Homologs of HSERO_RS19535 from Herbaspirillum seropedicae SmR1

nucleotide-binding protein
SEED: Hypothetical ATP-binding protein UPF0042, contains P-loop
KEGG: UPF0042 nucleotide-binding protein

89 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Herbaspirillum seropedicae SmR1 HSERO_RS19535 nucleotide-binding protein strong 100 100
o Ralstonia solanacearum GMI1000 RS_RS01995 RNase adaptor protein RapZ strong 58 100
o Cupriavidus basilensis FW507-4G11 RR42_RS02060 nucleotide-binding protein strong 58 100
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS11145 RNase adapter RapZ strong 58 100
o Ralstonia solanacearum UW163 UW163_RS02435 RNase adapter RapZ strong 58 100
o Ralstonia solanacearum PSI07 RPSI07_RS22155 RNase adapter RapZ sig. 57 100
o Ralstonia sp. UNC404CL21Col ABZR87_RS07035 RNase adapter RapZ strong 56 100
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01931 UPF0042 nucleotide-binding protein sig. 58 100
o Paraburkholderia sabiae LMG 24235 QEN71_RS01735 RNase adapter RapZ sig. 58 100
o Burkholderia phytofirmans PsJN BPHYT_RS02885 glmZ(sRNA)-inactivating NTPase strong 58 100
o Paraburkholderia graminis OAS925 ABIE53_000714 UPF0042 nucleotide-binding protein strong 58 100
o Variovorax sp. OAS795 ABID97_RS23710 RNase adapter RapZ strong 53 99
o Variovorax sp. SCN45 GFF2356 RNase adapter protein RapZ cofit 53 99
o Acidovorax sp. GW101-3H11 Ac3H11_3459 Hypothetical ATP-binding protein UPF0042, contains P-loop strong 53 100
o Castellaniella sp019104865 MT123 ABCV34_RS14330 RNase adapter RapZ insig. 53 100
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF828 Hypothetical ATP-binding protein UPF0042, contains P-loop strong 51 100
o Dechlorosoma suillum PS Dsui_0990 putative P-loop-containing kinase insig. 53 100
o Vibrio cholerae E7946 ATCC 55056 CSW01_12830 RNase adaptor protein RapZ insig. 48 99
o Rhodanobacter sp. FW510-T8 OKGIIK_02250 rapZ RNase adapter RapZ strong 46 100
o Marinobacter adhaerens HP15 HP15_2445 protein yhbJ strong 44 100
o Serratia liquefaciens MT49 IAI46_22485 RNase adapter RapZ insig. 47 100
o Rahnella sp. WP5 EX31_RS12385 RNase adapter RapZ sig. 46 100
o Enterobacter asburiae PDN3 EX28DRAFT_3259 Predicted P-loop-containing kinase sig. 46 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3270 Hypothetical ATP-binding protein UPF0042, contains P-loop strong 45 100
o Pseudomonas fluorescens FW300-N2C3 AO356_07050 glmZ(sRNA)-inactivating NTPase strong 45 100
o Pectobacterium carotovorum WPP14 HER17_RS20075 RNase adapter RapZ strong 46 100
o Enterobacter sp. TBS_079 MPMX20_04111 RNase adapter protein RapZ strong 46 100
o Pseudomonas stutzeri RCH2 Psest_3316 Predicted P-loop-containing kinase strong 46 100
o Dickeya dadantii 3937 DDA3937_RS01515 RNase adapter RapZ strong 45 100
o Dickeya dianthicola 67-19 HGI48_RS01430 RNase adapter RapZ insig. 45 100
o Dickeya dianthicola ME23 DZA65_RS01495 RNase adapter RapZ sig. 45 100
o Escherichia coli BL21 ECD_03070 adaptor protein for GlmZ/GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase strong 46 100
o Escherichia fergusonii Becca EFB2_00618 RNase adapter protein RapZ strong 46 100
o Escherichia coli ECOR27 NOLOHH_09725 rapZ RNase adapter RapZ cofit 46 100
o Escherichia coli ECOR38 HEPCGN_16800 rapZ RNase adapter RapZ strong 46 100
o Escherichia coli ECRC100 OKFHMN_17925 rapZ RNase adapter RapZ strong 46 100
o Escherichia coli ECRC101 MCAODC_08445 rapZ RNase adapter RapZ cofit 46 100
o Escherichia coli ECRC102 NIAGMN_15685 rapZ RNase adapter RapZ strong 46 100
o Escherichia coli ECRC62 BNILDI_01810 rapZ RNase adapter RapZ cofit 46 100
o Escherichia coli ECRC98 JDDGAC_21550 rapZ RNase adapter RapZ strong 46 100
o Escherichia coli ECRC99 KEDOAH_10225 rapZ RNase adapter RapZ no data 46 100
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00495 RNase adapter protein RapZ sig. 46 100
o Escherichia coli Nissle 1917 ECOLIN_RS18440 RNase adapter RapZ strong 46 100
o Escherichia coli BW25113 b3205 yhbJ hypothetical protein (NCBI) strong 46 100
