Conservation of cofitness between Xcc-8004.1710.1 and Xcc-8004.1955.1 in Xanthomonas campestris pv. campestris strain 8004

95 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.1710.1 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 1.0 Xcc-8004.1955.1 Chorismate synthase (EC 4.2.3.5) 0.71 3
Lysobacter sp. OAE881 0.59 ABIE51_RS16065 pyrroline-5-carboxylate reductase 0.81 ABIE51_RS08220 chorismate synthase — —
Dyella japonica UNC79MFTsu3.2 0.49 ABZR86_RS10425 pyrroline-5-carboxylate reductase 0.82 ABZR86_RS08040 chorismate synthase 0.85 65
Rhodanobacter sp. FW510-T8 0.47 OKGIIK_11135 proC pyrroline-5-carboxylate reductase 0.78 OKGIIK_04805 aroC chorismate synthase low > 52
Pseudomonas sp. S08-1 0.46 OH686_10980 pyrroline-5-carboxylate reductase 0.62 OH686_00675 chorismate synthase — —
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS04260 pyrroline-5-carboxylate reductase 0.77 LRK54_RS01725 chorismate synthase — —
Rhodanobacter denitrificans MT42 0.45 LRK55_RS04030 pyrroline-5-carboxylate reductase 0.77 LRK55_RS01505 chorismate synthase — —
Pseudomonas stutzeri RCH2 0.44 Psest_0283 pyrroline-5-carboxylate reductase 0.64 Psest_1903 chorismate synthase — —
Pseudomonas putida KT2440 0.43 PP_5095 pyrroline-5-carboxylate reductase 0.64 PP_1830 Chorismate synthase — —
Pseudomonas fluorescens FW300-N2E2 0.43 Pf6N2E2_4600 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.63 Pf6N2E2_5822 Chorismate synthase (EC 4.2.3.5) — —
Pseudomonas fluorescens FW300-N2C3 0.42 AO356_13420 pyrroline-5-carboxylate reductase 0.63 AO356_19540 chorismate synthase — —
Pseudomonas sp. RS175 0.41 PFR28_04243 Pyrroline-5-carboxylate reductase 0.62 PFR28_03126 Chorismate synthase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.41 Psyr_0476 pyrroline-5-carboxylate reductase 0.63 Psyr_1853 chorismate synthase — —
Pseudomonas syringae pv. syringae B728a 0.41 Psyr_0476 pyrroline-5-carboxylate reductase 0.63 Psyr_1853 chorismate synthase — —
Pseudomonas fluorescens FW300-N1B4 0.41 Pf1N1B4_2341 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.63 Pf1N1B4_3780 Chorismate synthase (EC 4.2.3.5) — —
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_08165 pyrroline-5-carboxylate reductase 0.63 AO353_02250 chorismate synthase 0.50 68
Pseudomonas fluorescens SBW25 0.41 PFLU_RS28375 pyrroline-5-carboxylate reductase 0.62 PFLU_RS21280 chorismate synthase — —
Pseudomonas fluorescens SBW25-INTG 0.41 PFLU_RS28375 pyrroline-5-carboxylate reductase 0.62 PFLU_RS21280 chorismate synthase — —
Pseudomonas simiae WCS417 0.41 PS417_26730 pyrroline-5-carboxylate reductase 0.62 PS417_19315 chorismate synthase — —
Pseudomonas fluorescens GW456-L13 0.40 PfGW456L13_1010 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.63 PfGW456L13_4165 Chorismate synthase (EC 4.2.3.5) 0.68 66
Marinobacter adhaerens HP15 0.37 HP15_287 pyrroline-5-carboxylate reductase 0.72 HP15_1838 chorismate synthase — —
Dechlorosoma suillum PS 0.36 Dsui_0602 pyrroline-5-carboxylate reductase 0.69 Dsui_3204 chorismate synthase — —
Variovorax sp. OAS795 0.35 ABID97_RS01555 pyrroline-5-carboxylate reductase 0.60 ABID97_RS19805 chorismate synthase — —
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS26600 pyrroline-5-carboxylate reductase 0.67 QEN71_RS05215 chorismate synthase 0.86 40
