Homologs of Dshi_2340 from Dinoroseobacter shibae DFL-12

ribonuclease, Rne/Rng family (RefSeq)
SEED: Ribonuclease E (EC 3.1.26.12)
KEGG: ribonuclease E

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Dinoroseobacter shibae DFL-12 Dshi_2340 ribonuclease, Rne/Rng family (RefSeq) sig. 100 100
  Phaeobacter inhibens DSM 17395 PGA1_c13450 ribonuclease E sig. 81 45
  Magnetospirillum magneticum AMB-1 AMB_RS16355 ribonuclease E/G no data 67 42
  Xanthobacter sp. DMC5 GFF427 Ribonuclease E no data 65 41
  Bosea sp. OAE506 ABIE41_RS16160 ribonuclease E/G no data 67 39
  Azospirillum sp. SherDot2 MPMX19_00338 Ribonuclease E no data 58 48
  Agrobacterium fabrum C58 Atu1339 ribonuclease E strong 64 41
  Sinorhizobium meliloti 1021 SMc01336 ribonuclease E protein no data 64 41
  Rhodopseudomonas palustris CGA009 TX73_012670 Rne/Rng family ribonuclease strong 57 49
  Azospirillum brasilense Sp245 AZOBR_RS11850 ribonuclease E no data 60 45
  Rhodospirillum rubrum S1H Rru_A2149 Ribonuclease E and G (NCBI) no data 64 40
  Sphingobium sp. HT1-2 GFF596 Ribonuclease E (EC 3.1.26.12) insig. 62 41
  Caulobacter crescentus NA1000 CCNA_01954 ribonuclease E strong 61 41
  Caulobacter crescentus NA1000 Δfur CCNA_01954 ribonuclease E cofit 61 41
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2699 ribonuclease, Rne/Rng family no data 64 39
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS04085 ribonuclease E/G insig. 59 40
  Pseudomonas stutzeri RCH2 Psest_1679 ribonuclease, Rne/Rng family strong 51 39
  Pseudomonas aeruginosa PA14 IKLFDK_15140 Ribonuclease G or E no data 51 39
  Pseudomonas sp. RS175 PFR28_03019 Ribonuclease E no data 51 39
  Pseudomonas sp. BP01 JOY50_RS16835 rne ribonuclease E insig. 51 39
  Pseudomonas fluorescens FW300-N2C3 AO356_20120 ribonuclease E no data 51 39
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5942 Ribonuclease E (EC 3.1.26.12) no data 51 39
  Pseudomonas simiae WCS417 PS417_21485 ribonuclease E no data 51 39
  Pseudomonas syringae pv. syringae B728a Psyr_1638 RNAse E sig. 50 39
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1638 RNAse E insig. 50 39
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2095 Ribonuclease E (EC 3.1.26.12) strong 51 39
  Pseudomonas fluorescens FW300-N2E3 AO353_01410 ribonuclease E strong 51 39
  Pseudomonas putida KT2440 PP_1905 ribonuclease E no data 51 39
  Pseudomonas sp. DMC3 GFF4766 Ribonuclease E cofit 50 39
  Pseudomonas sp. S08-1 OH686_22085 Ribonuclease E cofit 52 39
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_461 Ribonuclease E (EC 3.1.26.12) no data 51 39
  Pseudomonas lactucae CFBP13502 GEMAOFIL_04441 Ribonuclease E cofit 51 39
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF120 Ribonuclease E (EC 3.1.26.12) cofit 50 40
  Pseudomonas fluorescens SBW25 PFLU_RS23100 ribonuclease E cofit 51 39
  Pseudomonas fluorescens SBW25-INTG PFLU_RS23100 ribonuclease E strong 51 39
  Paraburkholderia sabiae LMG 24235 QEN71_RS04495 Rne/Rng family ribonuclease insig. 49 39
  Ralstonia solanacearum PSI07 RPSI07_RS19090 ribonuclease E/G no data 49 39
  Marinobacter adhaerens HP15 HP15_2222 ribonuclease, Rne/Rng family strong 49 39
  Alteromonas macleodii MIT1002 MIT1002_01724 Ribonuclease E cofit 51 39
  Ralstonia solanacearum GMI1000 RS_RS05150 ribonuclease E no data 49 39
  Cupriavidus basilensis FW507-4G11 RR42_RS14160 ribonuclease E no data 49 39
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS14370 ribonuclease E/G no data 49 39
  Ralstonia solanacearum UW163 UW163_RS11835 ribonuclease E/G no data 49 39
  Dechlorosoma suillum PS Dsui_2436 ribonuclease, Rne/Rng family strong 50 39
  Shewanella sp. ANA-3 Shewana3_2567 RNAse E (RefSeq) strong 49 39
  Ralstonia sp. UNC404CL21Col ABZR87_RS10085 Rne/Rng family ribonuclease strong 49 39
  Paraburkholderia graminis OAS925 ABIE53_003059 ribonuclease E strong 46 44
  Pseudomonas sp. SVBP6 COO64_RS05850 rne ribonuclease E insig. 50 39
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04339 RNAse E (EC 3.1.26.12) no data 47 44
