Homologs of SO1986 from Shewanella oneidensis MR-1

RNA polymerase sigma-70 factor, ECF subfamily (NCBI ptt file)
SEED: RNA polymerase sigma-70 factor, ECF subfamily
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella oneidensis MR-1 SO1986 RNA polymerase sigma-70 factor, ECF subfamily (NCBI ptt file) insig. 100 100
o Shewanella sp. ANA-3 Shewana3_2465 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 89 100
o Shewanella amazonensis SB2B Sama_2036 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 60 100
o Shewanella loihica PV-4 Shew_1476 RNA polymerase sigma factor (RefSeq) insig. 52 81
o Alteromonas macleodii MIT1002 MIT1002_02682 Sigma-W factor strong 40 89
  Vibrio cholerae E7946 ATCC 55056 CSW01_11715 RNA polymerase subunit sigma insig. 41 73
  Dinoroseobacter shibae DFL-12 Dshi_0366 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) insig. 41 77
  Marinobacter adhaerens HP15 HP15_270 RNA polymerase, sigma-24 subunit, ECF subfamily cofit 36 77
o Azospirillum sp. SherDot2 MPMX19_02022 ECF RNA polymerase sigma factor RpoE insig. 35 86
  Caulobacter crescentus NA1000 CCNA_00685 RNA polymerase sigma factor sig. 31 78
  Caulobacter crescentus NA1000 Δfur CCNA_00685 RNA polymerase sigma factor cofit 31 78
  Rhodospirillum rubrum S1H Rru_A0722 Sigma-24 (FecI) (NCBI) insig. 36 76
  Rhizobium sp. OAE497 ABIE40_RS18210 sigma-70 family RNA polymerase sigma factor insig. 34 77
o Bosea sp. OAE506 ABIE41_RS10280 sigma-70 family RNA polymerase sigma factor insig. 33 81
  Azospirillum brasilense Sp245 AZOBR_RS00810 RNA polymerase sigma factor RpoE insig. 35 77
  Rhodopseudomonas palustris CGA009 TX73_002850 sigma-70 family RNA polymerase sigma factor insig. 29 79
  Variovorax sp. OAS795 ABID97_RS21865 sigma-70 family RNA polymerase sigma factor insig. 34 76
  Phaeobacter inhibens DSM 17395 PGA1_c27510 'RNA polymerase sigma factor (sigma-70 family; ECF11 subgroup)' insig. 32 78
  Azospirillum sp. SherDot2 MPMX19_05229 ECF RNA polymerase sigma factor RpoE insig. 34 85
  Azospirillum sp. SherDot2 MPMX19_05742 hypothetical protein insig. 36 78
  Kangiella aquimarina DSM 16071 B158DRAFT_0930 RNA polymerase sigma factor, sigma-70 family insig. 35 73
  Xanthobacter sp. DMC5 GFF3078 ECF RNA polymerase sigma factor RpoE insig. 30 73
  Cellulophaga baltica 18 M666_RS08870 RNA polymerase sigma factor insig. 28 75
  Enterobacter asburiae PDN3 EX28DRAFT_2390 RNA polymerase sigma factor, sigma-70 family cofit 32 73
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS07500 sigma-70 family RNA polymerase sigma factor insig. 30 86
o Rhodanobacter sp. FW510-T8 OKGIIK_13920 RNA polymerase subunit sigma insig. 27 95
  Rhizobium sp. OAE497 ABIE40_RS26955 sigma-70 family RNA polymerase sigma factor insig. 34 76
  Azospirillum brasilense Sp245 AZOBR_RS21190 RNA polymerase sigma factor RpoE insig. 32 71
o Ralstonia sp. UNC404CL21Col ABZR87_RS16160 sigma-70 family RNA polymerase sigma factor insig. 29 92
  Rhodanobacter denitrificans MT42 LRK55_RS07240 sigma-70 family RNA polymerase sigma factor insig. 30 75
o Burkholderia phytofirmans PsJN BPHYT_RS22710 XRE family transcriptional regulator sig. 33 84
  Pseudomonas syringae pv. syringae B728a Psyr_0892 Sigma-70 region 2:Sigma-70 region 4 insig. 30 78