Kangiella aquimarina DSM 16071 0.35 B158DRAFT_0197 pyrroline-5-carboxylate reductase 0.41 B158DRAFT_2433 chorismate synthase (EC 4.2.3.5) low > 40
Ralstonia sp. UNC404CL21Col 0.34 ABZR87_RS01230 pyrroline-5-carboxylate reductase 0.68 ABZR87_RS13790 chorismate synthase — —
Acidovorax sp. GW101-3H11 0.34 Ac3H11_788 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.63 Ac3H11_2925 Chorismate synthase (EC 4.2.3.5) — —
Acinetobacter radioresistens SK82 0.34 MPMX26_00572 Pyrroline-5-carboxylate reductase 0.57 MPMX26_01340 Chorismate synthase — —
Ralstonia solanacearum GMI1000 0.34 RS_RS13440 pyrroline-5-carboxylate reductase 0.65 RS_RS07885 chorismate synthase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.33 GFF2806 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.63 GFF5239 Chorismate synthase (EC 4.2.3.5) low > 90
Paraburkholderia graminis OAS925 0.33 ABIE53_000840 pyrroline-5-carboxylate reductase 0.66 ABIE53_002916 chorismate synthase — —
Variovorax sp. SCN45 0.33 GFF5553 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.60 GFF2627 Chorismate synthase (EC 4.2.3.5) — —
Ralstonia solanacearum UW163 0.33 UW163_RS08045 pyrroline-5-carboxylate reductase 0.66 UW163_RS15160 chorismate synthase — —
Ralstonia solanacearum IBSBF1503 0.33 RALBFv3_RS05580 pyrroline-5-carboxylate reductase 0.66 RALBFv3_RS01850 chorismate synthase — —
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_04679 pyrroline-5-carboxylate reductase 0.65 H281DRAFT_04489 chorismate synthase — —
Ralstonia solanacearum PSI07 0.33 RPSI07_RS11720 pyrroline-5-carboxylate reductase 0.66 RPSI07_RS15640 chorismate synthase — —
Dickeya dadantii 3937 0.32 DDA3937_RS17305 pyrroline-5-carboxylate reductase 0.61 DDA3937_RS14580 chorismate synthase — —
Burkholderia phytofirmans PsJN 0.32 BPHYT_RS03490 pyrroline-5-carboxylate reductase 0.66 BPHYT_RS13705 chorismate synthase — —
Serratia liquefaciens MT49 0.32 IAI46_21415 pyrroline-5-carboxylate reductase 0.60 IAI46_18025 chorismate synthase 0.50 85
Shewanella sp. ANA-3 0.32 Shewana3_1193 pyrroline-5-carboxylate reductase (RefSeq) 0.62 Shewana3_1469 chorismate synthase (RefSeq) 0.91 39
Cupriavidus basilensis FW507-4G11 0.32 RR42_RS17360 pyrroline-5-carboxylate reductase 0.65 RR42_RS06485 chorismate synthase — —
Dickeya dianthicola ME23 0.32 DZA65_RS18440 pyrroline-5-carboxylate reductase 0.62 DZA65_RS15465 chorismate synthase — —
Dickeya dianthicola 67-19 0.32 HGI48_RS17350 pyrroline-5-carboxylate reductase 0.62 HGI48_RS14530 chorismate synthase — —
Shewanella loihica PV-4 0.30 Shew_3016 pyrroline-5-carboxylate reductase (RefSeq) 0.63 Shew_2416 chorismate synthase (RefSeq) low > 60
Rahnella sp. WP5 0.30 EX31_RS02690 pyrroline-5-carboxylate reductase 0.61 EX31_RS19685 chorismate synthase — —
Herbaspirillum seropedicae SmR1 0.30 HSERO_RS18990 pyrroline-5-carboxylate reductase 0.65 HSERO_RS16525 chorismate synthase — —
Shewanella amazonensis SB2B 0.30 Sama_2478 pyrroline-5-carboxylate reductase (RefSeq) 0.65 Sama_2159 chorismate synthase (RefSeq) — —
Alteromonas macleodii MIT1002 0.30 MIT1002_03062 Pyrroline-5-carboxylate reductase 0.65 MIT1002_01229 Chorismate synthase — —
Pectobacterium carotovorum WPP14 0.30 HER17_RS03805 pyrroline-5-carboxylate reductase 0.61 HER17_RS06935 chorismate synthase — —
