Homologs of PfGW456L13_5112 from Pseudomonas fluorescens GW456-L13

tmRNA-binding protein SmpB
SEED: tmRNA-binding protein SmpB
KEGG: SsrA-binding protein

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas fluorescens GW456-L13 PfGW456L13_5112 tmRNA-binding protein SmpB insig. 100 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1184 tmRNA-binding protein SmpB no data 98 100
o Pseudomonas simiae WCS417 PS417_24095 SsrA-binding protein no data 97 100
o Pseudomonas fluorescens SBW25 PFLU_RS25935 SsrA-binding protein SmpB strong 96 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS25935 SsrA-binding protein SmpB no data 96 100
o Pseudomonas sp. RS175 PFR28_00065 SsrA-binding protein no data 94 100
o Pseudomonas fluorescens FW300-N2E3 AO353_05690 SsrA-binding protein strong 94 100
o Pseudomonas fluorescens FW300-N2C3 AO356_07540 SsrA-binding protein sig. 92 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3378 tmRNA-binding protein SmpB no data 92 100
o Pseudomonas putida KT2440 PP_4733 SsrA-binding protein no data 85 100
o Pseudomonas syringae pv. syringae B728a Psyr_4203 SsrA-binding protein sig. 86 100
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4203 SsrA-binding protein strong 86 100
o Pseudomonas stutzeri RCH2 Psest_0957 SsrA-binding protein no data 81 100
o Pseudomonas sp. S08-1 OH686_17025 SsrA-binding protein cofit 78 100
o Marinobacter adhaerens HP15 HP15_3090 SsrA-binding protein no data 67 96
o Kangiella aquimarina DSM 16071 B158DRAFT_0969 SsrA-binding protein strong 63 96
o Acinetobacter radioresistens SK82 MPMX26_00737 SsrA-binding protein strong 62 92
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4158 tmRNA-binding protein SmpB strong 55 99
o Variovorax sp. SCN45 GFF213 tmRNA-binding protein SmpB cofit 53 99
o Escherichia coli BL21 ECD_02508 tmRNA-binding trans-translation protein strong 56 97
o Escherichia fergusonii Becca EFB2_01273 SsrA-binding protein sig. 56 97
o Escherichia coli ECOR27 NOLOHH_12795 smpB SsrA-binding protein SmpB no data 56 97
o Escherichia coli ECOR38 HEPCGN_20245 smpB SsrA-binding protein SmpB no data 56 97
o Escherichia coli ECRC101 OKFHMN_21125 smpB SsrA-binding protein SmpB no data 56 97
o Escherichia coli ECRC101 MCAODC_11650 smpB SsrA-binding protein SmpB no data 56 97
o Escherichia coli ECRC102 NIAGMN_18895 smpB SsrA-binding protein SmpB no data 56 97
o Escherichia coli ECRC62 BNILDI_11600 smpB SsrA-binding protein SmpB insig. 56 97
o Escherichia coli ECRC98 JDDGAC_24790 smpB SsrA-binding protein SmpB no data 56 97
o Escherichia coli ECRC99 KEDOAH_07095 smpB SsrA-binding protein SmpB no data 56 97
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01087 SsrA-binding protein sig. 56 97
o Escherichia coli Nissle 1917 ECOLIN_RS14795 SsrA-binding protein SmpB no data 56 97
o Escherichia coli BW25113 b2620 smpB SsrA-binding protein (NCBI) strong 56 97
o Shewanella loihica PV-4 Shew_1268 smpB SsrA-binding protein (RefSeq) no data 58 93
o Pectobacterium carotovorum WPP14 HER17_RS17440 SsrA-binding protein SmpB cofit 55 97
o Alteromonas macleodii MIT1002 MIT1002_01806 Small protein B no data 54 95
o Enterobacter asburiae PDN3 EX28DRAFT_2723 SsrA-binding protein insig. 54 99
o Enterobacter sp. TBS_079 MPMX20_03490 SsrA-binding protein strong 54 99
o Variovorax sp. OAS795 ABID97_RS16435 SsrA-binding protein SmpB strong 51 99
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS00490 SsrA-binding protein SmpB no data 55 92
o Ralstonia solanacearum UW163 UW163_RS13820 SsrA-binding protein SmpB no data 55 92
o Rahnella sp. WP5 EX31_RS21740 SsrA-binding protein SmpB no data 58 90
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4352 tmRNA-binding protein SmpB no data 55 92
o Dickeya dadantii 3937 DDA3937_RS04305 SsrA-binding protein SmpB no data 55 97
o Cupriavidus basilensis FW507-4G11 RR42_RS11775 single-stranded DNA-binding protein no data 54 93
o Ralstonia solanacearum PSI07 RPSI07_RS17000 SsrA-binding protein SmpB no data 55 91
o Ralstonia solanacearum GMI1000 RS_RS07145 SsrA-binding protein no data 54 92
o Ralstonia sp. UNC404CL21Col ABZR87_RS11940 SsrA-binding protein SmpB strong 54 92
o Dickeya dianthicola ME23 DZA65_RS04215 SsrA-binding protein SmpB insig. 54 97
o Castellaniella sp019104865 MT123 ABCV34_RS04010 SsrA-binding protein SmpB no data 51 99
o Dickeya dianthicola 67-19 HGI48_RS04300 SsrA-binding protein SmpB insig. 54 96