  Shewanella oneidensis MR-1 SO2785 rne ribonuclease E (NCBI ptt file) strong 50 39
  Variovorax sp. OAS795 ABID97_RS08245 Rne/Rng family ribonuclease strong 50 39
  Acidovorax sp. GW101-3H11 Ac3H11_1592 Ribonuclease E (EC 3.1.26.12) no data 51 39
  Burkholderia phytofirmans PsJN BPHYT_RS14485 ribonuclease E strong 46 44
  Methylophilus sp. DMC18 GFF1176 Ribonuclease E no data 49 39
  Castellaniella sp019104865 MT123 ABCV34_RS08420 Rne/Rng family ribonuclease no data 48 39
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2614.1 Ribonuclease E (EC 3.1.26.12) insig. 49 39
  Variovorax sp. SCN45 GFF3845 Ribonuclease E (EC 3.1.26.12) cofit 50 39
  Shewanella loihica PV-4 Shew_1593 ribonuclease (RefSeq) insig. 48 39
  Lysobacter sp. OAE881 ABIE51_RS11805 ribonuclease E strong 49 39
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS11470 Rne/Rng family ribonuclease insig. 51 40
  Shewanella amazonensis SB2B Sama_1989 ribonuclease E (RefSeq) no data 51 37
  Rhodanobacter denitrificans MT42 LRK55_RS17745 Rne/Rng family ribonuclease insig. 51 40
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS17890 Rne/Rng family ribonuclease sig. 51 40
  Serratia liquefaciens MT49 IAI46_09750 ribonuclease E no data 52 37
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_00720 rne ribonuclease E cofit 51 37
  Rhodanobacter sp. FW510-T8 OKGIIK_07410 Ribonuclease E cofit 50 40
  Acinetobacter radioresistens SK82 MPMX26_00315 Ribonuclease E strong 50 37
  Erwinia tracheiphila SCR3 LU632_RS14860 rne ribonuclease E insig. 51 37
  Erwinia amylovora T8 OLJFJH_15570 ribonuclease E strong 51 37
  Dickeya dadantii 3937 DDA3937_RS13160 ribonuclease E insig. 51 37
  Dickeya dianthicola 67-19 HGI48_RS13225 ribonuclease E no data 51 37
  Dickeya dianthicola ME23 DZA65_RS13700 ribonuclease E sig. 51 37
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS02720 ribonuclease E insig. 51 39
  Pantoea sp. MT58 IAI47_12110 ribonuclease E sig. 50 37
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS05225 ribonuclease E sig. 51 37
  Acinetobacter baumannii LAC-4 RR41_RS16985 Rne/Rng family ribonuclease strong 49 39
  Herbaspirillum seropedicae SmR1 HSERO_RS09410 ribonuclease E no data 47 39
  Pectobacterium carotovorum WPP14 HER17_RS08610 ribonuclease E insig. 50 37
  Kangiella aquimarina DSM 16071 B158DRAFT_1771 ribonuclease, Rne/Rng family strong 52 38
  Vibrio cholerae E7946 ATCC 55056 CSW01_10145 ribonuclease E insig. 47 39
  Rahnella sp. WP5 EX31_RS24395 ribonuclease E sig. 51 37
  Klebsiella pneumoniae MKP103 KDGMDA_18655 ribonuclease E strong 47 39
  Enterobacter sp. TBS_079 MPMX20_01765 Ribonuclease E strong 49 37
  Klebsiella michiganensis M5al BWI76_RS11040 ribonuclease E sig. 49 37
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3365 Ribonuclease E (EC 3.1.26.12) no data 47 39
  Enterobacter asburiae PDN3 EX28DRAFT_1846 ribonuclease, Rne/Rng family no data 50 37
  Escherichia coli ECOR27 NOLOHH_21150 rne ribonuclease E sig. 49 37
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02581 Ribonuclease E insig. 49 37
  Escherichia coli Nissle 1917 ECOLIN_RS06270 ribonuclease E strong 49 37
  Escherichia coli ECRC62 BNILDI_19310 rne ribonuclease E strong 49 37
  Escherichia fergusonii Becca EFB2_02890 Ribonuclease E insig. 49 37
  Escherichia coli BL21 ECD_01080 endoribonuclease; RNA-binding protein strong 49 37
  Escherichia coli ECOR38 HEPCGN_23860 rne ribonuclease E strong 49 37
  Escherichia coli ECRC100 OKFHMN_03620 rne ribonuclease E cofit 49 37
  Escherichia coli ECRC101 MCAODC_22980 rne ribonuclease E sig. 49 37
  Escherichia coli ECRC102 NIAGMN_24210 rne ribonuclease E cofit 49 37
  Escherichia coli ECRC98 JDDGAC_07280 rne ribonuclease E strong 49 37
  Escherichia coli ECRC99 KEDOAH_24135 rne ribonuclease E no data 49 37
  Escherichia coli BW25113 b1084 rne fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI) strong 49 37
  Desulfovibrio vulgaris Miyazaki F DvMF_2376 ribonuclease, Rne/Rng family (RefSeq) no data 40 37