Vibrio cholerae E7946 ATCC 55056 0.30 CSW01_02450 pyrroline-5-carboxylate reductase 0.60 CSW01_10560 chorismate synthase low > 62
Castellaniella sp019104865 MT123 0.29 ABCV34_RS03610 pyrroline-5-carboxylate reductase 0.61 ABCV34_RS04300 chorismate synthase — —
Magnetospirillum magneticum AMB-1 0.28 AMB_RS02820 pyrroline-5-carboxylate reductase 0.53 AMB_RS08025 chorismate synthase — —
Azospirillum sp. SherDot2 0.28 MPMX19_01399 Pyrroline-5-carboxylate reductase 0.53 MPMX19_01810 Chorismate synthase — —
Agrobacterium fabrum C58 0.27 Atu2209 pyrroline-5-carboxylate reductase 0.48 Atu0754 chorismate synthase — —
Azospirillum brasilense Sp245 0.27 AZOBR_RS06245 pyrroline-5-carboxylate reductase 0.54 AZOBR_RS10730 chorismate synthase — —
Rhodospirillum rubrum S1H 0.27 Rru_A3281 Delta 1-pyrroline-5-carboxylate reductase (NCBI) 0.55 Rru_A2623 Chorismate synthase (NCBI) — —
Phaeobacter inhibens DSM 17395 0.26 PGA1_c24700 pyrroline-5-carboxylate reductase ProC 0.52 PGA1_c34060 chorismate synthase AroC — —
Synechococcus elongatus PCC 7942 0.26 Synpcc7942_2058 proC pyrroline-5-carboxylate reductase 0.42 Synpcc7942_0212 aroC chorismate synthase — —
Rhodopseudomonas palustris CGA009 0.25 TX73_022630 pyrroline-5-carboxylate reductase 0.54 TX73_006170 chorismate synthase — —
Rhizobium sp. OAE497 0.25 ABIE40_RS13005 pyrroline-5-carboxylate reductase 0.49 ABIE40_RS03980 chorismate synthase — —
Klebsiella michiganensis M5al 0.24 BWI76_RS06170 pyrroline-5-carboxylate reductase 0.58 BWI76_RS20435 chorismate synthase — —
Escherichia fergusonii Becca 0.24 EFB2_03670 Pyrroline-5-carboxylate reductase 0.58 EFB2_01529 Chorismate synthase low > 86
Escherichia coli ECRC100 0.24 OKFHMN_08610 proC pyrroline-5-carboxylate reductase 0.58 OKFHMN_22615 aroC chorismate synthase 0.86 36
Escherichia coli ECRC101 0.24 MCAODC_27835 proC pyrroline-5-carboxylate reductase 0.58 MCAODC_13655 aroC chorismate synthase 0.66 69
Escherichia coli Nissle 1917 0.24 ECOLIN_RS02345 pyrroline-5-carboxylate reductase 0.58 ECOLIN_RS13490 chorismate synthase — —
Escherichia coli ECRC102 0.24 NIAGMN_06665 proC pyrroline-5-carboxylate reductase 0.58 NIAGMN_20390 aroC chorismate synthase — —
Escherichia coli ECRC98 0.24 JDDGAC_12265 proC pyrroline-5-carboxylate reductase 0.58 JDDGAC_26575 aroC chorismate synthase 0.69 54
Escherichia coli ECRC99 0.24 KEDOAH_19355 proC pyrroline-5-carboxylate reductase 0.58 KEDOAH_05580 aroC chorismate synthase — —
Escherichia coli ECOR38 0.24 HEPCGN_07250 proC pyrroline-5-carboxylate reductase 0.58 HEPCGN_21820 aroC chorismate synthase 0.91 2
Escherichia coli ECOR27 0.24 NOLOHH_01535 proC pyrroline-5-carboxylate reductase 0.58 NOLOHH_14250 aroC chorismate synthase 0.89 21
Escherichia coli BW25113 0.24 b0386 proC pyrroline-5-carboxylate reductase (NCBI) 0.58 b2329 aroC chorismate synthase (NCBI) 0.84 25
Escherichia coli ECRC62 0.24 BNILDI_22950 proC pyrroline-5-carboxylate reductase 0.58 BNILDI_13170 aroC chorismate synthase 0.68 73
Escherichia coli BL21 0.24 ECD_00333 pyrroline-5-carboxylate reductase, NAD(P)-binding 0.58 ECD_02254 chorismate synthase 0.68 52
Escherichia coli HS(pFamp)R (ATCC 700891) 0.24 OHPLBJKB_03288 Pyrroline-5-carboxylate reductase 0.58 OHPLBJKB_01376 Chorismate synthase low > 73
