Conservation of cofitness between b3822 and b0472 in Escherichia coli BW25113

94 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3822 recQ ATP-dependent DNA helicase (NCBI) 1.0 b0472 recR recombination protein RecR (NCBI) 0.40 3
Escherichia coli Nissle 1917 1.00 ECOLIN_RS21935 ATP-dependent DNA helicase RecQ 1.00 ECOLIN_RS02805 recombination mediator RecR — —
Escherichia fergusonii Becca 1.00 EFB2_04815 ATP-dependent DNA helicase RecQ 1.00 EFB2_03586 Recombination protein RecR low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_04229 ATP-dependent DNA helicase RecQ 1.00 OHPLBJKB_03202 Recombination protein RecR 0.56 50
Escherichia coli ECRC62 1.00 BNILDI_05040 recQ ATP-dependent DNA helicase RecQ 1.00 BNILDI_22505 recR recombination mediator RecR — —
Escherichia coli ECRC99 1.00 KEDOAH_13790 recQ ATP-dependent DNA helicase RecQ 1.00 KEDOAH_19810 recR recombination mediator RecR — —
Escherichia coli ECRC98 1.00 JDDGAC_17985 recQ ATP-dependent DNA helicase RecQ 1.00 JDDGAC_11805 recR recombination mediator RecR — —
Escherichia coli ECRC101 1.00 OKFHMN_14360 recQ ATP-dependent DNA helicase RecQ 1.00 OKFHMN_08155 recR recombination mediator RecR — —
Escherichia coli ECOR38 1.00 HEPCGN_13060 recQ ATP-dependent DNA helicase RecQ 1.00 HEPCGN_06770 recR recombination mediator RecR low > 85
Escherichia coli ECRC101 1.00 MCAODC_04865 recQ ATP-dependent DNA helicase RecQ 1.00 MCAODC_27380 recR recombination mediator RecR — —
Escherichia coli ECOR27 1.00 NOLOHH_06490 recQ ATP-dependent DNA helicase RecQ 1.00 NOLOHH_01085 recR recombination mediator RecR low > 57
Escherichia coli ECRC102 1.00 NIAGMN_12115 recQ ATP-dependent DNA helicase RecQ 1.00 NIAGMN_06210 recR recombination mediator RecR — —
Escherichia coli BL21 1.00 ECD_03701 ATP-dependent DNA helicase 1.00 ECD_00423 gap repair protein 0.78 5
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF248 ATP-dependent DNA helicase RecQ 0.96 GFF4390 Recombination protein RecR 0.64 5
Enterobacter sp. TBS_079 0.93 MPMX20_04458 ATP-dependent DNA helicase RecQ 0.96 MPMX20_01074 Recombination protein RecR low > 85
Enterobacter asburiae PDN3 0.92 EX28DRAFT_4487 ATP-dependent DNA helicase RecQ 0.95 EX28DRAFT_2485 DNA replication and repair protein RecR low > 76
Klebsiella michiganensis M5al 0.92 BWI76_RS01245 DNA helicase RecQ 0.96 BWI76_RS06830 recombination protein RecR 0.23 20
Pectobacterium carotovorum WPP14 0.82 HER17_RS01395 ATP-dependent DNA helicase RecQ 0.89 HER17_RS15695 recombination mediator RecR low > 75
Erwinia tracheiphila SCR3 0.82 LU632_RS24095 recQ ATP-dependent DNA helicase RecQ 0.89 LU632_RS18105 recR recombination mediator RecR low > 74
Pantoea sp. MT58 0.82 IAI47_18360 ATP-dependent DNA helicase RecQ 0.90 IAI47_14465 recombination protein RecR low > 76
Rahnella sp. WP5 0.81 EX31_RS15210 ATP-dependent DNA helicase RecQ 0.90 EX31_RS22525 recombination protein RecR low > 89
Serratia liquefaciens MT49 0.81 IAI46_00770 ATP-dependent DNA helicase RecQ 0.91 IAI46_05240 recombination protein RecR 0.73 6
Dickeya dianthicola ME23 0.80 DZA65_RS21045 ATP-dependent DNA helicase RecQ 0.89 DZA65_RS06165 recombination protein RecR low > 75
