| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Xanthomonas campestris pv. campestris strain 8004 | 1.0 | Xcc-8004.1710.1 | | Pyrroline-5-carboxylate reductase (EC 1.5.1.2) | 1.0 | Xcc-8004.1964.1 | | Tryptophan synthase beta chain (EC 4.2.1.20) | 0.63 | 14 |
| Lysobacter sp. OAE881 | 0.59 | ABIE51_RS16065 | | pyrroline-5-carboxylate reductase | 0.86 | ABIE51_RS08260 | | tryptophan synthase subunit beta | low | > 62 |
| Dyella japonica UNC79MFTsu3.2 | 0.49 | ABZR86_RS10425 | | pyrroline-5-carboxylate reductase | 0.84 | ABZR86_RS08000 | | tryptophan synthase subunit beta | 0.84 | 69 |
| Rhodanobacter sp. FW510-T8 | 0.47 | OKGIIK_11135 | proC | pyrroline-5-carboxylate reductase | 0.84 | OKGIIK_04845 | trpB | tryptophan synthase subunit beta | low | > 52 |
| Pseudomonas sp. S08-1 | 0.46 | OH686_10980 | | pyrroline-5-carboxylate reductase | 0.66 | OH686_12425 | | tryptophan synthase, beta subunit | 0.71 | 11 |
| Rhodanobacter denitrificans MT42 | 0.45 | LRK55_RS04030 | | pyrroline-5-carboxylate reductase | 0.85 | LRK55_RS01465 | | tryptophan synthase subunit beta | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.45 | LRK54_RS04260 | | pyrroline-5-carboxylate reductase | 0.85 | LRK54_RS01685 | | tryptophan synthase subunit beta | low | > 59 |
| Pseudomonas stutzeri RCH2 | 0.44 | Psest_0283 | | pyrroline-5-carboxylate reductase | 0.64 | Psest_0063 | | tryptophan synthase, beta subunit | — | — |
| Pseudomonas putida KT2440 | 0.43 | PP_5095 | | pyrroline-5-carboxylate reductase | 0.64 | PP_0083 | | tryptophan synthase beta chain | 0.42 | 39 |
| Pseudomonas fluorescens FW300-N2E2 | 0.43 | Pf6N2E2_4600 | | Pyrroline-5-carboxylate reductase (EC 1.5.1.2) | 0.65 | Pf6N2E2_4048 | | Tryptophan synthase beta chain (EC 4.2.1.20) | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.42 | AO356_13420 | | pyrroline-5-carboxylate reductase | 0.65 | AO356_10915 | | tryptophan synthase subunit beta | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.41 | Psyr_0476 | | pyrroline-5-carboxylate reductase | 0.64 | Psyr_0034 | | tryptophan synthase, beta chain | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.41 | Psyr_0476 | | pyrroline-5-carboxylate reductase | 0.64 | Psyr_0034 | | tryptophan synthase, beta chain | low | > 86 |
| Pseudomonas sp. RS175 | 0.41 | PFR28_04243 | | Pyrroline-5-carboxylate reductase | 0.65 | PFR28_04715 | | Tryptophan synthase beta chain | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.41 | Pf1N1B4_2341 | | Pyrroline-5-carboxylate reductase (EC 1.5.1.2) | 0.64 | Pf1N1B4_1831 | | Tryptophan synthase beta chain (EC 4.2.1.20) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.41 | AO353_08165 | | pyrroline-5-carboxylate reductase | 0.64 | AO353_10710 | | tryptophan synthase subunit beta | 0.66 | 22 |
| Pseudomonas fluorescens SBW25-INTG | 0.41 | PFLU_RS28375 | | pyrroline-5-carboxylate reductase | 0.65 | PFLU_RS00180 | | tryptophan synthase subunit beta | — | — |
| Pseudomonas fluorescens SBW25 | 0.41 | PFLU_RS28375 | | pyrroline-5-carboxylate reductase | 0.65 | PFLU_RS00180 | | tryptophan synthase subunit beta | — | — |
| Pseudomonas simiae WCS417 | 0.41 | PS417_26730 | | pyrroline-5-carboxylate reductase | 0.65 | PS417_00185 | | tryptophan synthase subunit beta | 0.52 | 35 |
