Homologs of SO1986 from Shewanella oneidensis MR-1

RNA polymerase sigma-70 factor, ECF subfamily (NCBI ptt file)
SEED: RNA polymerase sigma-70 factor, ECF subfamily
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

250 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella oneidensis MR-1 SO1986 RNA polymerase sigma-70 factor, ECF subfamily (NCBI ptt file) insig. 100 100
o Shewanella sp. ANA-3 Shewana3_2465 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 89 100
o Shewanella amazonensis SB2B Sama_2036 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 60 100
o Shewanella loihica PV-4 Shew_1476 RNA polymerase sigma factor (RefSeq) insig. 52 81
o Alteromonas macleodii MIT1002 MIT1002_02682 Sigma-W factor strong 40 89
  Vibrio cholerae E7946 ATCC 55056 CSW01_11715 RNA polymerase subunit sigma insig. 41 73
  Dinoroseobacter shibae DFL-12 Dshi_0366 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) insig. 41 77
  Marinobacter adhaerens HP15 HP15_270 RNA polymerase, sigma-24 subunit, ECF subfamily cofit 36 77
  Azospirillum sp. SherDot2 MPMX19_02022 ECF RNA polymerase sigma factor RpoE insig. 35 86
  Caulobacter crescentus NA1000 CCNA_00685 RNA polymerase sigma factor sig. 31 78
  Caulobacter crescentus NA1000 Δfur CCNA_00685 RNA polymerase sigma factor cofit 31 78
  Rhodospirillum rubrum S1H Rru_A0722 Sigma-24 (FecI) (NCBI) insig. 36 76
  Rhizobium sp. OAE497 ABIE40_RS18210 sigma-70 family RNA polymerase sigma factor insig. 34 77
  Bosea sp. OAE506 ABIE41_RS10280 sigma-70 family RNA polymerase sigma factor insig. 33 81
  Azospirillum brasilense Sp245 AZOBR_RS00810 RNA polymerase sigma factor RpoE insig. 35 77
  Rhodopseudomonas palustris CGA009 TX73_002850 sigma-70 family RNA polymerase sigma factor insig. 29 79
  Variovorax sp. OAS795 ABID97_RS21865 sigma-70 family RNA polymerase sigma factor insig. 34 76
  Phaeobacter inhibens DSM 17395 PGA1_c27510 'RNA polymerase sigma factor (sigma-70 family; ECF11 subgroup)' insig. 32 78
  Azospirillum sp. SherDot2 MPMX19_05229 ECF RNA polymerase sigma factor RpoE insig. 34 85
  Azospirillum sp. SherDot2 MPMX19_05742 hypothetical protein insig. 36 78
  Kangiella aquimarina DSM 16071 B158DRAFT_0930 RNA polymerase sigma factor, sigma-70 family insig. 35 73
  Xanthobacter sp. DMC5 GFF3078 ECF RNA polymerase sigma factor RpoE insig. 30 73
  Cellulophaga baltica 18 M666_RS08870 RNA polymerase sigma factor insig. 28 75
  Enterobacter asburiae PDN3 EX28DRAFT_2390 RNA polymerase sigma factor, sigma-70 family cofit 32 73
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS07500 sigma-70 family RNA polymerase sigma factor insig. 30 86
  Rhodanobacter sp. FW510-T8 OKGIIK_13920 RNA polymerase subunit sigma insig. 27 95
  Rhizobium sp. OAE497 ABIE40_RS26955 sigma-70 family RNA polymerase sigma factor insig. 34 76
  Azospirillum brasilense Sp245 AZOBR_RS21190 RNA polymerase sigma factor RpoE insig. 32 71
  Ralstonia sp. UNC404CL21Col ABZR87_RS16160 sigma-70 family RNA polymerase sigma factor insig. 29 92
  Rhodanobacter denitrificans MT42 LRK55_RS07240 sigma-70 family RNA polymerase sigma factor insig. 30 75
  Burkholderia phytofirmans PsJN BPHYT_RS22710 XRE family transcriptional regulator sig. 33 84
  Pseudomonas syringae pv. syringae B728a Psyr_0892 Sigma-70 region 2:Sigma-70 region 4 insig. 30 78
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0892 Sigma-70 region 2:Sigma-70 region 4 insig. 30 78
  Variovorax sp. SCN45 GFF3817 RNA polymerase sigma factor insig. 32 84
