Echvi_0960 DNA mismatch repair protein MutS 0.51 Echvi_0584 peptide chain release factor 3 low > 79
Pedobacter sp. GW460-11-11-14-LB5 0.34 CA265_RS08220 DNA mismatch repair protein MutS 0.48 CA265_RS18435 peptide chain release factor 3 low > 88
Synechococcus elongatus PCC 7942 0.34 Synpcc7942_2247 mutS DNA mismatch repair protein 0.44 Synpcc7942_2365 prfC peptide chain release factor 3 low > 38
Azospirillum sp. SherDot2 0.33 MPMX19_00908 DNA mismatch repair protein MutS 0.50 MPMX19_01192 Peptide chain release factor 3 — —
Phaeobacter inhibens DSM 17395 0.33 PGA1_c35000 DNA mismatch repair protein MutS 0.46 PGA1_c10620 peptide chain release factor 3 — —
Rhodospirillum rubrum S1H 0.33 Rru_A3541 MutS 1 protein (NCBI) 0.51 Rru_A2497 Peptide chain release factor 3 (NCBI) low > 58
Azospirillum brasilense Sp245 0.33 AZOBR_RS02125 DNA mismatch repair protein MutS 0.52 AZOBR_RS14730 peptide chain release factor 3 — —
Desulfovibrio vulgaris Miyazaki F 0.32 DvMF_0355 DNA mismatch repair protein MutS (RefSeq) 0.59 DvMF_2372 prfC peptide chain release factor 3 (RefSeq) low > 51
Magnetospirillum magneticum AMB-1 0.32 AMB_RS01455 DNA mismatch repair protein MutS 0.52 AMB_RS01375 peptide chain release factor 3 — —
Rhodopseudomonas palustris CGA009 0.32 TX73_002655 DNA mismatch repair protein MutS 0.47 TX73_011820 peptide chain release factor 3 low > 86
Agrobacterium fabrum C58 0.32 Atu0345 DNA mismatch repair protein, MutS family 0.46 Atu0315 peptide chain release factor 3 — —
Sphingomonas koreensis DSMZ 15582 0.32 Ga0059261_3784 DNA mismatch repair protein MutS 0.47 Ga0059261_2044 peptide chain release factor 3 low > 68
Desulfovibrio vulgaris Hildenborough JW710 0.32 DVU1649 mutS DNA mismatch repair protein MutS (TIGR) 0.59 DVU3116 prfC peptide chain release factor 3 (TIGR) low > 55
Rhizobium sp. OAE497 0.31 ABIE40_RS01775 DNA mismatch repair protein MutS 0.47 ABIE40_RS01450 peptide chain release factor 3 low > 107
Sinorhizobium meliloti 1021 0.31 SMc01125 DNA mismatch repair protein MutS 0.49 SMc00427 peptide chain release factor RF-3 protein low > 103
Bosea sp. OAE506 0.30 ABIE41_RS03650 DNA mismatch repair protein MutS 0.47 ABIE41_RS06180 peptide chain release factor 3 0.33 46
Brevundimonas sp. GW460-12-10-14-LB2 0.28 A4249_RS12110 DNA mismatch repair protein MutS 0.43 A4249_RS15275 peptide chain release factor 3 low > 48
Caulobacter crescentus NA1000 0.28 CCNA_00012 DNA mismatch repair protein MutS 0.43 CCNA_01123 peptide chain release factor RF-3 low > 66
Caulobacter crescentus NA1000 Δfur 0.28 CCNA_00012 DNA mismatch repair protein MutS 0.43 CCNA_01123 peptide chain release factor RF-3 low > 67

Not shown: 6 genomes with orthologs for b2733 only; 0 genomes with orthologs for b4375 only