Pantoea sp. MT58 0.24 IAI47_14945 pyrroline-5-carboxylate reductase 0.60 IAI47_06150 chorismate synthase — —
Enterobacter asburiae PDN3 0.23 EX28DRAFT_2585 pyrroline-5-carboxylate reductase 0.60 EX28DRAFT_0275 chorismate synthase (EC 4.2.3.5) — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.23 GFF4283 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.58 GFF1950 Chorismate synthase (EC 4.2.3.5) low > 78
Enterobacter sp. TBS_079 0.23 MPMX20_00976 Pyrroline-5-carboxylate reductase 0.60 MPMX20_03264 Chorismate synthase 0.83 50
Bosea sp. OAE506 0.21 ABIE41_RS11365 pyrroline-5-carboxylate reductase 0.53 ABIE41_RS10190 chorismate synthase — —
Erwinia tracheiphila SCR3 0.21 LU632_RS18995 proC pyrroline-5-carboxylate reductase 0.62 LU632_RS07775 aroC chorismate synthase 0.60 33
Dinoroseobacter shibae DFL-12 0.21 Dshi_2645 pyrroline-5-carboxylate reductase (RefSeq) 0.50 Dshi_3275 Chorismate synthase (RefSeq) — —
Mycobacterium tuberculosis H37Rv 0.20 Rv0500 Probable pyrroline-5-carboxylate reductase ProC (P5CR) (P5C reductase) 0.23 Rv2540c Probable chorismate synthase AroF (5-enolpyruvylshikimate-3-phosphate phospholyase) — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.20 Echvi_2635 pyrroline-5-carboxylate reductase 0.42 Echvi_1518 chorismate synthase — —
Desulfovibrio vulgaris Hildenborough JW710 0.20 DVU2332 proC pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) 0.41 DVU0894 aroC chorismate synthase (TIGR) — —
Caulobacter crescentus NA1000 Δfur 0.18 CCNA_00528 pyrroline-5-carboxylate reductase 0.47 CCNA_03256 chorismate synthase low > 67
Caulobacter crescentus NA1000 0.18 CCNA_00528 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) 0.47 CCNA_03256 chorismate synthase low > 66
Desulfovibrio vulgaris Miyazaki F 0.16 DvMF_3161 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) 0.40 DvMF_1408 chorismate synthase (RefSeq) — —
Phocaeicola dorei CL03T12C01 0.16 ABI39_RS02960 pyrroline-5-carboxylate reductase 0.40 ABI39_RS12645 chorismate synthase 0.85 8
Pontibacter actiniarum KMM 6156, DSM 19842 0.15 CA264_07730 pyrroline-5-carboxylate reductase 0.40 CA264_19835 chorismate synthase — —
Phocaeicola vulgatus CL09T03C04 0.15 HMPREF1058_RS08830 pyrroline-5-carboxylate reductase 0.40 HMPREF1058_RS16730 chorismate synthase low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.15 A4249_RS09840 pyrroline-5-carboxylate reductase dimerization domain-containing protein 0.49 A4249_RS08790 chorismate synthase — —
Bacteroides ovatus ATCC 8483 0.15 BACOVA_03587 pyrroline-5-carboxylate reductase 0.40 BACOVA_03296 chorismate synthase low > 94
Bacteroides stercoris CC31F 0.15 HMPREF1181_RS03440 pyrroline-5-carboxylate reductase 0.42 HMPREF1181_RS08365 chorismate synthase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.14 ABZR88_RS09865 pyrroline-5-carboxylate reductase 0.40 ABZR88_RS06995 chorismate synthase — —
Bacteroides thetaiotaomicron VPI-5482 0.13 BT3757 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) 0.40 BT2084 chorismate synthase (NCBI ptt file) — —
Bifidobacterium breve UCC2003 0.09 BBR_RS14625 pyrroline-5-carboxylate reductase 0.23 BBR_RS15080 chorismate synthase low > 34

Not shown: 1 genomes with orthologs for Xcc-8004.1710.1 only; 7 genomes with orthologs for Xcc-8004.1955.1 only