Conservation of cofitness between Xcc-8004.5020.1 and Xcc-8004.1053.1 in Xanthomonas campestris pv. campestris strain 8004

91 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 1.0 Xcc-8004.1053.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.91 5
Lysobacter sp. OAE881 0.57 ABIE51_RS01815 shikimate dehydrogenase 0.44 ABIE51_RS17585 3-isopropylmalate dehydrogenase 0.67 44
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS14985 shikimate dehydrogenase 0.39 ABZR86_RS15950 3-isopropylmalate dehydrogenase 0.96 24
Rhodanobacter denitrificans FW104-10B01 0.49 LRK54_RS08595 shikimate dehydrogenase 0.41 LRK54_RS10325 3-isopropylmalate dehydrogenase low > 59
Rhodanobacter denitrificans MT42 0.49 LRK55_RS08360 shikimate dehydrogenase 0.42 LRK55_RS09965 3-isopropylmalate dehydrogenase low > 63
Rhodanobacter sp. FW510-T8 0.46 OKGIIK_15365 aroE shikimate dehydrogenase 0.41 OKGIIK_13595 leuB 3-isopropylmalate dehydrogenase low > 52
Shewanella oneidensis MR-1 0.40 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) 0.47 SO4235 leuB 3-isopropylmalate dehydrogenase (NCBI ptt file) 0.88 23
Pseudomonas fluorescens SBW25 0.39 PFLU_RS00120 shikimate dehydrogenase 0.79 PFLU_RS20565 3-isopropylmalate dehydrogenase — —
Pseudomonas fluorescens SBW25-INTG 0.39 PFLU_RS00120 shikimate dehydrogenase 0.79 PFLU_RS20565 3-isopropylmalate dehydrogenase — —
Pseudomonas simiae WCS417 0.39 PS417_00125 shikimate dehydrogenase 0.79 PS417_18585 3-isopropylmalate dehydrogenase — —
Pseudomonas sp. RS175 0.39 PFR28_04655 Shikimate dehydrogenase (NADP(+)) 0.78 PFR28_02821 3-isopropylmalate dehydrogenase — —
Serratia liquefaciens MT49 0.39 IAI46_23240 shikimate dehydrogenase 0.48 IAI46_03350 3-isopropylmalate dehydrogenase low > 86
Vibrio cholerae E7946 ATCC 55056 0.38 CSW01_00280 shikimate dehydrogenase 0.48 CSW01_12600 3-isopropylmalate dehydrogenase low > 62
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_10670 shikimate dehydrogenase 0.77 AO353_20635 3-isopropylmalate dehydrogenase 0.74 17
Shewanella loihica PV-4 0.38 Shew_3727 shikimate 5-dehydrogenase (RefSeq) 0.47 Shew_3471 3-isopropylmalate dehydrogenase (RefSeq) 0.80 24
Shewanella sp. ANA-3 0.38 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.47 Shewana3_3760 3-isopropylmalate dehydrogenase (RefSeq) 0.90 41
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_11315 shikimate dehydrogenase 0.79 AO356_21415 3-isopropylmalate dehydrogenase 0.45 61
Pseudomonas fluorescens FW300-N1B4 0.38 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.78 Pf1N1B4_12 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.51 43
Pseudomonas fluorescens GW456-L13 0.38 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.79 PfGW456L13_3945 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.77 30
Dechlorosoma suillum PS 0.38 Dsui_0443 shikimate 5-dehydrogenase 0.62 Dsui_3198 3-isopropylmalate dehydrogenase — —
Pseudomonas fluorescens FW300-N2E2 0.38 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.79 Pf6N2E2_66 3-isopropylmalate dehydrogenase (EC 1.1.1.85) — —
