Homologs of Xcc-8004.3669.1 from Xanthomonas campestris pv. campestris strain 8004

23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-)
SEED: 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-)
KEGG: RNA methyltransferase, TrmA family

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3669.1 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) insig. 100 100
o Lysobacter sp. OAE881 ABIE51_RS13830 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 70 98
o Rhodanobacter sp. FW510-T8 OKGIIK_07840 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 61 99
o Rhodanobacter denitrificans MT42 LRK55_RS16715 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 62 98
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS07120 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 63 97
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS17000 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD sig. 62 98
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS11940 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 61 99
o Marinobacter adhaerens HP15 HP15_790 23S rRNA 5-methyluridine methyltransferase insig. 47 97
o Castellaniella sp019104865 MT123 ABCV34_RS03050 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 49 97
o Kangiella aquimarina DSM 16071 B158DRAFT_2275 23S rRNA (uracil-5-)-methyltransferase RumA insig. 45 99
o Paraburkholderia sabiae LMG 24235 QEN71_RS22225 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 46 95
o Ralstonia sp. UNC404CL21Col ABZR87_RS10885 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 44 96
o Cupriavidus basilensis FW507-4G11 RR42_RS13170 23S rRNA methyltransferase insig. 45 96
o Acinetobacter radioresistens SK82 MPMX26_00538 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 44 95
o Burkholderia phytofirmans PsJN BPHYT_RS09125 23S rRNA methyltransferase insig. 43 96
o Methylophilus sp. DMC18 GFF916 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 45 98
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00846 23S rRNA m(5)U-1939 methyltransferase insig. 43 96
o Herbaspirillum seropedicae SmR1 HSERO_RS14825 23S rRNA methyltransferase insig. 44 96
o Ralstonia solanacearum PSI07 RPSI07_RS18130 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 44 96
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS15245 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 43 96
o Ralstonia solanacearum UW163 UW163_RS12710 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 43 96
o Ralstonia solanacearum GMI1000 RS_RS06055 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD sig. 44 96
o Acidovorax sp. GW101-3H11 Ac3H11_2847 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) insig. 43 96
o Acinetobacter baumannii LAC-4 RR41_RS16085 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 42 96
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3883 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) insig. 44 96
o Dechlorosoma suillum PS Dsui_1981 23S rRNA (uracil-5-)-methyltransferase RumA cofit 44 96
o Variovorax sp. SCN45 GFF2841 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) cofit 43 96
o Pseudomonas stutzeri RCH2 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA insig. 43 96
o Pseudomonas sp. DMC3 GFF4819 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 42 96
o Pectobacterium carotovorum WPP14 HER17_RS04110 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 41 96
o Pseudomonas lactucae CFBP13502 GEMAOFIL_04224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 43 96
o Pseudomonas fluorescens SBW25 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD strong 43 96
o Pseudomonas fluorescens SBW25-INTG PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD sig. 43 96
o Pseudomonas aeruginosa PA14 IKLFDK_04195 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 43 96
o Enterobacter asburiae PDN3 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA insig. 41 96
o Enterobacter sp. TBS_079 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 40 96
o Pseudomonas simiae WCS417 PS417_20155 23S rRNA methyltransferase insig. 43 96
o Escherichia coli ECOR38 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 39 99
o Escherichia coli BL21 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent insig. 38 99
o Escherichia coli ECOR27 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 38 99
o Klebsiella pneumoniae MKP103 KDGMDA_03340 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 38 98
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 38 99
o Escherichia coli BW25113 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) insig. 38 99
o Escherichia coli Nissle 1917 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 38 99
o Serratia liquefaciens MT49 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 39 99
o Escherichia coli ECRC62 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 38 99
o Escherichia fergusonii Becca EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 38 99
