| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_04555 | | tRNA pseudouridine(65) synthase TruC | insig. | 100 | 100 |
| o | Pantoea sp. MT58 | IAI47_04065 | | tRNA pseudouridine(65) synthase TruC | insig. | 65 | 98 |
| o | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS16905 | | tRNA pseudouridine(65) synthase TruC | cofit | 65 | 98 |
| o | Klebsiella michiganensis M5al | BWI76_RS22850 | | tRNA pseudouridine synthase TruC | insig. | 65 | 100 |
| o | Serratia liquefaciens MT49 | IAI46_20290 | | tRNA pseudouridine(65) synthase TruC | insig. | 64 | 98 |
| o | Escherichia coli ECOR27 | NOLOHH_12090 | truC | tRNA pseudouridine(65) synthase TruC | insig. | 65 | 100 |
| o | Escherichia coli ECRC62 | BNILDI_10595 | truC | tRNA pseudouridine(65) synthase TruC | insig. | 65 | 100 |
| o | Enterobacter asburiae PDN3 | EX28DRAFT_2872 | | Pseudouridylate synthases, 23S RNA-specific | no data | 67 | 96 |
| o | Escherichia coli BL21 | ECD_02636 | | tRNA(Ile1,Asp) pseudouridine(65) synthase | insig. | 65 | 100 |
| o | Escherichia coli ECRC100 | OKFHMN_20210 | truC | tRNA pseudouridine(65) synthase TruC | insig. | 65 | 100 |
| o | Escherichia coli ECRC101 | MCAODC_10735 | truC | tRNA pseudouridine(65) synthase TruC | insig. | 65 | 100 |
| o | Escherichia coli ECRC102 | NIAGMN_17980 | truC | tRNA pseudouridine(65) synthase TruC | insig. | 65 | 100 |
| o | Escherichia coli ECRC98 | JDDGAC_23875 | truC | tRNA pseudouridine(65) synthase TruC | insig. | 65 | 100 |
| o | Escherichia coli ECRC99 | KEDOAH_07920 | truC | tRNA pseudouridine(65) synthase TruC | no data | 65 | 100 |
| o | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_00940 | | tRNA pseudouridine synthase C | insig. | 65 | 100 |
| o | Escherichia coli Nissle 1917 | ECOLIN_RS15550 | | tRNA pseudouridine(65) synthase TruC | insig. | 65 | 100 |
| o | Escherichia coli BW25113 | b2791 | yqcB | tRNA pseudouridine synthase (NCBI) | insig. | 65 | 100 |
| o | Erwinia amylovora T8 | OLJFJH_09220 | | tRNA pseudouridine(65) synthase TruC | insig. | 63 | 98 |
| o | Klebsiella pneumoniae MKP103 | KDGMDA_03375 | | tRNA pseudouridine(65) synthase TruC | sig. | 64 | 100 |
| o | Klebsiella pneumoniae MRSN742743 | KFA93_RS18385 | truC;go_function=pseudouridine | tRNA pseudouridine(65) synthase TruC | insig. | 64 | 100 |
| o | Escherichia fergusonii Becca | EFB2_01126 | | tRNA pseudouridine synthase C | insig. | 65 | 100 |
| o | Escherichia coli ECOR38 | HEPCGN_19465 | truC | tRNA pseudouridine(65) synthase TruC | insig. | 65 | 100 |
| o | Dickeya dadantii 3937 | DDA3937_RS05085 | | tRNA pseudouridine(65) synthase TruC | insig. | 65 | 98 |
| o | Dickeya dianthicola 67-19 | HGI48_RS05085 | | tRNA pseudouridine(65) synthase TruC | insig. | 64 | 98 |
| o | Dickeya dianthicola ME23 | DZA65_RS05425 | | tRNA pseudouridine(65) synthase TruC | insig. | 64 | 98 |
| o | Enterobacter sp. TBS_079 | MPMX20_03661 | | tRNA pseudouridine synthase C | insig. | 65 | 96 |
| o | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF4846 | | tRNA pseudouridine synthase C (EC 4.2.1.70) | strong | 64 | 100 |
| o | Rahnella sp. WP5 | EX31_RS13065 | | tRNA pseudouridine(65) synthase TruC | insig. | 63 | 97 |
| o | Pectobacterium carotovorum WPP14 | HER17_RS16365 | | tRNA pseudouridine(65) synthase TruC | insig. | 62 | 97 |
| o | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_17320 | truC | tRNA pseudouridine(65) synthase TruC | cofit | 61 | 98 |
| o | Erwinia tracheiphila SCR3 | LU632_RS06295 | truC | tRNA pseudouridine(65) synthase TruC | insig. | 61 | 98 |
| o | Shewanella sp. ANA-3 | Shewana3_2824 | | tRNA pseudouridine synthase C (RefSeq) | insig. | 58 | 99 |
| o | Shewanella amazonensis SB2B | Sama_1131 | | pseudouridylate synthase (RefSeq) | insig. | 57 | 98 |