Pseudomonas syringae pv. syringae B728a 0.37 Psyr_0025 shikimate dehydrogenase 0.78 Psyr_1985 3-isopropylmalate dehydrogenase 0.69 8
Pseudomonas syringae pv. syringae B728a ΔmexB 0.37 Psyr_0025 shikimate dehydrogenase 0.78 Psyr_1985 3-isopropylmalate dehydrogenase 0.63 22
Rahnella sp. WP5 0.37 EX31_RS15950 shikimate dehydrogenase 0.48 EX31_RS03685 3-isopropylmalate dehydrogenase — —
Herbaspirillum seropedicae SmR1 0.37 HSERO_RS01990 shikimate 5-dehydrogenase 0.59 HSERO_RS16500 3-isopropylmalate dehydrogenase 0.75 13
Pseudomonas sp. S08-1 0.37 OH686_12485 Shikimate 5-dehydrogenase I alpha 0.81 OH686_04470 3-isopropylmalate dehydrogenase low > 80
Pseudomonas putida KT2440 0.37 PP_0074 shikimate 5-dehydrogenase 0.78 PP_1988 3-isopropylmalate dehydrogenase — —
Pantoea sp. MT58 0.37 IAI47_02315 shikimate dehydrogenase 0.45 IAI47_16005 3-isopropylmalate dehydrogenase — —
Dickeya dadantii 3937 0.36 DDA3937_RS19100 shikimate dehydrogenase 0.47 DDA3937_RS18120 3-isopropylmalate dehydrogenase — —
Klebsiella michiganensis M5al 0.36 BWI76_RS25645 shikimate dehydrogenase 0.48 BWI76_RS04675 3-isopropylmalate dehydrogenase 0.75 35
Shewanella amazonensis SB2B 0.36 Sama_0052 shikimate dehydrogenase (RefSeq) 0.47 Sama_0336 3-isopropylmalate dehydrogenase (RefSeq) 0.68 58
Ralstonia solanacearum PSI07 0.36 RPSI07_RS11300 shikimate dehydrogenase 0.58 RPSI07_RS14705 3-isopropylmalate dehydrogenase 0.61 54
Dickeya dianthicola 67-19 0.36 HGI48_RS19190 shikimate dehydrogenase 0.47 HGI48_RS18060 3-isopropylmalate dehydrogenase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.36 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) 0.47 OHPLBJKB_03584 3-isopropylmalate dehydrogenase low > 73
Escherichia coli BW25113 0.36 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.47 b0073 leuB 3-isopropylmalate dehydrogenase (VIMSS) 0.93 15
Paraburkholderia sabiae LMG 24235 0.36 QEN71_RS27130 shikimate dehydrogenase 0.57 QEN71_RS17620 3-isopropylmalate dehydrogenase 0.56 90
Escherichia coli BL21 0.36 ECD_03132 dehydroshikimate reductase, NAD(P)-binding 0.47 ECD_00075 3-isopropylmalate dehydrogenase, NAD(+)-dependent low > 61
Escherichia fergusonii Becca 0.36 EFB2_00542 Shikimate dehydrogenase (NADP(+)) 0.47 EFB2_03972 3-isopropylmalate dehydrogenase low > 86
Escherichia coli ECOR38 0.36 HEPCGN_16385 aroE shikimate dehydrogenase 0.47 HEPCGN_08700 leuB 3-isopropylmalate dehydrogenase 0.82 32
Paraburkholderia bryophila 376MFSha3.1 0.36 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) 0.58 H281DRAFT_06072 3-isopropylmalate dehydrogenase — —
Escherichia coli ECRC101 0.36 MCAODC_08085 aroE shikimate dehydrogenase 0.47 MCAODC_01235 leuB 3-isopropylmalate dehydrogenase 0.82 33
Escherichia coli ECRC99 0.36 KEDOAH_10585 aroE shikimate dehydrogenase 0.47 KEDOAH_17435 leuB 3-isopropylmalate dehydrogenase — —
Dickeya dianthicola ME23 0.36 DZA65_RS20315 shikimate dehydrogenase 0.47 DZA65_RS19205 3-isopropylmalate dehydrogenase — —