o Escherichia coli ECRC100 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 37 99
o Escherichia coli ECRC101 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 37 99
o Escherichia coli ECRC102 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 37 99
o Escherichia coli ECRC98 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 37 99
o Escherichia coli ECRC99 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD no data 37 99
o Erwinia amylovora T8 OLJFJH_09240 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 38 98
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) insig. 40 98
o Pseudomonas fluorescens FW300-N2C3 AO356_19055 23S rRNA methyltransferase insig. 42 96
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 strong 42 96
o Pseudomonas sp. S08-1 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA cofit 42 96
o Dickeya dianthicola ME23 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 39 99
o Shewanella loihica PV-4 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) cofit 39 96
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 strong 42 96
o Pseudomonas segetis P6 MPMX49_01653 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 41 96
o Klebsiella michiganensis M5al BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase sig. 38 98
o Dickeya dadantii 3937 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 39 99
o Shewanella sp. ANA-3 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) cofit 39 96
o Shewanella oneidensis MR-1 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) strong 39 96
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_17370 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 38 98
o Erwinia tracheiphila SCR3 LU632_RS06345 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 38 98
o Pseudomonas sp. RS175 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD strong 41 96
o Dickeya dianthicola 67-19 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 38 99
o Vibrio cholerae E7946 ATCC 55056 CSW01_12410 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 38 98
o Shewanella amazonensis SB2B Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) sig. 39 96
o Rahnella sp. WP5 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 38 99
o Pseudomonas sp. SVBP6 COO64_RS07330 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 42 96
o Pseudomonas fluorescens FW300-N2E3 AO353_02715 23S rRNA methyltransferase sig. 42 96
o Pantoea sp. MT58 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 37 97
o Pseudomonas sp. BP01 JOY50_RS23905 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 43 96
o Pseudomonas syringae pv. syringae B728a Psyr_3696 23S rRNA m(5)U-1939 methyltransferase insig. 41 96
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3696 23S rRNA m(5)U-1939 methyltransferase insig. 41 96
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS16855 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 37 95
o Pseudomonas putida KT2440 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD strong 42 96
o Pseudomonas fluorescens GW456-L13 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 sig. 41 96
  Paraburkholderia graminis OAS925 ABIE53_002060 tRNA/tmRNA/rRNA uracil-C5-methylase (TrmA/RlmC/RlmD family) sig. 45 66
o Alteromonas macleodii MIT1002 MIT1002_00793 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 34 98
o Desulfovibrio vulgaris Miyazaki F DvMF_1383 RNA methyltransferase, TrmA family (RefSeq) insig. 32 98
o Synechococcus elongatus PCC 7942 Synpcc7942_0241 rumA 23S rRNA (uracil-5-)-methyltransferase RumA cofit 29 96
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_02005 23S rRNA (uracil-5-)-methyltransferase RumA insig. 29 99
o Desulfovibrio vulgaris Hildenborough JW710 DVU0924 rumA 23S rRNA (uracil-5-)-methyltransferase RumA (TIGR) insig. 28 96
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS02375 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 27 97
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0172 23S rRNA (uracil-5-)-methyltransferase RumA insig. 27 99
o Synechocystis sp000284455 PCC 6803 SGL_RS06135 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 26 98
o Bosea sp. OAE506 ABIE41_RS22255 RNA methyltransferase insig. 31 96
o Xanthobacter sp. DMC5 GFF893 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 30 96
o Rhodopseudomonas palustris CGA009 TX73_004885 methyltransferase insig. 31 96
o Rhizobium sp. OAE497 ABIE40_RS03880 class I SAM-dependent RNA methyltransferase insig. 29 96
o Dinoroseobacter shibae DFL-12 Dshi_3492 (Uracil-5)-methyltransferase (RefSeq) insig. 30 97
o Agrobacterium fabrum C58 Atu0735 RNA methyltransferase insig. 28 96
o Sinorhizobium meliloti 1021 SMc00974 RNA methyltransferase insig. 30 96
o Caulobacter crescentus NA1000 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein sig. 29 96
o Caulobacter crescentus NA1000 Δfur CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein cofit 29 96
o Sphingobium sp. HT1-2 GFF99 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) cofit 30 88