| Pseudomonas fluorescens GW456-L13 | 0.40 | PfGW456L13_1010 | | Pyrroline-5-carboxylate reductase (EC 1.5.1.2) | 0.65 | PfGW456L13_566 | | Tryptophan synthase beta chain (EC 4.2.1.20) | 0.82 | 43 |
| Marinobacter adhaerens HP15 | 0.37 | HP15_287 | | pyrroline-5-carboxylate reductase | 0.66 | HP15_1827 | | tryptophan synthase, beta subunit | — | — |
| Dechlorosoma suillum PS | 0.36 | Dsui_0602 | | pyrroline-5-carboxylate reductase | 0.69 | Dsui_3192 | | tryptophan synthase, beta subunit | — | — |
| Variovorax sp. OAS795 | 0.35 | ABID97_RS01555 | | pyrroline-5-carboxylate reductase | 0.66 | ABID97_RS08430 | | tryptophan synthase subunit beta | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.35 | QEN71_RS26600 | | pyrroline-5-carboxylate reductase | 0.70 | QEN71_RS17645 | | tryptophan synthase subunit beta | 0.84 | 47 |
| Kangiella aquimarina DSM 16071 | 0.35 | B158DRAFT_0197 | | pyrroline-5-carboxylate reductase | 0.51 | B158DRAFT_2429 | | tryptophan synthase, beta subunit | low | > 40 |
| Ralstonia sp. UNC404CL21Col | 0.34 | ABZR87_RS01230 | | pyrroline-5-carboxylate reductase | 0.68 | ABZR87_RS14500 | | tryptophan synthase subunit beta | — | — |
| Acidovorax sp. GW101-3H11 | 0.34 | Ac3H11_788 | | Pyrroline-5-carboxylate reductase (EC 1.5.1.2) | 0.64 | Ac3H11_1534 | | Tryptophan synthase beta chain (EC 4.2.1.20) | — | — |
| Acinetobacter radioresistens SK82 | 0.34 | MPMX26_00572 | | Pyrroline-5-carboxylate reductase | 0.67 | MPMX26_02617 | | Tryptophan synthase beta chain | 0.73 | 11 |
| Ralstonia solanacearum GMI1000 | 0.34 | RS_RS13440 | | pyrroline-5-carboxylate reductase | 0.69 | RS_RS09965 | | tryptophan synthase subunit beta | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.33 | GFF2806 | | Pyrroline-5-carboxylate reductase (EC 1.5.1.2) | 0.67 | GFF3355 | | Tryptophan synthase beta chain (EC 4.2.1.20) | low | > 90 |
| Paraburkholderia graminis OAS925 | 0.33 | ABIE53_000840 | | pyrroline-5-carboxylate reductase | 0.69 | ABIE53_004809 | | tryptophan synthase beta chain | — | — |
| Variovorax sp. SCN45 | 0.33 | GFF5553 | | Pyrroline-5-carboxylate reductase (EC 1.5.1.2) | 0.66 | GFF3883 | | Tryptophan synthase beta chain (EC 4.2.1.20) | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.33 | RALBFv3_RS05580 | | pyrroline-5-carboxylate reductase | 0.69 | RALBFv3_RS02585 | | tryptophan synthase subunit beta | — | — |
| Ralstonia solanacearum UW163 | 0.33 | UW163_RS08045 | | pyrroline-5-carboxylate reductase | 0.69 | UW163_RS11140 | | tryptophan synthase subunit beta | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.33 | H281DRAFT_04679 | | pyrroline-5-carboxylate reductase | 0.69 | H281DRAFT_06067 | | tryptophan synthase, beta chain | 0.58 | 25 |
| Ralstonia solanacearum PSI07 | 0.33 | RPSI07_RS11720 | | pyrroline-5-carboxylate reductase | 0.69 | RPSI07_RS14730 | | tryptophan synthase subunit beta | 0.66 | 21 |
| Dickeya dadantii 3937 | 0.32 | DDA3937_RS17305 | | pyrroline-5-carboxylate reductase | 0.51 | DDA3937_RS10465 | | tryptophan synthase subunit beta | 0.65 | 47 |
| Burkholderia phytofirmans PsJN | 0.32 | BPHYT_RS03490 | | pyrroline-5-carboxylate reductase | 0.71 | BPHYT_RS33875 | | tryptophan synthase subunit alpha | — | — |
| Shewanella sp. ANA-3 | 0.32 | Shewana3_1193 | | pyrroline-5-carboxylate reductase (RefSeq) | 0.51 | Shewana3_1516 | | tryptophan synthase subunit beta (RefSeq) | 0.94 | 12 |
