Conservation of cofitness between Xcc-8004.1710.1 and Xcc-8004.2948.1 in Xanthomonas campestris pv. campestris strain 8004

95 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.1710.1 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 1.0 Xcc-8004.2948.1 Histidinol dehydrogenase (EC 1.1.1.23) 0.66 7
Lysobacter sp. OAE881 0.59 ABIE51_RS16065 pyrroline-5-carboxylate reductase 0.64 ABIE51_RS13325 histidinol dehydrogenase 0.83 41
Dyella japonica UNC79MFTsu3.2 0.49 ABZR86_RS10425 pyrroline-5-carboxylate reductase 0.58 ABZR86_RS06730 histidinol dehydrogenase 0.92 8
Rhodanobacter sp. FW510-T8 0.47 OKGIIK_11135 proC pyrroline-5-carboxylate reductase 0.58 OKGIIK_04950 hisD histidinol dehydrogenase low > 52
Pseudomonas sp. S08-1 0.46 OH686_10980 pyrroline-5-carboxylate reductase 0.37 OH686_08470 Histidinol dehydrogenase 0.77 1
Rhodanobacter denitrificans MT42 0.45 LRK55_RS04030 pyrroline-5-carboxylate reductase 0.58 LRK55_RS01385 histidinol dehydrogenase — —
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS04260 pyrroline-5-carboxylate reductase 0.58 LRK54_RS01605 histidinol dehydrogenase 0.70 33
Pseudomonas stutzeri RCH2 0.44 Psest_0283 pyrroline-5-carboxylate reductase 0.38 Psest_3298 histidinol dehydrogenase — —
Pseudomonas putida KT2440 0.43 PP_5095 pyrroline-5-carboxylate reductase 0.38 PP_0966 Histidinol dehydrogenase 0.45 12
Pseudomonas fluorescens FW300-N2E2 0.43 Pf6N2E2_4600 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.37 Pf6N2E2_3252 Histidinol dehydrogenase (EC 1.1.1.23) — —
Pseudomonas fluorescens FW300-N2C3 0.42 AO356_13420 pyrroline-5-carboxylate reductase 0.37 AO356_06965 histidinol dehydrogenase — —
Pseudomonas syringae pv. syringae B728a 0.41 Psyr_0476 pyrroline-5-carboxylate reductase 0.37 Psyr_4133 histidinol dehydrogenase — —
Pseudomonas sp. RS175 0.41 PFR28_04243 Pyrroline-5-carboxylate reductase 0.37 PFR28_00187 Histidinol dehydrogenase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.41 Psyr_0476 pyrroline-5-carboxylate reductase 0.37 Psyr_4133 histidinol dehydrogenase 0.77 25
Pseudomonas fluorescens FW300-N1B4 0.41 Pf1N1B4_2341 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.37 Pf1N1B4_1066 Histidinol dehydrogenase (EC 1.1.1.23) — —
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_08165 pyrroline-5-carboxylate reductase 0.37 AO353_05110 histidinol dehydrogenase 0.64 35
Pseudomonas fluorescens SBW25-INTG 0.41 PFLU_RS28375 pyrroline-5-carboxylate reductase 0.36 PFLU_RS04470 histidinol dehydrogenase — —
Pseudomonas fluorescens SBW25 0.41 PFLU_RS28375 pyrroline-5-carboxylate reductase 0.36 PFLU_RS04470 histidinol dehydrogenase — —
Pseudomonas simiae WCS417 0.41 PS417_26730 pyrroline-5-carboxylate reductase 0.36 PS417_04420 histidinol dehydrogenase 0.56 14
Pseudomonas fluorescens GW456-L13 0.40 PfGW456L13_1010 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.36 PfGW456L13_5000 Histidinol dehydrogenase (EC 1.1.1.23) 0.88 20
Marinobacter adhaerens HP15 0.37 HP15_287 pyrroline-5-carboxylate reductase 0.38 HP15_2428 histidinol dehydrogenase 0.69 11
Dechlorosoma suillum PS 0.36 Dsui_0602 pyrroline-5-carboxylate reductase 0.36 Dsui_1411 histidinol dehydrogenase — —
Variovorax sp. OAS795 0.35 ABID97_RS01555 pyrroline-5-carboxylate reductase 0.37 ABID97_RS23160 histidinol dehydrogenase — —
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS26600 pyrroline-5-carboxylate reductase 0.34 QEN71_RS27865 histidinol dehydrogenase 0.89 33
