Homologs of GFF1466 from Sphingobium sp. HT1-2

RNA polymerase sigma-54 factor RpoN
SEED: RNA polymerase sigma-54 factor RpoN
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Sphingobium sp. HT1-2 GFF1466 RNA polymerase sigma-54 factor RpoN insig. 100 100
o Sphingomonas koreensis DSMZ 15582 Ga0059261_1191 RNA polymerase sigma factor, sigma-70 family insig. 62 90
o Sinorhizobium meliloti 1021 SMa0143 RNA polymerase ECF sigma factor insig. 46 94
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS02635 RNA polymerase sigma factor insig. 50 92
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS09585 RNA polymerase sigma factor no data 50 85
o Rhodanobacter sp. FW510-T8 OKGIIK_06725 rpoE RNA polymerase subunit sigma-70 insig. 50 85
o Rhodanobacter denitrificans MT42 LRK55_RS00300 RNA polymerase sigma factor insig. 50 85
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS00565 RNA polymerase sigma factor insig. 52 74
o Alteromonas macleodii MIT1002 MIT1002_03872 RNA polymerase sigma factor SigM insig. 41 95
o Phaeobacter inhibens DSM 17395 PGA1_78p00070 'RNA polymerase sigma-70, ECF subfamily; ECF26 subgroup' no data 37 98
  Burkholderia phytofirmans PsJN BPHYT_RS24740 RNA polymerase subunit sigma-24 sig. 39 98
  Azospirillum brasilense Sp245 AZOBR_RS10625 RNA polymerase sigma-70 factor insig. 42 91
  Caulobacter crescentus NA1000 CCNA_02977 RNA polymerase ECF-type sigma factor sigU strong 38 97
  Caulobacter crescentus NA1000 Δfur CCNA_02977 RNA polymerase ECF-type sigma factor sigU cofit 38 97
  Paraburkholderia graminis OAS925 ABIE53_006215 RNA polymerase sigma-70 factor (ECF subfamily) insig. 38 98
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06547 RNA polymerase sigma-70 factor, ECF subfamily insig. 38 98
o Agrobacterium fabrum C58 Atu1485 ECF family sigma factor insig. 37 98
  Paraburkholderia graminis OAS925 ABIE53_002425 RNA polymerase sigma-70 factor (ECF subfamily) insig. 40 98
  Azospirillum sp. SherDot2 MPMX19_01371 hypothetical protein insig. 45 89
  Sphingobium sp. HT1-2 GFF5325 RNA polymerase ECF-type sigma factor cofit 41 93
  Paraburkholderia sabiae LMG 24235 QEN71_RS23005 sigma-70 family RNA polymerase sigma factor insig. 38 99
  Sphingobium sp. HT1-2 GFF2317 RNA polymerase ECF-type sigma factor cofit 40 99
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05124 RNA polymerase sigma-70 factor, ECF subfamily insig. 39 98
  Xanthobacter sp. DMC5 GFF2321 ECF RNA polymerase sigma factor EcfG no data 38 94
  Paraburkholderia sabiae LMG 24235 QEN71_RS00095 RNA polymerase sigma factor insig. 36 99
  Burkholderia phytofirmans PsJN BPHYT_RS08240 RNA polymerase subunit sigma-24 sig. 38 99
  Rhizobium sp. OAE497 ABIE40_RS14450 RNA polymerase sigma factor insig. 41 99
  Sinorhizobium meliloti 1021 SMc02713 RNA polymerase sigma-E factor (sigma-24) protein strong 37 98
  Sphingobium sp. HT1-2 GFF4975 RNA polymerase ECF-type sigma factor cofit 40 96
o Bacteroides ovatus ATCC 8483 BACOVA_02205 Sigma-70 region 2 sig. 35 99
  Sinorhizobium meliloti 1021 SMc01506 RNA polymerase sigma factor strong 38 96
  Sphingobium sp. HT1-2 GFF5151 RNA polymerase ECF-type sigma factor cofit 40 97
  Pseudomonas sp. DMC3 GFF1465 ECF RNA polymerase sigma factor EcfG insig. 39 96