| Serratia liquefaciens MT49 | 0.32 | IAI46_21415 | | pyrroline-5-carboxylate reductase | 0.52 | IAI46_14040 | | tryptophan synthase subunit beta | low | > 86 |
| Shewanella oneidensis MR-1 | 0.32 | SO3354 | proC | pyrroline-5-carboxylate reductase (NCBI ptt file) | 0.51 | SO3023 | trpB | tryptophan synthase, beta subunit (NCBI ptt file) | 0.94 | 38 |
| Cupriavidus basilensis FW507-4G11 | 0.32 | RR42_RS17360 | | pyrroline-5-carboxylate reductase | 0.69 | RR42_RS14360 | | tryptophan synthase subunit alpha | — | — |
| Dickeya dianthicola ME23 | 0.32 | DZA65_RS18440 | | pyrroline-5-carboxylate reductase | 0.51 | DZA65_RS10945 | | tryptophan synthase subunit beta | — | — |
| Dickeya dianthicola 67-19 | 0.32 | HGI48_RS17350 | | pyrroline-5-carboxylate reductase | 0.51 | HGI48_RS10465 | | tryptophan synthase subunit beta | — | — |
| Shewanella loihica PV-4 | 0.30 | Shew_3016 | | pyrroline-5-carboxylate reductase (RefSeq) | 0.53 | Shew_2255 | | tryptophan synthase subunit beta (RefSeq) | low | > 60 |
| Rahnella sp. WP5 | 0.30 | EX31_RS02690 | | pyrroline-5-carboxylate reductase | 0.50 | EX31_RS09975 | | tryptophan synthase subunit beta | 0.96 | 20 |
| Herbaspirillum seropedicae SmR1 | 0.30 | HSERO_RS18990 | | pyrroline-5-carboxylate reductase | 0.65 | HSERO_RS16475 | | tryptophan synthase subunit alpha | 0.56 | 47 |
| Alteromonas macleodii MIT1002 | 0.30 | MIT1002_03062 | | Pyrroline-5-carboxylate reductase | 0.51 | MIT1002_01426 | | Tryptophan synthase beta chain | — | — |
| Shewanella amazonensis SB2B | 0.30 | Sama_2478 | | pyrroline-5-carboxylate reductase (RefSeq) | 0.52 | Sama_2133 | | tryptophan synthase subunit beta (RefSeq) | 0.89 | 53 |
| Vibrio cholerae E7946 ATCC 55056 | 0.30 | CSW01_02450 | | pyrroline-5-carboxylate reductase | 0.50 | CSW01_05930 | | tryptophan synthase subunit beta | low | > 62 |
| Pectobacterium carotovorum WPP14 | 0.30 | HER17_RS03805 | | pyrroline-5-carboxylate reductase | 0.51 | HER17_RS10935 | | tryptophan synthase subunit beta | — | — |
| Castellaniella sp019104865 MT123 | 0.29 | ABCV34_RS03610 | | pyrroline-5-carboxylate reductase | 0.66 | ABCV34_RS08435 | | tryptophan synthase subunit beta | — | — |
| Magnetospirillum magneticum AMB-1 | 0.28 | AMB_RS02820 | | pyrroline-5-carboxylate reductase | 0.63 | AMB_RS20295 | | tryptophan synthase subunit beta | — | — |
| Azospirillum sp. SherDot2 | 0.28 | MPMX19_01399 | | Pyrroline-5-carboxylate reductase | 0.65 | MPMX19_02736 | | Tryptophan synthase beta chain | — | — |
| Azospirillum brasilense Sp245 | 0.27 | AZOBR_RS06245 | | pyrroline-5-carboxylate reductase | 0.64 | AZOBR_RS00525 | | tryptophan synthase subunit beta | — | — |
| Rhodospirillum rubrum S1H | 0.27 | Rru_A3281 | | Delta 1-pyrroline-5-carboxylate reductase (NCBI) | 0.63 | Rru_A3427 | | Tryptophan synthase, beta chain (NCBI) | — | — |
| Agrobacterium fabrum C58 | 0.27 | Atu2209 | | pyrroline-5-carboxylate reductase | 0.65 | Atu0018 | | tryptophan synthase beta subunit | — | — |
| Phaeobacter inhibens DSM 17395 | 0.26 | PGA1_c24700 | | pyrroline-5-carboxylate reductase ProC | 0.62 | PGA1_c04870 | | tryptophan synthase beta chain | — | — |
| Synechococcus elongatus PCC 7942 | 0.26 | Synpcc7942_2058 | proC | pyrroline-5-carboxylate reductase | 0.58 | Synpcc7942_2143 | trpB | tryptophan synthase subunit beta | — | — |