| o | Shewanella loihica PV-4 | Shew_2643 | | pseudouridylate synthase (RefSeq) | insig. | 52 | 98 |
| o | Alteromonas macleodii MIT1002 | MIT1002_00998 | | tRNA pseudouridine synthase C | insig. | 52 | 91 |
| o | Dechlorosoma suillum PS | Dsui_3127 | | 23S RNA-specific pseudouridylate synthase | insig. | 50 | 98 |
| o | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_06180 | | pseudouridylate synthase | insig. | 47 | 100 |
| o | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS18680 | | pseudouridine synthase | no data | 47 | 97 |
| o | Marinobacter adhaerens HP15 | HP15_1021 | | tRNA pseudouridine synthase C | insig. | 49 | 95 |
| o | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS09310 | | pseudouridylate synthase | insig. | 45 | 95 |
| o | Rhodanobacter sp. FW510-T8 | OKGIIK_13270 | | pseudouridylate synthase | insig. | 45 | 97 |
| o | Rhodanobacter denitrificans MT42 | LRK55_RS10270 | | pseudouridine synthase | insig. | 43 | 97 |
| o | Rhodanobacter sp000427505 FW510-R12 | LRK53_RS03400 | | pseudouridine synthase | insig. | 44 | 98 |
| o | Acidovorax sp. GW101-3H11 | Ac3H11_3112 | | tRNA pseudouridine synthase C (EC 4.2.1.70) | insig. | 46 | 98 |
| o | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS10630 | | pseudouridine synthase | insig. | 43 | 97 |
| o | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS13460 | | pseudouridine synthase | insig. | 43 | 97 |
| o | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_3374 | | Pseudouridylate synthases, 23S RNA-specific | insig. | 44 | 97 |
| o | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.296.1 | | tRNA pseudouridine synthase C (EC 4.2.1.70) | insig. | 43 | 96 |
| o | Lysobacter sp. OAE881 | ABIE51_RS00215 | | pseudouridine synthase | insig. | 40 | 95 |
| | Pseudomonas sp. S08-1 | OH686_22095 | | LSU rRNA pseudouridine(955/2504/2580) synthase | cofit | 34 | 95 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF121 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | cofit | 34 | 90 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS02100 | rluC;go_function=RNA | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | sig. | 35 | 92 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_15135 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | strong | 35 | 92 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS33485 | rluC;go_function=RNA | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | strong | 35 | 92 |
| | Shewanella amazonensis SB2B | Sama_2197 | | pseudouridylate synthase (RefSeq) | insig. | 35 | 89 |
| | Rahnella sp. WP5 | EX31_RS03750 | | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | insig. | 35 | 91 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS15230 | | RNA pseudouridine synthase | sig. | 29 | 93 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_14535 | | RluA family pseudouridine synthase | insig. | 34 | 91 |
| | Shewanella loihica PV-4 | Shew_1594 | | RluA family pseudouridine synthase (RefSeq) | sig. | 32 | 95 |
| | Shewanella loihica PV-4 | Shew_0783 | | pseudouridylate synthase (RefSeq) | no data | 34 | 89 |
| | Pseudomonas stutzeri RCH2 | Psest_1680 | | pseudouridine synthase, RluA family | no data | 33 | 95 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_20600 | | RNA pseudouridine synthase | sig. | 30 | 91 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS17255 | | RNA pseudouridine synthase | insig. | 30 | 98 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS10965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | strong | 30 | 92 |
| | Sphingobium sp. HT1-2 | GFF4062 | | LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) | cofit | 33 | 95 |
| | Dechlorosoma suillum PS | Dsui_2437 | | pseudouridine synthase, RluA family | strong | 34 | 91 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS17840 | | RluA family pseudouridine synthase | insig. | 30 | 93 |