  Agrobacterium fabrum C58 Atu4160 RNA polymerase sigma factor strong 40 98
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05041 RNA polymerase sigma-70 factor, ECF subfamily insig. 40 95
o Bacteroides thetaiotaomicron VPI-5482 BT2569 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 35 99
  Paraburkholderia graminis OAS925 ABIE53_003943 RNA polymerase sigma-70 factor (ECF subfamily) sig. 40 95
  Bacteroides thetaiotaomicron VPI-5482 BT3457 RNA polymerase ECF-type sigma factor (NCBI ptt file) strong 35 99
  Azospirillum sp. SherDot2 MPMX19_01197 ECF RNA polymerase sigma factor EcfG insig. 34 98
  Cupriavidus basilensis FW507-4G11 RR42_RS32410 RNA polymerase subunit sigma-24 no data 39 98
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3492 RNA polymerase sigma factor, sigma-70 family strong 38 99
  Mycobacterium tuberculosis H37Rv Rv3223c Alternative RNA polymerase sigma-E factor (sigma-24) SigH (RPOE) insig. 35 99
  Rhodopseudomonas palustris CGA009 TX73_021900 sigma-70 family RNA polymerase sigma factor strong 39 97
  Agrobacterium fabrum C58 Atu2030 ECF family sigma factor insig. 42 98
  Azospirillum sp. SherDot2 MPMX19_00764 ECF RNA polymerase sigma factor EcfG insig. 38 94
  Caulobacter crescentus NA1000 CCNA_03589 RNA polymerase EcfG family sigma factor sigT strong 37 99
  Caulobacter crescentus NA1000 Δfur CCNA_03589 RNA polymerase EcfG family sigma factor sigT cofit 37 99
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_19215 RNA polymerase subunit sigma sig. 35 99
  Bacteroides ovatus ATCC 8483 BACOVA_01848 Sigma-70 region 2 strong 34 99
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3977 RNA polymerase sigma-54 factor RpoN insig. 40 91
  Azospirillum sp. SherDot2 MPMX19_05043 hypothetical protein insig. 39 86
  Bosea sp. OAE506 ABIE41_RS04095 sigma-70 family RNA polymerase sigma factor strong 38 96
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3853 RNA polymerase sigma factor, sigma-70 family insig. 37 98
  Azospirillum brasilense Sp245 AZOBR_RS14755 RNA polymerase sigma-70 factor insig. 32 98
  Paraburkholderia graminis OAS925 ABIE53_003919 RNA polymerase sigma-70 factor (ECF subfamily) insig. 38 91
  Azospirillum brasilense Sp245 AZOBR_RS06360 RNA polymerase subunit sigma-24 no data 36 94
  Magnetospirillum magneticum AMB-1 AMB_RS13315 hypothetical protein insig. 39 99
  Pseudomonas sp. SVBP6 COO64_RS10855 sigma-70 family RNA polymerase sigma factor insig. 43 91
  Rhizobium sp. OAE497 ABIE40_RS11455 RNA polymerase sigma factor insig. 39 96
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2582 RNA polymerase sigma-54 factor RpoN insig. 41 91
  Rhizobium sp. OAE497 ABIE40_RS03400 RNA polymerase sigma factor insig. 40 82
  Rhizobium sp. OAE497 ABIE40_RS20320 sigma-70 family RNA polymerase sigma factor insig. 39 94
  Pseudomonas fluorescens FW300-N2E3 AO353_20305 RNA polymerase subunit sigma-24 no data 39 91
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS14775 sigma-70 family RNA polymerase sigma factor strong 37 94
o Bacteroides stercoris CC31F HMPREF1181_RS16950 RNA polymerase sigma factor strong 34 98
  Rhizobium sp. OAE497 ABIE40_RS13310 RNA polymerase sigma factor insig. 37 93