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS05845 sigma-70 family RNA polymerase sigma factor insig. 35 79
  Pseudomonas orientalis W4I3 QF045_RS00535 sigma-70 family RNA polymerase sigma factor cofit 29 81
  Variovorax sp. OAS795 ABID97_RS08165 sigma-70 family RNA polymerase sigma factor insig. 32 76
  Pseudomonas protegens RBAN4 FABNJH_28815 sigK RNA polymerase sigma factor SigK insig. 30 82
  Pseudomonas fluorescens FW300-N2E3 AO353_07625 RNA polymerase subunit sigma-70 insig. 29 81
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS04270 DNA-directed RNA polymerase sigma-70 factor insig. 35 73
  Ralstonia solanacearum UW163 UW163_RS09400 DNA-directed RNA polymerase sigma-70 factor insig. 35 73
  Pseudomonas fluorescens SBW25 PFLU_RS16335 sigma-70 family RNA polymerase sigma factor insig. 29 82
  Pseudomonas fluorescens SBW25-INTG PFLU_RS16335 sigma-70 family RNA polymerase sigma factor insig. 29 82
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS01495 sigma-70 family RNA polymerase sigma factor insig. 30 85
  Rhodanobacter sp. FW510-T8 OKGIIK_05040 RNA polymerase subunit sigma insig. 31 75
  Cupriavidus basilensis FW507-4G11 RR42_RS15915 RNA polymerase subunit sigma-24 insig. 31 74
  Ralstonia solanacearum PSI07 RPSI07_RS13090 DNA-directed RNA polymerase sigma-70 factor insig. 28 78
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3601.1 RNA polymerase sigma-70 factor insig. 29 73
  Herbaspirillum seropedicae SmR1 HSERO_RS12085 RNA polymerase sigma-E factor protein insig. 30 80
  Dinoroseobacter shibae DFL-12 Dshi_2428 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) insig. 35 73
  Alteromonas macleodii MIT1002 MIT1002_03202 Sigma-K factor insig. 32 73
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS18855 RNA polymerase sigma factor insig. 29 75
  Burkholderia phytofirmans PsJN BPHYT_RS21845 hypothetical protein insig. 28 77
  Rahnella sp. WP5 EX31_RS18905 sigma-70 family RNA polymerase sigma factor insig. 32 73
  Agrobacterium fabrum C58 Atu1982 sigma factor insig. 28 78
  Bosea sp. OAE506 ABIE41_RS11620 sigma-70 family RNA polymerase sigma factor insig. 27 78
  Marinobacter adhaerens HP15 HP15_950 RNA polymerase, sigma-24 subunit, ECF subfamily insig. 27 79
  Ralstonia solanacearum GMI1000 RS_RS11855 DNA-directed RNA polymerase sigma-70 factor insig. 30 79
  Agrobacterium fabrum C58 Atu0474 putative RNA polymerase sigma-70 factor insig. 27 80
  Marinobacter adhaerens HP15 HP15_3899 RNA polymerase, sigma-24 subunit, ECF subfamily insig. 28 80
  Acidovorax sp. GW101-3H11 Ac3H11_1622 RNA polymerase sigma factor insig. 29 78
  Acidovorax sp. GW101-3H11 Ac3H11_1599 RNA polymerase sigma factor insig. 26 78
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_02680 RNA polymerase subunit sigma-70 insig. 28 71
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01465 RNA polymerase sigma-70 factor, ECF subfamily insig. 26 78
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF329 RNA polymerase sigma-54 factor RpoN insig. 34 69
  Sinorhizobium meliloti 1021 SMa0143 RNA polymerase ECF sigma factor insig. 32 66
  Dinoroseobacter shibae DFL-12 Dshi_3423 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) insig. 27 73
  Paraburkholderia sabiae LMG 24235 QEN71_RS32245 RNA polymerase sigma factor insig. 32 74
  Mycobacterium tuberculosis H37Rv Rv0445c Alternative RNA polymerase sigma factor SigK insig. 28 81