Kangiella aquimarina DSM 16071 0.35 B158DRAFT_0197 pyrroline-5-carboxylate reductase 0.27 B158DRAFT_2293 histidinol dehydrogenase low > 40
Ralstonia sp. UNC404CL21Col 0.34 ABZR87_RS01230 pyrroline-5-carboxylate reductase 0.34 ABZR87_RS02500 histidinol dehydrogenase — —
Acidovorax sp. GW101-3H11 0.34 Ac3H11_788 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.36 Ac3H11_4724 Histidinol dehydrogenase (EC 1.1.1.23) — —
Ralstonia solanacearum GMI1000 0.34 RS_RS13440 pyrroline-5-carboxylate reductase 0.33 RS_RS14790 histidinol dehydrogenase — —
Acinetobacter radioresistens SK82 0.34 MPMX26_00572 Pyrroline-5-carboxylate reductase 0.36 MPMX26_02587 Histidinol dehydrogenase 0.71 27
Hydrogenophaga sp. GW460-11-11-14-LB1 0.33 GFF2806 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.36 GFF1314 Histidinol dehydrogenase (EC 1.1.1.23) — —
Paraburkholderia graminis OAS925 0.33 ABIE53_000840 pyrroline-5-carboxylate reductase 0.34 ABIE53_003701 histidinol dehydrogenase — —
Variovorax sp. SCN45 0.33 GFF5553 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.36 GFF5345 Histidinol dehydrogenase (EC 1.1.1.23) — —
Ralstonia solanacearum IBSBF1503 0.33 RALBFv3_RS05580 pyrroline-5-carboxylate reductase 0.34 RALBFv3_RS06845 histidinol dehydrogenase — —
Ralstonia solanacearum UW163 0.33 UW163_RS08045 pyrroline-5-carboxylate reductase 0.34 UW163_RS06770 histidinol dehydrogenase — —
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_04679 pyrroline-5-carboxylate reductase 0.34 H281DRAFT_05652 histidinol dehydrogenase — —
Ralstonia solanacearum PSI07 0.33 RPSI07_RS11720 pyrroline-5-carboxylate reductase 0.34 RPSI07_RS10390 histidinol dehydrogenase — —
Dickeya dadantii 3937 0.32 DDA3937_RS17305 pyrroline-5-carboxylate reductase 0.52 DDA3937_RS09735 histidinol dehydrogenase 0.77 9
Burkholderia phytofirmans PsJN 0.32 BPHYT_RS03490 pyrroline-5-carboxylate reductase 0.35 BPHYT_RS17710 histidinol dehydrogenase — —
Shewanella sp. ANA-3 0.32 Shewana3_1193 pyrroline-5-carboxylate reductase (RefSeq) 0.48 Shewana3_1853 hisD histidinol dehydrogenase (RefSeq) 0.93 25
Shewanella oneidensis MR-1 0.32 SO3354 proC pyrroline-5-carboxylate reductase (NCBI ptt file) 0.48 SO2073 hisD histidinol dehydrogenase (NCBI ptt file) 0.98 9
Serratia liquefaciens MT49 0.32 IAI46_21415 pyrroline-5-carboxylate reductase 0.50 IAI46_08210 histidinol dehydrogenase low > 86
Dickeya dianthicola ME23 0.32 DZA65_RS18440 pyrroline-5-carboxylate reductase 0.50 DZA65_RS10055 histidinol dehydrogenase — —
Cupriavidus basilensis FW507-4G11 0.32 RR42_RS17360 pyrroline-5-carboxylate reductase 0.37 RR42_RS18915 histidinol dehydrogenase — —
Dickeya dianthicola 67-19 0.32 HGI48_RS17350 pyrroline-5-carboxylate reductase 0.51 HGI48_RS09745 histidinol dehydrogenase — —
Shewanella loihica PV-4 0.30 Shew_3016 pyrroline-5-carboxylate reductase (RefSeq) 0.51 Shew_2198 histidinol dehydrogenase (RefSeq) low > 60
Rahnella sp. WP5 0.30 EX31_RS02690 pyrroline-5-carboxylate reductase 0.50 EX31_RS11440 histidinol dehydrogenase 0.96 29
Herbaspirillum seropedicae SmR1 0.30 HSERO_RS18990 pyrroline-5-carboxylate reductase 0.35 HSERO_RS20345 histidinol dehydrogenase 0.81 7
Pectobacterium carotovorum WPP14 0.30 HER17_RS03805 pyrroline-5-carboxylate reductase 0.53 HER17_RS12230 histidinol dehydrogenase — —
Shewanella amazonensis SB2B 0.30 Sama_2478 pyrroline-5-carboxylate reductase (RefSeq) 0.49 Sama_1942 hisD histidinol dehydrogenase (RefSeq) 0.94 27
