Homologs of ABZR87_RS10885 from Ralstonia sp. UNC404CL21Col

23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
SEED: 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-)
KEGG: RNA methyltransferase, TrmA family

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Ralstonia sp. UNC404CL21Col ABZR87_RS10885 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 100 100
o Ralstonia solanacearum PSI07 RPSI07_RS18130 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 94 100
o Ralstonia solanacearum GMI1000 RS_RS06055 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD sig. 93 100
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS15245 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 93 100
o Ralstonia solanacearum UW163 UW163_RS12710 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 93 100
o Cupriavidus basilensis FW507-4G11 RR42_RS13170 23S rRNA methyltransferase insig. 80 98
o Paraburkholderia sabiae LMG 24235 QEN71_RS22225 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 79 97
o Burkholderia phytofirmans PsJN BPHYT_RS09125 23S rRNA methyltransferase insig. 73 99
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00846 23S rRNA m(5)U-1939 methyltransferase insig. 73 99
o Herbaspirillum seropedicae SmR1 HSERO_RS14825 23S rRNA methyltransferase insig. 67 98
o Acidovorax sp. GW101-3H11 Ac3H11_2847 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) insig. 59 99
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3883 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) insig. 61 99
o Dechlorosoma suillum PS Dsui_1981 23S rRNA (uracil-5-)-methyltransferase RumA cofit 59 100
o Variovorax sp. SCN45 GFF2841 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) cofit 56 98
o Methylophilus sp. DMC18 GFF916 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 55 98
o Castellaniella sp019104865 MT123 ABCV34_RS03050 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 58 99
  Paraburkholderia graminis OAS925 ABIE53_002060 tRNA/tmRNA/rRNA uracil-C5-methylase (TrmA/RlmC/RlmD family) sig. 74 68
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS07120 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 46 98
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3669.1 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) insig. 44 98
o Marinobacter adhaerens HP15 HP15_790 23S rRNA 5-methyluridine methyltransferase insig. 43 98
o Rhodanobacter denitrificans MT42 LRK55_RS16715 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 44 98
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS11940 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 44 98
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS17000 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD sig. 43 98
o Rhodanobacter sp. FW510-T8 OKGIIK_07840 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 44 98
o Kangiella aquimarina DSM 16071 B158DRAFT_2275 23S rRNA (uracil-5-)-methyltransferase RumA insig. 43 98
o Lysobacter sp. OAE881 ABIE51_RS13830 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 42 98
o Acinetobacter radioresistens SK82 MPMX26_00538 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 41 97
o Acinetobacter baumannii LAC-4 RR41_RS16085 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 39 98
o Pectobacterium carotovorum WPP14 HER17_RS04110 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 40 98
o Rahnella sp. WP5 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 38 97
o Escherichia coli BL21 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent insig. 38 98
o Enterobacter asburiae PDN3 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA insig. 37 98
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 38 98
o Escherichia coli BW25113 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) insig. 38 98
o Pseudomonas sp. DMC3 GFF4819 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 38 98
o Escherichia coli ECOR27 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 37 98
o Dickeya dadantii 3937 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 39 93
o Escherichia coli ECRC62 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 37 98
o Escherichia coli Nissle 1917 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 37 98
o Escherichia coli ECOR38 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 37 98
o Serratia liquefaciens MT49 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 38 93
o Shewanella loihica PV-4 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) cofit 36 93
o Pseudomonas segetis P6 MPMX49_01653 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 40 96
o Pseudomonas stutzeri RCH2 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA insig. 38 98
o Escherichia fergusonii Becca EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 37 98
o Escherichia coli ECRC100 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 37 98
o Escherichia coli ECRC101 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 37 98
o Escherichia coli ECRC102 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 37 98
