Homologs of CA264_15820 from Pontibacter actiniarum KMM 6156, DSM 19842

transcription-repair coupling factor
SEED: Transcription-repair coupling factor
KEGG: transcription-repair coupling factor (superfamily II helicase)

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_15820 transcription-repair coupling factor sig. 100 100
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1312 transcription-repair coupling factor (mfd) insig. 62 99
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS21070 transcription-repair coupling factor insig. 56 99
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS21080 transcription-repair coupling factor sig. 56 99
o Cellulophaga baltica 18 M666_RS06740 transcription-repair coupling factor insig. 53 99
o Bacteroides ovatus ATCC 8483 BACOVA_00401 transcription-repair coupling factor sig. 48 99
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS02110 transcription-repair coupling factor cofit 48 99
o Phocaeicola dorei CL03T12C01 ABI39_RS11420 transcription-repair coupling factor sig. 49 99
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS15450 transcription-repair coupling factor sig. 49 99
o Bacteroides stercoris CC31F HMPREF1181_RS04640 transcription-repair coupling factor sig. 49 99
o Bacteroides thetaiotaomicron VPI-5482 BT0252 transcription-repair coupling factor (NCBI ptt file) sig. 48 100
o Synechocystis sp000284455 PCC 6803 SGL_RS14485 transcription-repair coupling factor strong 37 91
o Lysobacter sp. OAE881 ABIE51_RS14320 transcription-repair coupling factor insig. 36 88
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS02040 transcription-repair coupling factor strong 35 95
o Rhodanobacter denitrificans MT42 LRK55_RS01815 transcription-repair coupling factor strong 36 95
o Pseudomonas sp. S08-1 OH686_21990 transcription-repair coupling factor cofit 37 88
o Shewanella loihica PV-4 Shew_1630 transcription-repair coupling factor (RefSeq) strong 36 94
o Shewanella amazonensis SB2B Sama_1330 transcription-repair coupling factor (RefSeq) strong 36 90
o Pseudomonas syringae pv. syringae B728a Psyr_1896 transcription-repair coupling factor insig. 37 88
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1896 transcription-repair coupling factor insig. 37 88
o Synechococcus elongatus PCC 7942 Synpcc7942_1326 mfd transcription-repair coupling factor strong 34 91
o Marinobacter adhaerens HP15 HP15_2257 transcription-repair-coupling factor strong 37 87
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1775.1 Transcription-repair coupling factor insig. 37 89
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS21210 transcription-repair coupling factor strong 34 96
o Ralstonia sp. UNC404CL21Col ABZR87_RS13240 transcription-repair coupling factor sig. 35 93
o Vibrio cholerae E7946 ATCC 55056 CSW01_09445 transcription-repair coupling factor insig. 34 94
o Kangiella aquimarina DSM 16071 B158DRAFT_1800 transcription-repair coupling factor strong 35 94
o Acinetobacter baumannii LAC-4 RR41_RS12305 transcription-repair coupling factor insig. 34 90
o Rhodopseudomonas palustris CGA009 TX73_013805 transcription-repair coupling factor insig. 35 90
o Methylophilus sp. DMC18 GFF356 Transcription-repair-coupling factor cofit 36 91
o Pseudomonas sp. RS175 PFR28_01123 Transcription-repair-coupling factor sig. 37 88
o Magnetospirillum magneticum AMB-1 AMB_RS12390 transcription-repair coupling factor insig. 35 91
o Pseudomonas fluorescens FW300-N2C3 AO356_02270 transcription-repair coupling factor strong 36 88
o Bosea sp. OAE506 ABIE41_RS15825 transcription-repair coupling factor cofit 35 88
o Sinorhizobium meliloti 1021 SMc04450 transcription-repair coupling factor sig. 36 88
o Pseudomonas stutzeri RCH2 Psest_1653 transcription-repair coupling factor (mfd) strong 35 88
o Cupriavidus basilensis FW507-4G11 RR42_RS07845 transcription-repair coupling factor strong 35 88
  Escherichia coli BW25113 b1114 mfd transcription-repair coupling factor (NCBI) strong 44 61
  Escherichia fergusonii Becca EFB2_02861 Transcription-repair-coupling factor insig. 44 61
  Escherichia coli ECOR38 HEPCGN_24015 mfd transcription-repair coupling factor strong 44 61
  Escherichia coli ECOR27 NOLOHH_20995 mfd transcription-repair coupling factor insig. 44 61
  Escherichia coli ECRC62 BNILDI_19160 mfd transcription-repair coupling factor cofit 44 61
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02552 Transcription-repair-coupling factor cofit 44 61
  Escherichia coli BL21 ECD_01110 transcription-repair coupling factor sig. 44 61
  Escherichia coli ECRC100 OKFHMN_03470 mfd transcription-repair coupling factor strong 44 61
  Escherichia coli ECRC101 MCAODC_22830 mfd transcription-repair coupling factor strong 44 61
  Escherichia coli ECRC102 NIAGMN_24360 mfd transcription-repair coupling factor strong 44 61
  Escherichia coli ECRC98 JDDGAC_07130 mfd transcription-repair coupling factor strong 44 61
  Escherichia coli ECRC99 KEDOAH_24285 mfd transcription-repair coupling factor no data 44 61