  Rhizobium sp. OAE497 ABIE40_RS01975 sigma-70 family RNA polymerase sigma factor insig. 28 80
  Cellulophaga baltica 18 M666_RS18525 RNA polymerase sigma factor insig. 27 73
  Rhodopseudomonas palustris CGA009 TX73_003315 RNA polymerase sigma factor insig. 25 90
  Paraburkholderia sabiae LMG 24235 QEN71_RS00095 RNA polymerase sigma factor insig. 30 68
  Sphingomonas koreensis DSMZ 15582 Ga0059261_1715 RNA polymerase sigma factor, sigma-70 family insig. 29 80
  Caulobacter crescentus NA1000 CCNA_02837 RNA polymerase ECF-type sigma factor insig. 28 77
  Caulobacter crescentus NA1000 Δfur CCNA_02837 RNA polymerase ECF-type sigma factor cofit 28 77
  Paraburkholderia graminis OAS925 ABIE53_002425 RNA polymerase sigma-70 factor (ECF subfamily) insig. 32 68
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS20505 sigma-70 family RNA polymerase sigma factor insig. 24 79
  Bacteroides thetaiotaomicron VPI-5482 BT4571 RNA polymerase ECF-type sigma factor (NCBI ptt file) strong 27 77
  Synechocystis sp000284455 PCC 6803 SGL_RS14165 sigma-70 family RNA polymerase sigma factor insig. 29 77
  Pantoea sp. MT58 IAI47_20240 sigma-70 family RNA polymerase sigma factor insig. 25 83
  Erwinia amylovora T8 OLJFJH_08545 RNA polymerase subunit sigma-70 insig. 26 75
  Bosea sp. OAE506 ABIE41_RS04095 sigma-70 family RNA polymerase sigma factor strong 31 68
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06547 RNA polymerase sigma-70 factor, ECF subfamily insig. 29 70
  Marinobacter adhaerens HP15 HP15_p187g100 RNA polymerase sigma factor insig. 25 78
  Bacteroides thetaiotaomicron VPI-5482 BT3037 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 25 75
  Dinoroseobacter shibae DFL-12 Dshi_3835 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) insig. 28 70
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS19925 sigma-70 family RNA polymerase sigma factor insig. 27 73
  Burkholderia phytofirmans PsJN BPHYT_RS08240 RNA polymerase subunit sigma-24 sig. 30 68
  Pseudomonas segetis P6 ACVTMO_RS10610 RNA polymerase sigma factor insig. 28 78
  Pseudomonas orientalis W4I3 QF045_RS17270 sigma-70 family RNA polymerase sigma factor insig. 25 77
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05124 RNA polymerase sigma-70 factor, ECF subfamily insig. 30 68
  Burkholderia phytofirmans PsJN BPHYT_RS24740 RNA polymerase subunit sigma-24 sig. 28 70
  Variovorax sp. SCN45 GFF4544 RNA polymerase sigma factor RpoE insig. 28 70
  Bacteroides ovatus ATCC 8483 BACOVA_01251 RNA polymerase sigma-70 factor sig. 26 73
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS24900 RNA polymerase subunit sigma-70 insig. 26 82
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF365 RNA polymerase sigma factor insig. 26 77
  Bacteroides stercoris CC31F HMPREF1181_RS04900 RNA polymerase sigma-70 factor insig. 24 72
  Synechococcus elongatus PCC 7942 Synpcc7942_2004 sigI RNA polymerase sigma factor insig. 27 73
  Rhodopseudomonas palustris CGA009 TX73_024905 sigma-70 family RNA polymerase sigma factor insig. 25 73
  Azospirillum brasilense Sp245 AZOBR_RS10625 RNA polymerase sigma-70 factor insig. 31 68
  Paraburkholderia graminis OAS925 ABIE53_006215 RNA polymerase sigma-70 factor (ECF subfamily) insig. 29 70
  Azospirillum sp. SherDot2 MPMX19_01371 hypothetical protein insig. 29 69
  Azospirillum brasilense Sp245 AZOBR_RS23735 RNA polymerase no data 28 68
  Bosea sp. OAE506 ABIE41_RS07610 sigma-70 family RNA polymerase sigma factor insig. 27 77