Ralstonia solanacearum UW163 0.36 UW163_RS07680 shikimate dehydrogenase 0.58 UW163_RS11115 3-isopropylmalate dehydrogenase — —
Escherichia coli ECRC100 0.36 OKFHMN_17565 aroE shikimate dehydrogenase 0.47 OKFHMN_10720 leuB 3-isopropylmalate dehydrogenase 0.95 22
Ralstonia solanacearum IBSBF1503 0.36 RALBFv3_RS05945 shikimate dehydrogenase 0.58 RALBFv3_RS02610 3-isopropylmalate dehydrogenase 0.42 59
Ralstonia sp. UNC404CL21Col 0.36 ABZR87_RS01605 shikimate dehydrogenase 0.58 ABZR87_RS14530 3-isopropylmalate dehydrogenase 0.64 13
Escherichia coli Nissle 1917 0.36 ECOLIN_RS18840 shikimate dehydrogenase 0.47 ECOLIN_RS00395 3-isopropylmalate dehydrogenase 0.77 23
Acinetobacter radioresistens SK82 0.36 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) 0.67 MPMX26_00348 3-isopropylmalate dehydrogenase low > 36
Escherichia coli ECRC102 0.36 NIAGMN_15325 aroE shikimate dehydrogenase 0.47 NIAGMN_08570 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli ECRC98 0.36 JDDGAC_21185 aroE shikimate dehydrogenase 0.47 JDDGAC_14315 leuB 3-isopropylmalate dehydrogenase 0.78 60
Enterobacter asburiae PDN3 0.35 EX28DRAFT_0046 shikimate dehydrogenase 0.49 EX28DRAFT_3669 3-isopropylmalate dehydrogenase low > 76
Ralstonia solanacearum GMI1000 0.35 RS_RS13890 shikimate dehydrogenase 0.59 RS_RS09990 3-isopropylmalate dehydrogenase low > 80
Escherichia coli ECRC62 0.35 BNILDI_02165 aroE shikimate dehydrogenase 0.47 BNILDI_08545 leuA 2-isopropylmalate synthase 0.91 43
Castellaniella sp019104865 MT123 0.35 ABCV34_RS11620 shikimate dehydrogenase 0.60 ABCV34_RS04280 3-isopropylmalate dehydrogenase low > 48
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.35 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.47 GFF165 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 78
Escherichia coli ECOR27 0.35 NOLOHH_09355 aroE shikimate dehydrogenase 0.47 NOLOHH_03065 leuA 2-isopropylmalate synthase 0.86 40
Pectobacterium carotovorum WPP14 0.35 HER17_RS02250 shikimate dehydrogenase 0.47 HER17_RS03080 3-isopropylmalate dehydrogenase 0.94 12
Pseudomonas stutzeri RCH2 0.35 Psest_0029 shikimate 5-dehydrogenase 0.80 Psest_2589 3-isopropylmalate dehydrogenase — —
Enterobacter sp. TBS_079 0.35 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) 0.48 MPMX20_00768 3-isopropylmalate dehydrogenase 0.81 57
Paraburkholderia graminis OAS925 0.35 ABIE53_003560 shikimate dehydrogenase 0.58 ABIE53_004804 3-isopropylmalate dehydrogenase — —
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS16975 shikimate 5-dehydrogenase 0.58 BPHYT_RS33900 3-isopropylmalate dehydrogenase 0.73 15
Erwinia tracheiphila SCR3 0.34 LU632_RS22445 aroE shikimate dehydrogenase 0.44 LU632_RS02875 leuB 3-isopropylmalate dehydrogenase 0.50 50
Marinobacter adhaerens HP15 0.34 HP15_3750 shikimate dehydrogenase 0.66 HP15_1832 3-isopropylmalate dehydrogenase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.34 GFF5226 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.59 GFF3360 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.47 64