o Escherichia coli ECRC98 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 37 98
o Escherichia coli ECRC99 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD no data 37 98
o Vibrio cholerae E7946 ATCC 55056 CSW01_12410 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 36 98
o Erwinia amylovora T8 OLJFJH_09240 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 39 93
o Shewanella amazonensis SB2B Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) sig. 38 93
o Dickeya dianthicola ME23 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 37 97
o Klebsiella pneumoniae MKP103 KDGMDA_03340 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 37 98
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_17370 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 36 98
o Erwinia tracheiphila SCR3 LU632_RS06345 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 36 98
o Enterobacter sp. TBS_079 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 36 98
o Pseudomonas sp. SVBP6 COO64_RS07330 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 39 98
o Pseudomonas putida KT2440 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD strong 39 98
o Pseudomonas sp. S08-1 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA cofit 38 98
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) insig. 37 98
o Pseudomonas aeruginosa PA14 IKLFDK_04195 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 37 98
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS16855 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 37 98
o Pantoea sp. MT58 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 36 98
o Klebsiella michiganensis M5al BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase sig. 38 94
o Dickeya dianthicola 67-19 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 38 93
o Pseudomonas sp. BP01 JOY50_RS23905 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 39 98
o Pseudomonas lactucae CFBP13502 GEMAOFIL_04224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 39 98
o Pseudomonas fluorescens SBW25 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD strong 38 98
o Pseudomonas fluorescens SBW25-INTG PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD sig. 38 98
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 strong 38 98
o Shewanella sp. ANA-3 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) cofit 36 93
o Shewanella oneidensis MR-1 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) strong 36 93
o Pseudomonas sp. RS175 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD strong 38 98
o Pseudomonas simiae WCS417 PS417_20155 23S rRNA methyltransferase insig. 39 96
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 strong 37 98
o Pseudomonas syringae pv. syringae B728a Psyr_3696 23S rRNA m(5)U-1939 methyltransferase insig. 37 98
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3696 23S rRNA m(5)U-1939 methyltransferase insig. 37 98
o Pseudomonas fluorescens FW300-N2C3 AO356_19055 23S rRNA methyltransferase insig. 37 98
o Pseudomonas fluorescens FW300-N2E3 AO353_02715 23S rRNA methyltransferase sig. 38 98
o Pseudomonas fluorescens GW456-L13 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 sig. 37 98
o Alteromonas macleodii MIT1002 MIT1002_00793 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 32 98
  Paraburkholderia graminis OAS925 ABIE53_002059 putative RNA-binding protein with TRAM domain sig. 69 25
o Synechococcus elongatus PCC 7942 Synpcc7942_0241 rumA 23S rRNA (uracil-5-)-methyltransferase RumA cofit 29 98
o Synechocystis sp000284455 PCC 6803 SGL_RS06135 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 27 98
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_02005 23S rRNA (uracil-5-)-methyltransferase RumA insig. 29 98
o Desulfovibrio vulgaris Miyazaki F DvMF_1383 RNA methyltransferase, TrmA family (RefSeq) insig. 28 93
o Phaeobacter inhibens DSM 17395 PGA1_c34810 putative RNA methyltransferase insig. 30 94
o Dinoroseobacter shibae DFL-12 Dshi_3492 (Uracil-5)-methyltransferase (RefSeq) insig. 31 94
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0172 23S rRNA (uracil-5-)-methyltransferase RumA insig. 28 93
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS21250 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 27 98
o Desulfovibrio vulgaris Hildenborough JW710 DVU0924 rumA 23S rRNA (uracil-5-)-methyltransferase RumA (TIGR) insig. 26 93
o Azospirillum brasilense Sp245 AZOBR_RS01195 RNA methyltransferase insig. 31 96
o Agrobacterium fabrum C58 Atu0735 RNA methyltransferase insig. 30 98
o Bacteroides ovatus ATCC 8483 BACOVA_02267 23S rRNA (uracil-5-)-methyltransferase RumA cofit 26 100
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS02375 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 26 100
o Sphingomonas koreensis DSMZ 15582 Ga0059261_0648 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase insig. 32 86
o Magnetospirillum magneticum AMB-1 AMB_RS01660 class I SAM-dependent RNA methyltransferase insig. 31 96
o Cellulophaga baltica 18 M666_RS10255 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 24 98