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS10790 RNA polymerase sigma factor insig. 26 77
  Sphingobium sp. HT1-2 GFF5325 RNA polymerase ECF-type sigma factor cofit 30 68
  Pantoea sp. MT58 IAI47_19735 sigma-70 family RNA polymerase sigma factor insig. 27 73
  Azospirillum sp. SherDot2 MPMX19_05214 ECF RNA polymerase sigma factor SigE insig. 26 84
  Paraburkholderia graminis OAS925 ABIE53_005321 RNA polymerase sigma factor (sigma-70 family) sig. 24 81
  Variovorax sp. OAS795 ABID97_RS24815 sigma-70 family RNA polymerase sigma factor insig. 31 74
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_02732 RNA polymerase sigma-70 factor, ECF subfamily insig. 26 81
  Sphingobium sp. HT1-2 GFF5151 RNA polymerase ECF-type sigma factor cofit 30 70
  Pseudomonas sp. S08-1 OH686_11525 hypothetical protein cofit 27 68
  Rhodopseudomonas palustris CGA009 TX73_009355 sigma-70 family RNA polymerase sigma factor insig. 26 77
  Sphingobium sp. HT1-2 GFF4975 RNA polymerase ECF-type sigma factor cofit 30 70
  Paraburkholderia sabiae LMG 24235 QEN71_RS23005 sigma-70 family RNA polymerase sigma factor insig. 30 68
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_11515 RNA polymerase sigma-70 factor insig. 24 78
  Pseudomonas fluorescens SBW25 PFLU_RS13305 sigma-70 family RNA polymerase sigma factor insig. 22 77
  Pseudomonas fluorescens SBW25-INTG PFLU_RS13305 sigma-70 family RNA polymerase sigma factor sig. 22 77
  Bacteroides thetaiotaomicron VPI-5482 BT0188 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 24 73
  Acidovorax sp. GW101-3H11 Ac3H11_916 RNA polymerase sigma-70 factor insig. 31 73
  Phocaeicola dorei CL03T12C01 ABI39_RS09920 sigma-70 family RNA polymerase sigma factor insig. 29 82
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3492 RNA polymerase sigma factor, sigma-70 family strong 29 71
  Rhodopseudomonas palustris CGA009 TX73_009325 sigma-70 family RNA polymerase sigma factor insig. 28 77
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4220 RNA polymerase sigma factor RpoE insig. 28 72
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS02635 RNA polymerase sigma factor insig. 33 69
  Alteromonas macleodii MIT1002 MIT1002_00882 Sigma-W factor insig. 26 77
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS14290 sigma-70 family RNA polymerase sigma factor insig. 29 82
  Phaeobacter inhibens DSM 17395 PGA1_c08510 RNA polymerase sigma factor (ECF01 subgroup, ECF20 subgroup) insig. 26 79
  Azospirillum brasilense Sp245 AZOBR_RS06360 RNA polymerase subunit sigma-24 no data 26 72
  Pseudomonas simiae WCS417 PS417_11995 RNA polymerase sigma factor insig. 25 81
  Rhizobium sp. OAE497 ABIE40_RS14450 RNA polymerase sigma factor insig. 25 68
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2047 RNA polymerase sigma factor, sigma-70 family strong 25 83
  Xanthobacter sp. DMC5 GFF2321 ECF RNA polymerase sigma factor EcfG no data 32 71
  Pseudomonas simiae WCS417 PS417_00810 RNA polymerase sigma factor insig. 27 81
  Cupriavidus basilensis FW507-4G11 RR42_RS05810 RNA polymerase sigma factor insig. 24 81
  Phocaeicola dorei CL03T12C01 ABI39_RS02030 RNA polymerase sigma-70 factor insig. 24 73
  Cellulophaga baltica 18 M666_RS08855 sigma-70 family RNA polymerase sigma factor strong 27 74
  Bifidobacterium breve UCC2003 BBR_RS15930 RNA polymerase sigma factor insig. 24 79
  Pseudomonas putida KT2440 PP_3006 RNA polymerase sigma-70 factor, ECF subfamily insig. 23 74