| | Pseudomonas putida KT2440 | PP_1906 | | ribosomal large subunit pseudouridine synthase C | strong | 34 | 92 |
| | Variovorax sp. SCN45 | GFF3847 | | LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) | insig. | 34 | 90 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.1362.1 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | sig. | 31 | 95 |
| | Shewanella sp. ANA-3 | Shewana3_1430 | | pseudouridine synthase (RefSeq) | sig. | 35 | 87 |
| | Pseudomonas sp. BP01 | JOY50_RS16830 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | insig. | 34 | 92 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_0583 | | Pseudouridylate synthases, 23S RNA-specific | strong | 32 | 94 |
| | Shewanella amazonensis SB2B | Sama_1988 | | pseudouridylate synthase (RefSeq) | strong | 32 | 91 |
| | Cellulophaga baltica 18 | M666_RS18455 | | RluA family pseudouridine synthase | insig. | 26 | 94 |
| | Pseudomonas sp. RS175 | PFR28_03018 | | Ribosomal large subunit pseudouridine synthase C | sig. | 33 | 92 |
| | Pseudomonas sp. SVBP6 | COO64_RS05845 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | insig. | 33 | 92 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | cofit | 32 | 92 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | strong | 32 | 92 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_04440 | | Ribosomal large subunit pseudouridine synthase C | cofit | 32 | 92 |
| | Rhodanobacter sp000427505 FW510-R12 | LRK53_RS05045 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | insig. | 29 | 90 |
| | Pseudomonas simiae WCS417 | PS417_21480 | | 23S rRNA pseudouridylate synthase | strong | 32 | 92 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_1590 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | strong | 34 | 86 |
| | Pseudomonas segetis P6 | ACVTMO_RS10270 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | cofit | 33 | 92 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_10130 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | insig. | 32 | 91 |
| | Rhodanobacter sp. FW510-T8 | OKGIIK_01790 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | strong | 29 | 90 |
| | Shewanella sp. ANA-3 | Shewana3_0799 | | ribosomal large subunit pseudouridine synthase A (RefSeq) | insig. | 33 | 91 |
| | Pseudomonas orientalis W4I3 | QF045_RS23560 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | insig. | 32 | 92 |
| | Variovorax sp. OAS795 | ABID97_RS08250 | | RluA family pseudouridine synthase | strong | 34 | 90 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | sig. | 33 | 92 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | insig. | 33 | 92 |
| | Lysobacter sp. OAE881 | ABIE51_RS04885 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | cofit | 31 | 92 |
| | Bacteroides stercoris CC31F | HMPREF1181_RS13725 | | RNA pseudouridine synthase | insig. | 35 | 91 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_0642 | | pseudouridine synthase, RluA family | strong | 32 | 94 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS02130 | | RNA pseudouridine synthase | insig. | 30 | 94 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT3772 | | ribosomal large subunit pseudouridine synthase D (NCBI ptt file) | strong | 30 | 94 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS04745 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | strong | 28 | 90 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS04965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | strong | 28 | 90 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS02790 | | RNA pseudouridine synthase | sig. | 30 | 93 |
| | Bacteroides stercoris CC31F | HMPREF1181_RS00225 | | RNA pseudouridine synthase | insig. | 29 | 94 |