o Pseudomonas fluorescens SBW25 PFLU_RS04385 RNase adapter RapZ strong 45 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS04385 RNase adapter RapZ strong 45 100
o Pseudomonas putida KT2440 PP_0949 putative ATP-binding protein UPF0042 strong 44 100
o Pantoea sp. MT58 IAI47_17200 RNase adapter RapZ strong 45 100
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2949 Hypothetical ATP-binding protein UPF0042, contains P-loop cofit 46 100
o Acinetobacter radioresistens SK82 MPMX26_00547 RNase adapter protein RapZ strong 45 100
o Erwinia tracheiphila SCR3 LU632_RS21295 rapZ RNase adapter RapZ sig. 45 100
o Pseudomonas simiae WCS417 PS417_04330 glmZ(sRNA)-inactivating NTPase no data 45 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1083 Hypothetical ATP-binding protein UPF0042, contains P-loop no data 45 100
o Klebsiella michiganensis M5al BWI76_RS25280 RNase adaptor protein RapZ sig. 45 100
o Shewanella sp. ANA-3 Shewana3_0669 hypothetical protein (RefSeq) insig. 44 100
o Shewanella oneidensis MR-1 SO3964 conserved hypothetical protein (NCBI ptt file) strong 44 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_5017 Hypothetical ATP-binding protein UPF0042, contains P-loop strong 44 100
o Pseudomonas sp. RS175 PFR28_00170 RNase adapter protein RapZ strong 45 100
o Pseudomonas fluorescens FW300-N2E3 AO353_05195 glmZ(sRNA)-inactivating NTPase strong 44 100
o Pseudomonas sp. S08-1 OH686_08560 RNase adapter protein RapZ strong 44 100
o Shewanella amazonensis SB2B Sama_3091 hypothetical protein (RefSeq) strong 43 100
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS19800 RNase adapter RapZ strong 44 100
o Rhodanobacter denitrificans MT42 LRK55_RS12560 RNase adapter RapZ strong 43 100
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS12860 RNase adapter RapZ strong 43 100
o Pseudomonas syringae pv. syringae B728a Psyr_4150 Uncharacterized P-loop ATPase protein UPF0042 sig. 45 100
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4150 Uncharacterized P-loop ATPase protein UPF0042 sig. 45 100
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1658.1 hypothetical protein strong 44 99
o Lysobacter sp. OAE881 ABIE51_RS15975 RNase adapter RapZ strong 43 99
o Shewanella loihica PV-4 Shew_3314 hypothetical protein (RefSeq) no data 43 100
o Kangiella aquimarina DSM 16071 B158DRAFT_2077 Predicted P-loop-containing kinase strong 41 100
o Alteromonas macleodii MIT1002 MIT1002_00824 glmZ(sRNA)-inactivating NTPase insig. 42 100
  Azospirillum sp. SherDot2 MPMX19_02622 Nucleotide-binding protein insig. 42 96
o Rhodospirillum rubrum S1H Rru_A3448 Uncharacterized P-loop ATPase protein UPF0042 (NCBI) strong 41 99
o Azospirillum brasilense Sp245 AZOBR_RS30485 nucleotide-binding protein sig. 43 95
o Mycobacterium tuberculosis H37Rv Rv1421 Conserved protein strong 39 99
o Magnetospirillum magneticum AMB-1 AMB_RS22235 RNase adaptor protein RapZ cofit 40 100
o Bifidobacterium breve UCC2003 BBR_RS15525 RNase adapter RapZ strong 39 96
o Dinoroseobacter shibae DFL-12 Dshi_0209 hypothetical protein (RefSeq) insig. 39 99
o Fusobacterium nucleatum SB010 HUW76_06700 RNase adapter RapZ strong 32 99
o Desulfovibrio vulgaris Miyazaki F DvMF_0424 hypothetical protein (RefSeq) strong 36 99
o Phaeobacter inhibens DSM 17395 PGA1_c01180 Predicted P-loop-containing kinase insig. 38 99
o Sphingomonas koreensis DSMZ 15582 Ga0059261_0917 Predicted P-loop-containing kinase strong 38 96
o Desulfovibrio vulgaris Hildenborough JW710 DVU1631 conserved hypothetical protein (TIGR) strong 36 99
  Bacteroides thetaiotaomicron VPI-5482 BT1634 conserved hypothetical protein (NCBI ptt file) insig. 41 39
  Bacteroides ovatus ATCC 8483 BACOVA_04370 phosphotransferase enzyme family insig. 41 39
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS16695 phosphotransferase strong 41 39
  Bacteroides stercoris CC31F HMPREF1181_RS10545 phosphotransferase insig. 37 44
  Phocaeicola dorei CL03T12C01 ABI39_RS12610 phosphotransferase insig. 39 39
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS13370 RNase adapter RapZ insig. 36 39