  Mycobacterium tuberculosis H37Rv Rv1221 Alternative RNA polymerase sigma factor SigE insig. 31 60
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS12920 RNA polymerase sigma-70 factor cofit 26 77
  Pseudomonas sp. BP01 JOY50_RS12975 sigma-70 family RNA polymerase sigma factor insig. 23 77
  Sphingobium sp. HT1-2 GFF2317 RNA polymerase ECF-type sigma factor cofit 28 80
  Phaeobacter inhibens DSM 17395 PGA1_c27070 RNA polymerase sigma factor 70 (ECF15 subgroup, ECF26 subgroup) insig. 27 70
  Paraburkholderia graminis OAS925 ABIE53_003943 RNA polymerase sigma-70 factor (ECF subfamily) sig. 30 67
  Kangiella aquimarina DSM 16071 B158DRAFT_0139 RNA polymerase sigma factor, sigma-70 family insig. 29 72
  Pseudomonas fluorescens FW300-N2C3 AO356_10740 RNA polymerase subunit sigma insig. 29 73
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05735 RNA polymerase sigma-70 factor insig. 22 73
  Pseudomonas aeruginosa MRSN321 DY961_RS02510 sbrI;inference=COORDINATES ECF family RNA polymerase sigma factor SbrI insig. 28 73
  Pseudomonas aeruginosa PUPa3 DQ20_RS33080 sbrI;inference=COORDINATES ECF family RNA polymerase sigma factor SbrI insig. 28 73
  Agrobacterium fabrum C58 Atu4160 RNA polymerase sigma factor strong 27 70
  Pseudomonas fluorescens SBW25 PFLU_RS00840 RNA polymerase sigma factor insig. 27 81
  Pseudomonas fluorescens SBW25-INTG PFLU_RS00840 RNA polymerase sigma factor sig. 27 81
  Pseudomonas lactucae CFBP13502 GEMAOFIL_00391 RNA polymerase sigma-H factor cofit 26 81
  Sinorhizobium meliloti 1021 SMc01506 RNA polymerase sigma factor strong 24 70
  Variovorax sp. SCN45 GFF4503 RNA polymerase sigma factor insig. 21 77
  Bacteroides thetaiotaomicron VPI-5482 BT3190 putative RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 28 74
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3853 RNA polymerase sigma factor, sigma-70 family insig. 28 71
  Bacteroides ovatus ATCC 8483 BACOVA_00669 Sigma-70 region 2 insig. 26 79
  Pseudomonas orientalis W4I3 QF045_RS03845 RNA polymerase sigma factor insig. 26 81
  Azospirillum sp. SherDot2 MPMX19_00764 ECF RNA polymerase sigma factor EcfG insig. 25 73
  Pseudomonas syringae pv. syringae B728a Psyr_0362 Sigma-70 region 2 insig. 21 77
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0362 Sigma-70 region 2 insig. 21 77
  Pseudomonas aeruginosa PA14 IKLFDK_14715 ECF family RNA polymerase sigma factor SbrI insig. 28 73
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS24230 RNA polymerase sigma factor strong 31 73
  Cupriavidus basilensis FW507-4G11 RR42_RS32410 RNA polymerase subunit sigma-24 no data 31 69
  Pseudomonas protegens RBAN4 FABNJH_20920 RNA polymerase sigma factor insig. 24 81
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05041 RNA polymerase sigma-70 factor, ECF subfamily insig. 30 67
  Dechlorosoma suillum PS Dsui_1302 RNA polymerase sigma factor, sigma-70 family cofit 28 69
  Agrobacterium fabrum C58 Atu3084 RNA polymerase sigma factor insig. 25 79
  Alteromonas macleodii MIT1002 MIT1002_03872 RNA polymerase sigma factor SigM insig. 25 72
  Bacteroides thetaiotaomicron VPI-5482 BT3277 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 25 78
  Pseudomonas segetis P6 ACVTMO_RS06730 sigma-70 family RNA polymerase sigma factor insig. 21 77
  Pseudomonas sp. RS175 PFR28_04750 RNA polymerase sigma-H factor insig. 30 73
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS07040 RNA polymerase sigma factor insig. 28 81