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0892 Sigma-70 region 2:Sigma-70 region 4 insig. 30 78
o Variovorax sp. SCN45 GFF3817 RNA polymerase sigma factor insig. 32 84
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS05845 sigma-70 family RNA polymerase sigma factor insig. 35 79
o Pseudomonas orientalis W4I3 QF045_RS00535 sigma-70 family RNA polymerase sigma factor cofit 29 81
  Variovorax sp. OAS795 ABID97_RS08165 sigma-70 family RNA polymerase sigma factor insig. 32 76
o Pseudomonas fluorescens FW300-N2E3 AO353_07625 RNA polymerase subunit sigma-70 insig. 29 81
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS04270 DNA-directed RNA polymerase sigma-70 factor insig. 35 73
  Ralstonia solanacearum UW163 UW163_RS09400 DNA-directed RNA polymerase sigma-70 factor insig. 35 73
o Pseudomonas fluorescens SBW25 PFLU_RS16335 sigma-70 family RNA polymerase sigma factor insig. 29 82
o Pseudomonas fluorescens SBW25-INTG PFLU_RS16335 sigma-70 family RNA polymerase sigma factor insig. 29 82
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS01495 sigma-70 family RNA polymerase sigma factor insig. 30 85
  Rhodanobacter sp. FW510-T8 OKGIIK_05040 RNA polymerase subunit sigma insig. 31 75
  Cupriavidus basilensis FW507-4G11 RR42_RS15915 RNA polymerase subunit sigma-24 insig. 31 74
  Ralstonia solanacearum PSI07 RPSI07_RS13090 DNA-directed RNA polymerase sigma-70 factor insig. 28 78
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3601.1 RNA polymerase sigma-70 factor insig. 29 73
o Herbaspirillum seropedicae SmR1 HSERO_RS12085 RNA polymerase sigma-E factor protein insig. 30 80
  Dinoroseobacter shibae DFL-12 Dshi_2428 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) insig. 35 73
  Alteromonas macleodii MIT1002 MIT1002_03202 Sigma-K factor insig. 32 73
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS18855 RNA polymerase sigma factor insig. 29 75
  Burkholderia phytofirmans PsJN BPHYT_RS21845 hypothetical protein insig. 28 77
  Rahnella sp. WP5 EX31_RS18905 sigma-70 family RNA polymerase sigma factor insig. 32 73
  Agrobacterium fabrum C58 Atu1982 sigma factor insig. 28 78
  Bosea sp. OAE506 ABIE41_RS11620 sigma-70 family RNA polymerase sigma factor insig. 27 78
  Marinobacter adhaerens HP15 HP15_950 RNA polymerase, sigma-24 subunit, ECF subfamily insig. 27 79
  Ralstonia solanacearum GMI1000 RS_RS11855 DNA-directed RNA polymerase sigma-70 factor insig. 30 79
  Agrobacterium fabrum C58 Atu0474 putative RNA polymerase sigma-70 factor insig. 27 80
  Marinobacter adhaerens HP15 HP15_3899 RNA polymerase, sigma-24 subunit, ECF subfamily insig. 28 80
  Acidovorax sp. GW101-3H11 Ac3H11_1622 RNA polymerase sigma factor insig. 29 78
  Acidovorax sp. GW101-3H11 Ac3H11_1599 RNA polymerase sigma factor insig. 26 78
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_02680 RNA polymerase subunit sigma-70 insig. 28 71
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01465 RNA polymerase sigma-70 factor, ECF subfamily insig. 26 78
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF329 RNA polymerase sigma-54 factor RpoN insig. 34 69
  Sinorhizobium meliloti 1021 SMa0143 RNA polymerase ECF sigma factor insig. 32 66
  Dinoroseobacter shibae DFL-12 Dshi_3423 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) insig. 27 73