Dickeya dianthicola 67-19 0.80 HGI48_RS20005 ATP-dependent DNA helicase RecQ 0.89 HGI48_RS05840 recombination protein RecR — —
Dickeya dadantii 3937 0.80 DDA3937_RS19850 ATP-dependent DNA helicase RecQ 0.90 DDA3937_RS05790 recombination protein RecR low > 74
Vibrio cholerae E7946 ATCC 55056 0.67 CSW01_01045 DNA helicase RecQ 0.80 CSW01_05375 recombination protein RecR 0.53 46
Shewanella oneidensis MR-1 0.58 SO4241 recQ ATP-dependent DNA helicase RecQ (NCBI ptt file) 0.64 SO2015 recR recombination protein RecR (NCBI ptt file) 0.68 3
Shewanella sp. ANA-3 0.58 Shewana3_3763 ATP-dependent DNA helicase RecQ (RefSeq) 0.65 Shewana3_2444 recR recombination protein RecR (RefSeq) 0.76 6
Shewanella amazonensis SB2B 0.58 Sama_0333 ATP-dependent DNA helicase RecQ (RefSeq) 0.64 Sama_1312 recR recombination protein RecR (RefSeq) 0.72 5
Shewanella loihica PV-4 0.57 Shew_3474 ATP-dependent DNA helicase RecQ (RefSeq) 0.67 Shew_2233 recombination protein RecR (RefSeq) 0.53 25
Alteromonas macleodii MIT1002 0.53 MIT1002_00148 ATP-dependent DNA helicase RecQ 0.67 MIT1002_02649 Recombination protein RecR low > 70
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_4423 ATP-dependent DNA helicase RecQ 0.60 PfGW456L13_4074 Recombination protein RecR 0.29 34
Pontibacter actiniarum KMM 6156, DSM 19842 0.45 CA264_07560 DNA helicase RecQ 0.40 CA264_01105 recombination protein RecR 0.53 18
Pseudomonas putida KT2440 0.45 PP_4516 ATP-dependent DNA 3 0.64 PP_4267 Recombination protein RecR low > 96
Pseudomonas sp. RS175 0.45 PFR28_00788 ATP-dependent DNA helicase RecQ 0.61 PFR28_01077 Recombination protein RecR low > 88
Herbaspirillum seropedicae SmR1 0.45 HSERO_RS02465 ATP-dependent DNA helicase RecQ 0.50 HSERO_RS18355 recombinase RecR 0.63 2
Pseudomonas fluorescens FW300-N2C3 0.45 AO356_04050 ATP-dependent DNA helicase RecQ 0.61 AO356_02495 recombination protein RecR 0.21 58
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_2645 ATP-dependent DNA helicase RecQ 0.61 Pf6N2E2_2325 Recombination protein RecR 0.35 8
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_3533 ATP-dependent DNA helicase RecQ 0.61 Pf1N1B4_3864 Recombination protein RecR low > 87
Pseudomonas fluorescens SBW25 0.45 PFLU_RS21920 DNA helicase RecQ 0.62 PFLU_RS22415 recombination protein RecR low > 109
Pseudomonas fluorescens SBW25-INTG 0.45 PFLU_RS21920 DNA helicase RecQ 0.62 PFLU_RS22415 recombination protein RecR low > 109
Pseudomonas simiae WCS417 0.45 PS417_19950 ATP-dependent DNA helicase RecQ 0.62 PS417_20800 recombination protein RecR 0.25 5
Phocaeicola vulgatus CL09T03C04 0.44 HMPREF1058_RS14585 DNA helicase RecQ 0.35 HMPREF1058_RS18560 recombination protein RecR low > 67
Mucilaginibacter yixingensis YX-36 DSM 26809 0.44 ABZR88_RS20865 DNA helicase RecQ 0.37 ABZR88_RS10695 recombination mediator RecR low > 71
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS13000 DNA helicase RecQ 0.57 LRK54_RS01250 recombination mediator RecR low > 59
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_18430 ATP-dependent DNA helicase RecQ 0.61 AO353_00675 recombination protein RecR 0.34 26
Dechlorosoma suillum PS 0.44 Dsui_3092 ATP-dependent DNA helicase RecQ 0.52 Dsui_1811 recombination protein RecR low > 51