  Bacteroides stercoris CC31F HMPREF1181_RS01060 RNA polymerase sigma-70 factor insig. 26 73
  Dickeya dadantii 3937 DDA3937_RS11055 sigma-70 family RNA polymerase sigma factor insig. 32 60
  Dickeya dianthicola 67-19 HGI48_RS11075 sigma-70 family RNA polymerase sigma factor insig. 32 60
  Paraburkholderia sabiae LMG 24235 QEN71_RS36705 RNA polymerase sigma factor insig. 28 72
  Pseudomonas sp. DMC3 GFF1392 ECF RNA polymerase sigma factor SigK cofit 20 77
  Pseudomonas protegens RBAN4 FABNJH_00920 RNA polymerase sigma factor insig. 28 73
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1476 RNA polymerase sigma factor, sigma-70 family insig. 27 72
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_4608 RNA polymerase sigma factor, sigma-70 family insig. 22 72
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1512.1 RNA polymerase sigma-70 factor insig. 30 61
  Enterobacter asburiae PDN3 EX28DRAFT_2729 RNA polymerase sigma factor, sigma-70 family insig. 30 63
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4018 RNA polymerase sigma-E factor insig. 28 73
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3183.1 RNA polymerase sigma factor RpoE insig. 27 81
  Rhodanobacter denitrificans MT42 LRK55_RS04975 sigma-70 family RNA polymerase sigma factor cofit 27 74
  Pseudomonas lactucae CFBP13502 GEMAOFIL_02674 hypothetical protein cofit 27 81
  Paraburkholderia graminis OAS925 ABIE53_003919 RNA polymerase sigma-70 factor (ECF subfamily) insig. 30 65
  Herbaspirillum seropedicae SmR1 HSERO_RS09625 RNA polymerase sigma factor RpoE no data 27 79
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS05195 sigma-70 family RNA polymerase sigma factor insig. 27 74
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS04785 sigma-70 family RNA polymerase sigma factor insig. 26 73
  Bacteroides thetaiotaomicron VPI-5482 BT2044 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 26 79
  Rhodopseudomonas palustris CGA009 TX73_023085 RNA polymerase sigma factor cofit 26 79
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS13970 RNA polymerase sigma factor cofit 26 72
  Pectobacterium carotovorum WPP14 HER17_RS09715 sigma-70 family RNA polymerase sigma factor cofit 32 60
  Caulobacter crescentus NA1000 CCNA_01721 RNA polymerase ECF sigma factor sig. 31 50
  Caulobacter crescentus NA1000 Δfur CCNA_01721 RNA polymerase ECF sigma factor insig. 31 50
  Pseudomonas fluorescens SBW25 PFLU_RS12745 RNA polymerase sigma factor insig. 27 81
  Pseudomonas fluorescens SBW25-INTG PFLU_RS12745 RNA polymerase sigma factor insig. 27 81
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS11460 hypothetical protein insig. 24 68
  Ralstonia solanacearum GMI1000 RS_RS14950 RNA polymerase sigma factor no data 28 68
  Pseudomonas fluorescens SBW25 PFLU_RS03525 RNA polymerase sigma factor insig. 28 65
  Pseudomonas fluorescens SBW25-INTG PFLU_RS03525 RNA polymerase sigma factor insig. 28 65
  Bacteroides thetaiotaomicron VPI-5482 BT4347 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 26 60
  Azospirillum brasilense Sp245 AZOBR_RS28490 hypothetical protein sig. 23 82
  Rhizobium sp. OAE497 ABIE40_RS01010 sigma-70 family RNA polymerase sigma factor insig. 29 78
  Pantoea sp. MT58 IAI47_21640 sigma-70 family RNA polymerase sigma factor insig. 28 65
  Pseudomonas simiae WCS417 PS417_03450 RNA polymerase sigma factor insig. 28 65
  Rhodopseudomonas palustris CGA009 TX73_008400 sigma-70 family RNA polymerase sigma factor insig. 26 78