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2200 RNA polymerase sigma-54 factor RpoN sig. 36 96
  Pectobacterium carotovorum WPP14 HER17_RS09715 sigma-70 family RNA polymerase sigma factor cofit 35 93
  Enterobacter asburiae PDN3 EX28DRAFT_2729 RNA polymerase sigma factor, sigma-70 family insig. 37 93
  Rhizobium sp. OAE497 ABIE40_RS21790 sigma-70 family RNA polymerase sigma factor cofit 36 99
  Rhodospirillum rubrum S1H Rru_A3287 Sigma-24 (FecI) (NCBI) no data 36 99
  Sinorhizobium meliloti 1021 SM_b21484 RNA polymerase sigma-E factor (sigma-24) protein insig. 35 94
o Phocaeicola dorei CL03T12C01 ABI39_RS07815 RNA polymerase sigma factor strong 34 95
  Herbaspirillum seropedicae SmR1 HSERO_RS13530 RNA polymerase subunit sigma-24 no data 44 90
  Pseudomonas fluorescens SBW25 PFLU_RS19010 sigma-70 family RNA polymerase sigma factor insig. 39 91
  Pseudomonas fluorescens SBW25-INTG PFLU_RS19010 sigma-70 family RNA polymerase sigma factor sig. 39 91
  Sphingobium sp. HT1-2 GFF2028 hypothetical protein cofit 38 90
  Rhizobium sp. OAE497 ABIE40_RS27415 sigma-70 family RNA polymerase sigma factor insig. 33 98
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS12805 RNA polymerase sigma factor strong 33 95
  Pseudomonas orientalis W4I3 QF045_RS18740 sigma-70 family RNA polymerase sigma factor insig. 39 91
  Phocaeicola dorei CL03T12C01 ABI39_RS17450 RNA polymerase sigma factor strong 33 95
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS03770 RNA polymerase sigma factor strong 33 95
  Pseudomonas fluorescens FW300-N2C3 AO356_01625 RNA polymerase subunit sigma-24 insig. 35 96
  Sinorhizobium meliloti 1021 SMc01419 RNA polymerase sigma factor protein sig. 34 95
  Bacteroides stercoris CC31F HMPREF1181_RS02840 RNA polymerase sigma factor sig. 32 95
  Azospirillum brasilense Sp245 AZOBR_RS23735 RNA polymerase no data 38 87
o Serratia liquefaciens MT49 IAI46_22980 RNA polymerase sigma factor insig. 38 83
  Dinoroseobacter shibae DFL-12 Dshi_3835 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) insig. 35 94
  Bacteroides thetaiotaomicron VPI-5482 BT1197 RNA polymerase ECF-type sigma factor (NCBI ptt file) strong 33 95
  Pseudomonas lactucae CFBP13502 GEMAOFIL_03722 ECF RNA polymerase sigma factor EcfG no data 39 91
  Pantoea sp. MT58 IAI47_21640 sigma-70 family RNA polymerase sigma factor insig. 37 83
  Variovorax sp. OAS795 ABID97_RS16445 sigma-70 family RNA polymerase sigma factor no data 37 94
  Dickeya dadantii 3937 DDA3937_RS11055 sigma-70 family RNA polymerase sigma factor insig. 36 93
  Dickeya dianthicola 67-19 HGI48_RS11075 sigma-70 family RNA polymerase sigma factor insig. 36 93
  Azospirillum brasilense Sp245 AZOBR_RS11020 RNA polymerase subunit sigma-70 no data 37 88
  Mycobacterium tuberculosis H37Rv Rv1221 Alternative RNA polymerase sigma factor SigE insig. 38 90
  Pseudomonas putida KT2440 PP_2888 putative ECF sigma factor PrtI no data 40 91
  Pseudomonas sp. BP01 JOY50_RS05860 sigma-70 family RNA polymerase sigma factor no data 40 91
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS12225 RNA polymerase sigma factor cofit 36 83
  Bacteroides ovatus ATCC 8483 BACOVA_03979 Sigma-70 region 2 strong 33 95