Alteromonas macleodii MIT1002 0.30 MIT1002_03062 Pyrroline-5-carboxylate reductase 0.49 MIT1002_02633 Histidinol dehydrogenase 0.98 1
Vibrio cholerae E7946 ATCC 55056 0.30 CSW01_02450 pyrroline-5-carboxylate reductase 0.50 CSW01_05750 histidinol dehydrogenase low > 62
Castellaniella sp019104865 MT123 0.29 ABCV34_RS03610 pyrroline-5-carboxylate reductase 0.32 ABCV34_RS11230 histidinol dehydrogenase low > 48
Magnetospirillum magneticum AMB-1 0.28 AMB_RS02820 pyrroline-5-carboxylate reductase 0.34 AMB_RS16905 histidinol dehydrogenase — —
Azospirillum sp. SherDot2 0.28 MPMX19_01399 Pyrroline-5-carboxylate reductase 0.33 MPMX19_05543 Histidinol dehydrogenase — —
Rhodospirillum rubrum S1H 0.27 Rru_A3281 Delta 1-pyrroline-5-carboxylate reductase (NCBI) 0.33 Rru_A2771 Histidinol dehydrogenase (NCBI) — —
Agrobacterium fabrum C58 0.27 Atu2209 pyrroline-5-carboxylate reductase 0.34 Atu0537 histidinol dehydrogenase 0.57 55
Phaeobacter inhibens DSM 17395 0.26 PGA1_c24700 pyrroline-5-carboxylate reductase ProC 0.34 PGA1_c31190 histidinol dehydrogenase HisD — —
Synechococcus elongatus PCC 7942 0.26 Synpcc7942_2058 proC pyrroline-5-carboxylate reductase 0.37 Synpcc7942_1519 hisD histidinol dehydrogenase — —
Rhodopseudomonas palustris CGA009 0.25 TX73_022630 pyrroline-5-carboxylate reductase 0.34 TX73_023540 histidinol dehydrogenase — —
Rhizobium sp. OAE497 0.25 ABIE40_RS13005 pyrroline-5-carboxylate reductase 0.35 ABIE40_RS02725 histidinol dehydrogenase 0.69 40
Escherichia fergusonii Becca 0.24 EFB2_03670 Pyrroline-5-carboxylate reductase 0.51 EFB2_01836 Histidinol dehydrogenase low > 86
Klebsiella michiganensis M5al 0.24 BWI76_RS06170 pyrroline-5-carboxylate reductase 0.51 BWI76_RS18925 histidinol dehydrogenase — —
Escherichia coli ECRC99 0.24 KEDOAH_19355 proC pyrroline-5-carboxylate reductase 0.51 KEDOAH_03635 hisD Histidinol dehydrogenase — —
Escherichia coli ECRC100 0.24 OKFHMN_08610 proC pyrroline-5-carboxylate reductase 0.51 OKFHMN_24515 hisD Histidinol dehydrogenase low > 80
Escherichia coli ECRC102 0.24 NIAGMN_06665 proC pyrroline-5-carboxylate reductase 0.51 NIAGMN_22460 hisD Histidinol dehydrogenase — —
Escherichia coli ECRC98 0.24 JDDGAC_12265 proC pyrroline-5-carboxylate reductase 0.51 JDDGAC_28625 hisD Histidinol dehydrogenase 0.71 43
Escherichia coli Nissle 1917 0.24 ECOLIN_RS02345 pyrroline-5-carboxylate reductase 0.51 ECOLIN_RS11945 histidinol dehydrogenase — —
Escherichia coli ECRC101 0.24 MCAODC_27835 proC pyrroline-5-carboxylate reductase 0.51 MCAODC_20425 hisD Histidinol dehydrogenase 0.83 22
Escherichia coli ECOR38 0.24 HEPCGN_07250 proC pyrroline-5-carboxylate reductase 0.51 HEPCGN_03220 hisD Histidinol dehydrogenase 0.83 45
Escherichia coli BL21 0.24 ECD_00333 pyrroline-5-carboxylate reductase, NAD(P)-binding 0.51 ECD_01922 bifunctional histidinal dehydrogenase/ histidinol dehydrogenase 0.84 2
Escherichia coli BW25113 0.24 b0386 proC pyrroline-5-carboxylate reductase (NCBI) 0.51 b2020 hisD histidinol dehydrogenase (NCBI) 0.86 15
Escherichia coli ECOR27 0.24 NOLOHH_01535 proC pyrroline-5-carboxylate reductase 0.51 NOLOHH_15830 hisD Histidinol dehydrogenase 0.85 50
Escherichia coli ECRC62 0.24 BNILDI_22950 proC pyrroline-5-carboxylate reductase 0.51 BNILDI_14740 hisD Histidinol dehydrogenase 0.78 42
Escherichia coli HS(pFamp)R (ATCC 700891) 0.24 OHPLBJKB_03288 Pyrroline-5-carboxylate reductase 0.50 OHPLBJKB_01680 Histidinol dehydrogenase low > 73