o Acidovorax sp. GW101-3H11 Ac3H11_2861 tmRNA-binding protein SmpB no data 54 97
o Herbaspirillum seropedicae SmR1 HSERO_RS11000 single-stranded DNA-binding protein no data 54 90
o Klebsiella michiganensis M5al BWI76_RS21580 SsrA-binding protein insig. 52 99
o Erwinia tracheiphila SCR3 LU632_RS17025 smpB SsrA-binding protein SmpB no data 57 90
o Shewanella amazonensis SB2B Sama_2388 smpB SsrA-binding protein (RefSeq) no data 57 92
o Pantoea sp. MT58 IAI47_04790 SsrA-binding protein SmpB no data 52 97
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00630 SsrA-binding protein no data 52 92
o Paraburkholderia graminis OAS925 ABIE53_002482 SsrA-binding protein no data 54 91
o Dechlorosoma suillum PS Dsui_2675 SsrA-binding protein no data 53 91
o Burkholderia phytofirmans PsJN BPHYT_RS12040 single-stranded DNA-binding protein no data 53 91
o Rhodanobacter sp. FW510-T8 OKGIIK_07375 smpB SsrA-binding protein SmpB no data 52 92
o Rhodanobacter denitrificans MT42 LRK55_RS17780 SsrA-binding protein SmpB no data 51 97
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS17925 SsrA-binding protein SmpB no data 51 97
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS05700 SsrA-binding protein SmpB strong 51 91
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3437.1 tmRNA-binding protein SmpB no data 51 94
o Serratia liquefaciens MT49 IAI46_19655 SsrA-binding protein SmpB cofit 59 90
o Vibrio cholerae E7946 ATCC 55056 CSW01_04375 SsrA-binding protein sig. 51 97
o Shewanella oneidensis MR-1 SO1473 smpB SsrA-binding protein (NCBI ptt file) no data 54 88
o Lysobacter sp. OAE881 ABIE51_RS11680 SsrA-binding protein SmpB sig. 50 93
o Shewanella sp. ANA-3 Shewana3_2952 smpB SsrA-binding protein (RefSeq) no data 53 88
o Paraburkholderia sabiae LMG 24235 QEN71_RS06520 SsrA-binding protein SmpB no data 52 91
o Synechococcus elongatus PCC 7942 Synpcc7942_1795 smpB SsrA-binding protein no data 46 90
o Desulfovibrio vulgaris Hildenborough JW710 DVU0828 smpB SsrA-binding protein (TIGR) no data 48 92
o Desulfovibrio vulgaris Miyazaki F DvMF_2876 smpB SsrA-binding protein (RefSeq) no data 48 92
o Bifidobacterium breve UCC2003 BBR_RS13045 SsrA-binding protein no data 49 89
o Azospirillum brasilense Sp245 AZOBR_RS08425 single-stranded DNA-binding protein no data 42 91
o Azospirillum sp. SherDot2 MPMX19_01218 SsrA-binding protein no data 44 91
o Fusobacterium nucleatum SB010 HUW76_06090 SsrA-binding protein SmpB no data 42 93
o Caulobacter crescentus NA1000 CCNA_01254 SsrA-binding protein no data 45 89
o Caulobacter crescentus NA1000 Δfur CCNA_01254 SsrA-binding protein no data 45 89
o Phaeobacter inhibens DSM 17395 PGA1_c29450 SsrA-binding protein SmpB no data 43 97
o Mycobacterium tuberculosis H37Rv Rv3100c Probable SSRA-binding protein SmpB no data 43 92
o Sphingomonas koreensis DSMZ 15582 Ga0059261_0212 SsrA-binding protein no data 44 91
o Rhodospirillum rubrum S1H Rru_A1864 SmpB protein (NCBI) no data 41 93
o Rhizobium sp. OAE497 ABIE40_RS06035 SsrA-binding protein SmpB no data 43 91
o Agrobacterium fabrum C58 Atu1025 SSRA-binding protein no data 44 89
o Sinorhizobium meliloti 1021 SMc02405 SsrA-binding protein no data 43 92
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS05480 SsrA-binding protein SmpB no data 40 98
o Rhodopseudomonas palustris CGA009 TX73_013930 SsrA-binding protein SmpB no data 38 98
o Dinoroseobacter shibae DFL-12 Dshi_0147 SsrA-binding protein (RefSeq) no data 44 90
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2086 SsrA-binding protein no data 39 94
o Bosea sp. OAE506 ABIE41_RS19950 SsrA-binding protein SmpB no data 41 89
o Magnetospirillum magneticum AMB-1 AMB_RS12810 SsrA-binding protein no data 38 94
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_04675 SsrA-binding protein no data 38 86
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS14950 SsrA-binding protein insig. 38 88
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS16680 SsrA-binding protein no data 39 92
o Bacteroides ovatus ATCC 8483 BACOVA_01261 SsrA-binding protein no data 39 93
o Phocaeicola dorei CL03T12C01 ABI39_RS12595 SsrA-binding protein no data 39 92
o Bacteroides thetaiotaomicron VPI-5482 BT0179 SsrA-binding protein (NCBI ptt file) no data 38 93
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS10920 SsrA-binding protein strong 36 88