| Rhodopseudomonas palustris CGA009 | 0.25 | TX73_022630 | | pyrroline-5-carboxylate reductase | 0.64 | TX73_000360 | | tryptophan synthase subunit beta | — | — |
| Rhizobium sp. OAE497 | 0.25 | ABIE40_RS13005 | | pyrroline-5-carboxylate reductase | 0.64 | ABIE40_RS19335 | | tryptophan synthase subunit beta | — | — |
| Escherichia fergusonii Becca | 0.24 | EFB2_03670 | | Pyrroline-5-carboxylate reductase | 0.52 | EFB2_02665 | | Tryptophan synthase beta chain | low | > 86 |
| Klebsiella michiganensis M5al | 0.24 | BWI76_RS06170 | | pyrroline-5-carboxylate reductase | 0.52 | BWI76_RS11845 | | tryptophan synthase subunit beta | — | — |
| Escherichia coli ECRC99 | 0.24 | KEDOAH_19355 | proC | pyrroline-5-carboxylate reductase | 0.52 | KEDOAH_26080 | trpB | tryptophan synthase subunit beta | — | — |
| Escherichia coli ECRC102 | 0.24 | NIAGMN_06665 | proC | pyrroline-5-carboxylate reductase | 0.52 | NIAGMN_26840 | trpB | tryptophan synthase subunit beta | — | — |
| Escherichia coli ECOR38 | 0.24 | HEPCGN_07250 | proC | pyrroline-5-carboxylate reductase | 0.52 | HEPCGN_25520 | trpB | tryptophan synthase subunit beta | 0.73 | 75 |
| Escherichia coli ECRC100 | 0.24 | OKFHMN_08610 | proC | pyrroline-5-carboxylate reductase | 0.52 | OKFHMN_02670 | trpB | tryptophan synthase subunit beta | low | > 80 |
| Escherichia coli ECRC98 | 0.24 | JDDGAC_12265 | proC | pyrroline-5-carboxylate reductase | 0.52 | JDDGAC_05215 | trpB | tryptophan synthase subunit beta | 0.67 | 84 |
| Escherichia coli Nissle 1917 | 0.24 | ECOLIN_RS02345 | | pyrroline-5-carboxylate reductase | 0.52 | ECOLIN_RS07600 | | tryptophan synthase subunit beta | 0.81 | 27 |
| Escherichia coli ECRC101 | 0.24 | MCAODC_27835 | proC | pyrroline-5-carboxylate reductase | 0.52 | MCAODC_15595 | trpB | tryptophan synthase subunit beta | 0.75 | 45 |
| Escherichia coli ECRC62 | 0.24 | BNILDI_22950 | proC | pyrroline-5-carboxylate reductase | 0.52 | BNILDI_18475 | trpB | tryptophan synthase subunit beta | low | > 75 |
| Escherichia coli BL21 | 0.24 | ECD_00333 | | pyrroline-5-carboxylate reductase, NAD(P)-binding | 0.52 | ECD_01235 | | tryptophan synthase, beta subunit | 0.61 | 61 |
| Escherichia coli ECOR27 | 0.24 | NOLOHH_01535 | proC | pyrroline-5-carboxylate reductase | 0.52 | NOLOHH_20330 | trpB | tryptophan synthase subunit beta | 0.84 | 52 |
| Escherichia coli BW25113 | 0.24 | b0386 | proC | pyrroline-5-carboxylate reductase (NCBI) | 0.52 | b1261 | trpB | tryptophan synthase subunit beta (NCBI) | 0.81 | 47 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.24 | OHPLBJKB_03288 | | Pyrroline-5-carboxylate reductase | 0.52 | OHPLBJKB_02422 | | Tryptophan synthase beta chain | low | > 73 |
| Pantoea sp. MT58 | 0.24 | IAI47_14945 | | pyrroline-5-carboxylate reductase | 0.51 | IAI47_09170 | | tryptophan synthase subunit beta | 0.80 | 45 |
| Enterobacter asburiae PDN3 | 0.23 | EX28DRAFT_2585 | | pyrroline-5-carboxylate reductase | 0.53 | EX28DRAFT_0933 | | tryptophan synthase, beta subunit | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.23 | GFF4283 | | Pyrroline-5-carboxylate reductase (EC 1.5.1.2) | 0.51 | GFF2725 | | Tryptophan synthase beta chain (EC 4.2.1.20) | low | > 78 |