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS08005 transcription-repair coupling factor insig. 42 66
o Agrobacterium fabrum C58 Atu1778 transcription-repair coupling factor sig. 34 88
  Rhodanobacter sp. FW510-T8 OKGIIK_09105 mfd transcription-repair coupling factor cofit 42 65
  Rahnella sp. WP5 EX31_RS24520 transcription-repair coupling factor insig. 44 58
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3397 Transcription-repair coupling factor strong 44 61
  Klebsiella michiganensis M5al BWI76_RS11205 transcription-repair coupling factor strong 43 62
  Enterobacter sp. TBS_079 MPMX20_01795 Transcription-repair-coupling factor strong 44 59
  Pectobacterium carotovorum WPP14 HER17_RS08775 transcription-repair coupling factor insig. 44 58
  Klebsiella pneumoniae MKP103 KDGMDA_18800 transcription-repair coupling factor sig. 44 62
  Pantoea sp. MT58 IAI47_11975 transcription-repair coupling factor insig. 42 64
  Enterobacter asburiae PDN3 EX28DRAFT_1816 transcription-repair coupling factor (mfd) cofit 44 58
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_00560 mfd transcription-repair coupling factor strong 45 58
  Serratia liquefaciens MT49 IAI46_10320 transcription-repair coupling factor insig. 44 58
  Erwinia tracheiphila SCR3 LU632_RS14730 mfd transcription-repair coupling factor sig. 45 58
  Shewanella oneidensis MR-1 SO2255 mfd transcription-repair coupling factor (NCBI ptt file) strong 46 55
  Shewanella sp. ANA-3 Shewana3_2289 transcription-repair coupling factor (RefSeq) sig. 46 55
  Dickeya dadantii 3937 DDA3937_RS13000 transcription-repair coupling factor cofit 44 58
o Alteromonas macleodii MIT1002 MIT1002_01646 Transcription-repair-coupling factor cofit 46 55
o Pseudomonas fluorescens SBW25 PFLU_RS07710 transcription-repair coupling factor cofit 47 55
o Pseudomonas fluorescens SBW25-INTG PFLU_RS07710 transcription-repair coupling factor sig. 47 55
o Pseudomonas simiae WCS417 PS417_07635 transcription-repair coupling factor strong 47 55
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS19410 transcription-repair coupling factor cofit 42 64
o Bifidobacterium breve UCC2003 BBR_RS14115 transcription-repair coupling factor strong 37 84
  Erwinia amylovora T8 OLJFJH_15445 transcription-repair coupling factor strong 45 58
o Pseudomonas lactucae CFBP13502 GEMAOFIL_01659 Transcription-repair-coupling factor cofit 46 55
  Dickeya dianthicola 67-19 HGI48_RS13065 transcription-repair coupling factor cofit 44 58
o Pseudomonas sp. BP01 JOY50_RS25100 mfd transcription-repair coupling factor insig. 45 56
  Dickeya dianthicola ME23 DZA65_RS13530 transcription-repair coupling factor cofit 44 58
  Pseudomonas sp. DMC3 GFF1285 Transcription-repair-coupling factor cofit 45 58
  Pseudomonas putida KT2440 PP_2148 transcription-repair coupling factor strong 45 56
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3916 Transcription-repair coupling factor strong 46 55
o Pseudomonas aeruginosa PA14 IKLFDK_15275 transcription-repair coupling factor insig. 44 58
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4027 Transcription-repair coupling factor strong 46 55
o Dechlorosoma suillum PS Dsui_2385 transcription-repair coupling factor Mfd strong 35 92
  Pseudomonas sp. SVBP6 COO64_RS09460 mfd transcription-repair coupling factor insig. 44 58
  Pseudomonas fluorescens FW300-N2E3 AO353_00435 transcription-repair coupling factor strong 44 58
  Acinetobacter radioresistens SK82 MPMX26_01319 Transcription-repair-coupling factor insig. 42 62
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2278 Transcription-repair coupling factor strong 44 58
  Paraburkholderia sabiae LMG 24235 QEN71_RS22060 transcription-repair coupling factor insig. 42 63
  Paraburkholderia graminis OAS925 ABIE53_002095 transcription-repair coupling factor (superfamily II helicase) strong 41 66
  Burkholderia phytofirmans PsJN BPHYT_RS09290 helicase sig. 41 66
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00880 transcription-repair coupling factor sig. 41 66
  Desulfovibrio vulgaris Hildenborough JW710 DVU1903 mfd transcription-repair coupling factor (TIGR) sig. 43 58
  Ralstonia solanacearum GMI1000 RS_RS08275 transcription-repair coupling factor sig. 43 60
  Caulobacter crescentus NA1000 CCNA_01920 transcription-repair coupling factor Mfd strong 41 64
  Caulobacter crescentus NA1000 Δfur CCNA_01920 transcription-repair coupling factor Mfd cofit 41 64
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS01445 transcription-repair coupling factor sig. 43 60
  Ralstonia solanacearum UW163 UW163_RS14755 transcription-repair coupling factor insig. 43 60
  Mycobacterium tuberculosis H37Rv Rv1020 Probable transcription-repair coupling factor Mfd (TRCF) sig. 43 59
  Ralstonia solanacearum PSI07 RPSI07_RS16040 transcription-repair coupling factor sig. 42 62
  Desulfovibrio vulgaris Miyazaki F DvMF_0285 transcription-repair coupling factor (RefSeq) sig. 47 53