Pseudomonas stutzeri RCH2 0.44 Psest_1869 ATP-dependent DNA helicase RecQ 0.61 Psest_2545 recombination protein RecR 0.61 4
Phocaeicola dorei CL03T12C01 0.44 ABI39_RS10235 DNA helicase RecQ 0.35 ABI39_RS14870 recombination protein RecR low > 72
Pseudomonas syringae pv. syringae B728a ΔmexB 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ 0.61 Psyr_3396 DNA replication and repair protein RecR 0.49 7
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS19925 DNA helicase RecQ 0.57 ABZR86_RS06235 recombination mediator RecR 0.51 3
Rhodanobacter denitrificans MT42 0.44 LRK55_RS12700 DNA helicase RecQ 0.57 LRK55_RS01020 recombination mediator RecR low > 63
Pseudomonas syringae pv. syringae B728a 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ 0.61 Psyr_3396 DNA replication and repair protein RecR 0.37 7
Marinobacter adhaerens HP15 0.44 HP15_1718 ATP-dependent DNA helicase RecQ 0.60 HP15_1883 recombination protein RecR — —
Agrobacterium fabrum C58 0.44 Atu0061 ATP-dependent DNA helicase 0.35 Atu0093 Recombination protein low > 89
Rhizobium sp. OAE497 0.44 ABIE40_RS12745 DNA helicase RecQ 0.35 ABIE40_RS00300 recombination mediator RecR low > 107
Rhodanobacter sp. FW510-T8 0.44 OKGIIK_02375 recQ DNA helicase RecQ 0.57 OKGIIK_05655 recR recombination mediator RecR low > 52
Pseudomonas sp. S08-1 0.43 OH686_20670 ATP-dependent DNA helicase RecQ 0.60 OH686_02385 recombination protein RecR low > 80
Echinicola vietnamensis KMM 6221, DSM 17526 0.43 Echvi_0784 ATP-dependent DNA helicase RecQ 0.36 Echvi_1987 recombination protein RecR low > 79
Variovorax sp. OAS795 0.43 ABID97_RS03395 DNA helicase RecQ 0.50 ABID97_RS14700 recombination mediator RecR low > 91
Azospirillum brasilense Sp245 0.42 AZOBR_RS02840 ATP-dependent DNA helicase RecQ 0.37 AZOBR_RS03880 recombinase RecR 0.71 6
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS19310 ATP-dependent DNA helicase RecQ 0.49 RR42_RS13270 recombination protein RecR 0.42 26
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.1476.1 ATP-dependent DNA helicase RecQ 0.54 Xcc-8004.4012.1 Recombination protein RecR low > 74
Magnetospirillum magneticum AMB-1 0.42 AMB_RS21505 DNA helicase RecQ 0.37 AMB_RS20755 recombination protein RecR low > 64
Sinorhizobium meliloti 1021 0.42 SMc01566 ATP-dependent DNA helicase 0.36 SMc02908 recombination protein RecR low > 103
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS02880 DNA helicase RecQ 0.51 ABZR87_RS10810 recombination mediator RecR low > 80
Bacteroides stercoris CC31F 0.42 HMPREF1181_RS14110 DNA helicase RecQ 0.35 HMPREF1181_RS16455 recombination protein RecR low > 56
Burkholderia phytofirmans PsJN 0.42 BPHYT_RS18145 ATP-dependent DNA helicase RecQ 0.48 BPHYT_RS09070 recombination protein RecR low > 109
Paraburkholderia sabiae LMG 24235 0.42 QEN71_RS28295 DNA helicase RecQ 0.48 QEN71_RS22285 recombination mediator RecR low > 153
Paraburkholderia graminis OAS925 0.42 ABIE53_003792 ATP-dependent DNA helicase RecQ 0.48 ABIE53_002048 recombination protein RecR low > 113
Phaeobacter inhibens DSM 17395 0.42 PGA1_c31900 ATP-dependent DNA helicase RecQ 0.34 PGA1_c30290 recombination protein RecR low > 62