  Variovorax sp. SCN45 GFF2126 hypothetical protein no data 31 74
  Rhizobium sp. OAE497 ABIE40_RS03400 RNA polymerase sigma factor insig. 29 58
  Ralstonia solanacearum PSI07 RPSI07_RS10230 RNA polymerase sigma factor no data 28 68
  Methylophilus sp. DMC18 GFF2730 RNA polymerase sigma-H factor no data 25 79
  Pseudomonas stutzeri RCH2 Psest_3456 RNA polymerase sigma factor, sigma-70 family insig. 28 75
  Pseudomonas fluorescens SBW25 PFLU_RS19010 sigma-70 family RNA polymerase sigma factor insig. 28 67
  Pseudomonas fluorescens SBW25-INTG PFLU_RS19010 sigma-70 family RNA polymerase sigma factor sig. 28 67
  Rhodopseudomonas palustris CGA009 TX73_021900 sigma-70 family RNA polymerase sigma factor strong 28 68
  Sinorhizobium meliloti 1021 SMc02713 RNA polymerase sigma-E factor (sigma-24) protein strong 25 68
  Burkholderia phytofirmans PsJN BPHYT_RS24975 RNA polymerase sigma24 factor strong 23 81
  Rhizobium sp. OAE497 ABIE40_RS22730 RNA polymerase sigma factor insig. 27 71
  Bacteroides ovatus ATCC 8483 BACOVA_02944 RNA polymerase sigma-70 factor insig. 25 73
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_13620 RNA polymerase subunit sigma insig. 22 74
  Herbaspirillum seropedicae SmR1 HSERO_RS16195 RNA polymerase sigma factor insig. 28 71
  Synechocystis sp000284455 PCC 6803 SGL_RS08165 sigma-70 family RNA polymerase sigma factor strong 27 81
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS06645 RNA polymerase sigma-70 factor insig. 23 75
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3485 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 24 70
  Pseudomonas fluorescens FW300-N2E3 AO353_21275 RNA polymerase subunit sigma insig. 31 59
  Pseudomonas orientalis W4I3 QF045_RS06435 RNA polymerase sigma factor insig. 27 65
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS00445 sigma-70 family RNA polymerase sigma factor insig. 26 74
  Bacteroides stercoris CC31F HMPREF1181_RS08110 sigma-70 family RNA polymerase sigma factor insig. 25 78
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS14155 RNA polymerase sigma-70 factor insig. 22 81
  Acidovorax sp. GW101-3H11 Ac3H11_1573 RNA polymerase sigma factor RpoE no data 27 74
  Pseudomonas simiae WCS417 PS417_17070 RNA polymerase subunit sigma-24 insig. 28 67
  Pseudomonas lactucae CFBP13502 GEMAOFIL_00902 ECF RNA polymerase sigma factor SigC insig. 28 68
  Shewanella sp. ANA-3 Shewana3_0763 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 24 71
  Phocaeicola dorei CL03T12C01 ABI39_RS03220 RNA polymerase sigma-70 factor insig. 24 71
  Serratia liquefaciens MT49 IAI46_22980 RNA polymerase sigma factor insig. 28 64
  Sphingobium sp. HT1-2 GFF2028 hypothetical protein cofit 27 68
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_00665 RNA polymerase subunit sigma-24 strong 25 72
  Bacteroides ovatus ATCC 8483 BACOVA_00098 RNA polymerase sigma-70 factor insig. 25 75
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS21720 RNA polymerase subunit sigma-70 insig. 24 77
  Rhodanobacter sp. FW510-T8 OKGIIK_07900 rpoE RNA polymerase sigma factor RpoE strong 24 86
  Bacteroides ovatus ATCC 8483 BACOVA_03283 RNA polymerase sigma-70 factor insig. 23 70
  Pseudomonas simiae WCS417 PS417_12610 RNA polymerase sigma factor sig. 19 77
  Bacteroides ovatus ATCC 8483 BACOVA_02727 RNA polymerase sigma-70 factor insig. 18 72
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS12005 RNA polymerase sigma factor RpoE no data 23 86