Pantoea sp. MT58 0.24 IAI47_14945 pyrroline-5-carboxylate reductase 0.50 IAI47_07090 histidinol dehydrogenase 0.84 22
Enterobacter asburiae PDN3 0.23 EX28DRAFT_2585 pyrroline-5-carboxylate reductase 0.49 EX28DRAFT_0539 histidinol dehydrogenase 0.68 18
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.23 GFF4283 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.50 GFF3912 Histidinol dehydrogenase (EC 1.1.1.23) low > 78
Enterobacter sp. TBS_079 0.23 MPMX20_00976 Pyrroline-5-carboxylate reductase 0.49 MPMX20_03002 Histidinol dehydrogenase 0.90 10
Bosea sp. OAE506 0.21 ABIE41_RS11365 pyrroline-5-carboxylate reductase 0.31 ABIE41_RS24015 histidinol dehydrogenase — —
Erwinia tracheiphila SCR3 0.21 LU632_RS18995 proC pyrroline-5-carboxylate reductase 0.47 LU632_RS08945 hisD histidinol dehydrogenase low > 74
Dinoroseobacter shibae DFL-12 0.21 Dshi_2645 pyrroline-5-carboxylate reductase (RefSeq) 0.34 Dshi_0979 Histidinol dehydrogenase (RefSeq) — —
Mycobacterium tuberculosis H37Rv 0.20 Rv0500 Probable pyrroline-5-carboxylate reductase ProC (P5CR) (P5C reductase) 0.25 Rv1599 Probable histidinol dehydrogenase HisD (HDH) — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.20 Echvi_2635 pyrroline-5-carboxylate reductase 0.46 Echvi_2459 histidinol dehydrogenase 0.69 40
Desulfovibrio vulgaris Hildenborough JW710 0.20 DVU2332 proC pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) 0.33 DVU0796 hisD histidinol dehydrogenase (TIGR) 0.80 28
Caulobacter crescentus NA1000 Δfur 0.18 CCNA_00528 pyrroline-5-carboxylate reductase 0.29 CCNA_02431 histidinol dehydrogenase 0.57 31
Caulobacter crescentus NA1000 0.18 CCNA_00528 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) 0.29 CCNA_02431 histidinol dehydrogenase 0.95 9
Desulfovibrio vulgaris Miyazaki F 0.16 DvMF_3161 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) 0.33 DvMF_2814 hisD histidinol dehydrogenase (RefSeq) 0.91 20
Phocaeicola dorei CL03T12C01 0.16 ABI39_RS02960 pyrroline-5-carboxylate reductase 0.48 ABI39_RS11835 histidinol dehydrogenase 0.74 46
Pontibacter actiniarum KMM 6156, DSM 19842 0.15 CA264_07730 pyrroline-5-carboxylate reductase 0.46 CA264_05030 histidinol dehydrogenase low > 74
Phocaeicola vulgatus CL09T03C04 0.15 HMPREF1058_RS08830 pyrroline-5-carboxylate reductase 0.49 HMPREF1058_RS15875 histidinol dehydrogenase 0.94 7
Brevundimonas sp. GW460-12-10-14-LB2 0.15 A4249_RS09840 pyrroline-5-carboxylate reductase dimerization domain-containing protein 0.39 A4249_RS10695 histidinol dehydrogenase 0.97 16
Bacteroides ovatus ATCC 8483 0.15 BACOVA_03587 pyrroline-5-carboxylate reductase 0.47 BACOVA_01234 histidinol dehydrogenase 0.86 36
Bacteroides stercoris CC31F 0.15 HMPREF1181_RS03440 pyrroline-5-carboxylate reductase 0.47 HMPREF1181_RS04860 histidinol dehydrogenase 0.96 2
Mucilaginibacter yixingensis YX-36 DSM 26809 0.14 ABZR88_RS09865 pyrroline-5-carboxylate reductase 0.48 ABZR88_RS06880 histidinol dehydrogenase — —
Bacteroides thetaiotaomicron VPI-5482 0.13 BT3757 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) 0.47 BT0201 histidinol dehydrogenase (NCBI ptt file) 0.89 18
Bifidobacterium breve UCC2003 0.09 BBR_RS14625 pyrroline-5-carboxylate reductase 0.26 BBR_RS17055 histidinol dehydrogenase low > 34

Not shown: 1 genomes with orthologs for Xcc-8004.1710.1 only; 6 genomes with orthologs for Xcc-8004.2948.1 only