Rhodopseudomonas palustris CGA009 0.42 TX73_025080 DNA helicase RecQ 0.38 TX73_003195 recombination mediator RecR — —
Azospirillum sp. SherDot2 0.42 MPMX19_00123 ATP-dependent DNA helicase RecQ 0.38 MPMX19_02195 Recombination protein RecR 0.45 40
Ralstonia solanacearum UW163 0.41 UW163_RS06400 DNA helicase RecQ 0.48 UW163_RS12640 recombination protein RecR — —
Paraburkholderia bryophila 376MFSha3.1 0.41 H281DRAFT_06595 ATP-dependent DNA helicase RecQ 0.49 H281DRAFT_00834 DNA replication and repair protein RecR — —
Bacteroides thetaiotaomicron VPI-5482 0.41 BT1848 ATP-dependent DNA helicase recQ (NCBI ptt file) 0.35 BT1081 recombination protein recR (NCBI ptt file) low > 81
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS07220 DNA helicase RecQ 0.48 RALBFv3_RS15170 recombination protein RecR low > 76
Dinoroseobacter shibae DFL-12 0.41 Dshi_3334 ATP-dependent DNA helicase RecQ (RefSeq) 0.36 Dshi_0648 recombination protein RecR (RefSeq) 0.42 16
Ralstonia solanacearum GMI1000 0.41 RS_RS15155 DNA helicase RecQ 0.48 RS_RS05980 recombination protein RecR low > 80
Ralstonia solanacearum PSI07 0.41 RPSI07_RS10025 DNA helicase RecQ 0.48 RPSI07_RS18205 recombination protein RecR low > 81
Lysobacter sp. OAE881 0.41 ABIE51_RS05145 DNA helicase RecQ 0.57 ABIE51_RS14010 recombination mediator RecR low > 62
Castellaniella sp019104865 MT123 0.41 ABCV34_RS07985 DNA helicase RecQ 0.42 ABCV34_RS15480 recombination mediator RecR low > 48
Acidovorax sp. GW101-3H11 0.41 Ac3H11_3308 ATP-dependent DNA helicase RecQ 0.44 Ac3H11_473 Recombination protein RecR 0.55 20
Parabacteroides merdae CL09T00C40 0.41 HMPREF1078_RS01195 DNA helicase RecQ 0.36 HMPREF1078_RS07615 recombination mediator RecR low > 61
Hydrogenophaga sp. GW460-11-11-14-LB1 0.40 GFF1958 ATP-dependent DNA helicase RecQ 0.51 GFF4253 Recombination protein RecR 0.43 66
Variovorax sp. SCN45 0.40 GFF6415 ATP-dependent DNA helicase RecQ 0.49 GFF1110 Recombination protein RecR low > 127
Rhodospirillum rubrum S1H 0.40 Rru_A0089 ATP-dependent DNA helicase RecQ (NCBI) 0.39 Rru_A3471 RecR protein (NCBI) — —
Bosea sp. OAE506 0.40 ABIE41_RS04160 DNA helicase RecQ 0.36 ABIE41_RS04035 recombination mediator RecR — —
Pedobacter sp. GW460-11-11-14-LB5 0.38 CA265_RS08905 DNA helicase RecQ 0.36 CA265_RS04980 recombination protein RecR low > 88
Sphingomonas koreensis DSMZ 15582 0.37 Ga0059261_2261 ATP-dependent DNA helicase RecQ 0.38 Ga0059261_0645 DNA replication and repair protein RecR low > 68
Brevundimonas sp. GW460-12-10-14-LB2 0.36 A4249_RS14575 DNA helicase RecQ 0.33 A4249_RS15115 recombination mediator RecR low > 48
Fusobacterium nucleatum SB010 0.34 HUW76_07235 DNA helicase RecQ 0.37 HUW76_08785 recombination protein RecR low > 35
Bifidobacterium breve UCC2003 0.34 BBR_RS13150 DNA helicase RecQ 0.37 BBR_RS10990 recombination protein RecR low > 34
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_03578 ATP-dependent DNA helicase recQ 0.34 CCNA_00270 Recombination protein recR low > 67
Caulobacter crescentus NA1000 0.33 CCNA_03578 ATP-dependent DNA helicase recQ 0.34 CCNA_00270 Recombination protein recR 0.69 11

Not shown: 1 genomes with orthologs for b3822 only; 6 genomes with orthologs for b0472 only