| Enterobacter sp. TBS_079 | 0.23 | MPMX20_00976 | | Pyrroline-5-carboxylate reductase | 0.52 | MPMX20_02513 | | Tryptophan synthase beta chain | 0.84 | 48 |
| Bosea sp. OAE506 | 0.21 | ABIE41_RS11365 | | pyrroline-5-carboxylate reductase | 0.64 | ABIE41_RS04270 | | tryptophan synthase subunit beta | — | — |
| Dinoroseobacter shibae DFL-12 | 0.21 | Dshi_2645 | | pyrroline-5-carboxylate reductase (RefSeq) | 0.63 | Dshi_1031 | | tryptophan synthase, beta subunit (RefSeq) | — | — |
| Erwinia tracheiphila SCR3 | 0.21 | LU632_RS18995 | proC | pyrroline-5-carboxylate reductase | 0.52 | LU632_RS12770 | trpB | tryptophan synthase subunit beta | low | > 74 |
| Mycobacterium tuberculosis H37Rv | 0.20 | Rv0500 | | Probable pyrroline-5-carboxylate reductase ProC (P5CR) (P5C reductase) | 0.61 | Rv1612 | | Tryptophan synthase, beta subunit TrpB | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.20 | Echvi_2635 | | pyrroline-5-carboxylate reductase | 0.52 | Echvi_2510 | | tryptophan synthase, beta subunit | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.20 | DVU2332 | proC | pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) | 0.55 | DVU0085 | trpB-1 | tryptophan synthase, beta subunit (TIGR) | low | > 55 |
| Caulobacter crescentus NA1000 | 0.18 | CCNA_00528 | | pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) | 0.63 | CCNA_03658 | | tryptophan synthase beta chain | 0.80 | 66 |
| Caulobacter crescentus NA1000 Δfur | 0.18 | CCNA_00528 | | pyrroline-5-carboxylate reductase | 0.63 | CCNA_03658 | | tryptophan synthase beta chain | low | > 67 |
| Desulfovibrio vulgaris Miyazaki F | 0.16 | DvMF_3161 | | pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) | 0.55 | DvMF_2237 | | tryptophan synthase subunit beta (RefSeq) | low | > 51 |
| Phocaeicola dorei CL03T12C01 | 0.16 | ABI39_RS02960 | | pyrroline-5-carboxylate reductase | 0.49 | ABI39_RS21045 | | tryptophan synthase subunit beta | 0.80 | 26 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.15 | CA264_07730 | | pyrroline-5-carboxylate reductase | 0.52 | CA264_05080 | | tryptophan synthase subunit beta | low | > 74 |
| Phocaeicola vulgatus CL09T03C04 | 0.15 | HMPREF1058_RS08830 | | pyrroline-5-carboxylate reductase | 0.49 | HMPREF1058_RS07170 | | tryptophan synthase subunit beta | 0.94 | 12 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.15 | A4249_RS09840 | | pyrroline-5-carboxylate reductase dimerization domain-containing protein | 0.63 | A4249_RS11330 | | tryptophan synthase subunit beta | — | — |
| Bacteroides ovatus ATCC 8483 | 0.15 | BACOVA_03587 | | pyrroline-5-carboxylate reductase | 0.49 | BACOVA_03779 | | tryptophan synthase, beta subunit | 0.87 | 35 |
| Bacteroides stercoris CC31F | 0.15 | HMPREF1181_RS03440 | | pyrroline-5-carboxylate reductase | 0.51 | HMPREF1181_RS15320 | | tryptophan synthase subunit beta | 0.85 | 44 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.14 | ABZR88_RS09865 | | pyrroline-5-carboxylate reductase | 0.54 | ABZR88_RS10665 | | tryptophan synthase subunit beta | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.13 | BT3757 | | pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) | 0.50 | BT0533 | | tryptophan synthase beta chain (NCBI ptt file) | 0.82 | 39 |
Not shown: 1 genomes with orthologs for Xcc-8004.1710.1 only; 6 genomes with orthologs for Xcc-8004.1964.1 only