  Paraburkholderia sabiae LMG 24235 QEN71_RS32245 RNA polymerase sigma factor insig. 32 74
o Mycobacterium tuberculosis H37Rv Rv0445c Alternative RNA polymerase sigma factor SigK insig. 28 81
  Rhizobium sp. OAE497 ABIE40_RS01975 sigma-70 family RNA polymerase sigma factor insig. 28 80
  Cellulophaga baltica 18 M666_RS18525 RNA polymerase sigma factor insig. 27 73
  Rhodopseudomonas palustris CGA009 TX73_003315 RNA polymerase sigma factor insig. 25 90
  Paraburkholderia sabiae LMG 24235 QEN71_RS00095 RNA polymerase sigma factor insig. 30 68
o Sphingomonas koreensis DSMZ 15582 Ga0059261_1715 RNA polymerase sigma factor, sigma-70 family insig. 29 80
  Caulobacter crescentus NA1000 CCNA_02837 RNA polymerase ECF-type sigma factor insig. 28 77
  Caulobacter crescentus NA1000 Δfur CCNA_02837 RNA polymerase ECF-type sigma factor cofit 28 77
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS13745 sigma-70 family RNA polymerase sigma factor insig. 24 79
  Paraburkholderia graminis OAS925 ABIE53_002425 RNA polymerase sigma-70 factor (ECF subfamily) insig. 32 68
  Bacteroides thetaiotaomicron VPI-5482 BT4571 RNA polymerase ECF-type sigma factor (NCBI ptt file) strong 27 77
  Synechocystis sp000284455 PCC 6803 SGL_RS14165 sigma-70 family RNA polymerase sigma factor insig. 29 77
o Pantoea sp. MT58 IAI47_20240 sigma-70 family RNA polymerase sigma factor insig. 25 83
  Erwinia amylovora T8 OLJFJH_08545 RNA polymerase subunit sigma-70 insig. 26 75
  Bosea sp. OAE506 ABIE41_RS04095 sigma-70 family RNA polymerase sigma factor strong 31 68
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06547 RNA polymerase sigma-70 factor, ECF subfamily insig. 29 70
  Marinobacter adhaerens HP15 HP15_p187g100 RNA polymerase sigma factor insig. 25 78
  Bacteroides thetaiotaomicron VPI-5482 BT3037 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 25 75
  Dinoroseobacter shibae DFL-12 Dshi_3835 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) insig. 28 70
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS08045 sigma-70 family RNA polymerase sigma factor cofit 27 73
  Burkholderia phytofirmans PsJN BPHYT_RS08240 RNA polymerase subunit sigma-24 sig. 30 68
  Pseudomonas segetis P6 MPMX49_02136 ECF RNA polymerase sigma factor SigM insig. 28 78
  Pseudomonas orientalis W4I3 QF045_RS17270 sigma-70 family RNA polymerase sigma factor insig. 25 77
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05124 RNA polymerase sigma-70 factor, ECF subfamily insig. 30 68
  Burkholderia phytofirmans PsJN BPHYT_RS24740 RNA polymerase subunit sigma-24 sig. 28 70
  Variovorax sp. SCN45 GFF4544 RNA polymerase sigma factor RpoE insig. 28 70
  Bacteroides ovatus ATCC 8483 BACOVA_01251 RNA polymerase sigma-70 factor sig. 26 73
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS24900 RNA polymerase subunit sigma-70 insig. 26 82
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF365 RNA polymerase sigma factor insig. 26 77
  Bacteroides stercoris CC31F HMPREF1181_RS04900 RNA polymerase sigma-70 factor insig. 24 72
  Synechococcus elongatus PCC 7942 Synpcc7942_2004 sigI RNA polymerase sigma factor insig. 27 73
  Rhodopseudomonas palustris CGA009 TX73_024905 sigma-70 family RNA polymerase sigma factor insig. 25 73
  Azospirillum brasilense Sp245 AZOBR_RS10625 RNA polymerase sigma-70 factor insig. 31 68