Kangiella aquimarina DSM 16071 0.30 B158DRAFT_0259 shikimate 5-dehydrogenase 0.65 B158DRAFT_1322 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 40
Cupriavidus basilensis FW507-4G11 0.30 RR42_RS17645 shikimate dehydrogenase 0.58 RR42_RS14385 3-isopropylmalate dehydrogenase 0.73 27
Acidovorax sp. GW101-3H11 0.29 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.59 Ac3H11_1528 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.88 19
Phaeobacter inhibens DSM 17395 0.26 PGA1_c35150 shikimate dehydrogenase AroE 0.55 PGA1_c29830 3-isopropylmalate dehydrogenase LeuB — —
Alteromonas macleodii MIT1002 0.26 MIT1002_00029 Shikimate dehydrogenase 0.46 MIT1002_00948 3-isopropylmalate dehydrogenase — —
Variovorax sp. OAS795 0.25 ABID97_RS06300 shikimate dehydrogenase 0.59 ABID97_RS08455 3-isopropylmalate dehydrogenase — —
Variovorax sp. SCN45 0.25 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.59 GFF3888 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 127
Agrobacterium fabrum C58 0.24 Atu0003 shikimate 5-dehydrogenase 0.52 Atu2791 3-isopropylmalate dehydrogenase — —
Bosea sp. OAE506 0.24 ABIE41_RS04650 shikimate dehydrogenase 0.49 ABIE41_RS11860 3-isopropylmalate dehydrogenase — —
Dinoroseobacter shibae DFL-12 0.24 Dshi_3450 shikimate 5-dehydrogenase (RefSeq) 0.55 Dshi_0081 3-isopropylmalate dehydrogenase (RefSeq) — —
Sinorhizobium meliloti 1021 0.23 SMc02791 shikimate 5-dehydrogenase 0.52 SMc04405 3-isopropylmalate dehydrogenase — —
Desulfovibrio vulgaris Hildenborough JW710 0.23 DVU0115 aroE shikimate 5-dehydrogenase (TIGR) 0.53 DVU2985 leuB 3-isopropylmalate dehydrogenase (TIGR) — —
Azospirillum sp. SherDot2 0.22 MPMX19_02560 Shikimate dehydrogenase (NADP(+)) 0.52 MPMX19_00607 3-isopropylmalate dehydrogenase — —
Rhodopseudomonas palustris CGA009 0.22 TX73_022410 shikimate dehydrogenase 0.48 TX73_001175 3-isopropylmalate dehydrogenase — —
Rhizobium sp. OAE497 0.22 ABIE40_RS19250 shikimate dehydrogenase 0.52 ABIE40_RS19050 3-isopropylmalate dehydrogenase — —
Rhodospirillum rubrum S1H 0.22 Rru_A3613 Quinate/Shikimate 5-dehydrogenase (NCBI) 0.53 Rru_A1191 3-isopropylmalate dehydrogenase (NCBI) — —
Synechococcus elongatus PCC 7942 0.20 Synpcc7942_2467 aroE shikimate 5-dehydrogenase 0.52 Synpcc7942_1505 leuB 3-isopropylmalate dehydrogenase — —
Magnetospirillum magneticum AMB-1 0.19 AMB_RS23010 shikimate dehydrogenase 0.52 AMB_RS20570 3-isopropylmalate dehydrogenase — —
Desulfovibrio vulgaris Miyazaki F 0.19 DvMF_1962 shikimate 5-dehydrogenase (RefSeq) 0.57 DvMF_1794 3-isopropylmalate dehydrogenase (RefSeq) — —
Caulobacter crescentus NA1000 Δfur 0.19 CCNA_00003 shikimate 5-dehydrogenase 0.48 CCNA_00193 3-isopropylmalate dehydrogenase low > 67
Caulobacter crescentus NA1000 0.19 CCNA_00003 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.48 CCNA_00193 3-isopropylmalate dehydrogenase 0.92 14
Brevundimonas sp. GW460-12-10-14-LB2 0.18 A4249_RS13660 shikimate dehydrogenase 0.41 A4249_RS09995 3-isopropylmalate dehydrogenase — —
Azospirillum brasilense Sp245 0.17 AZOBR_RS01765 shikimate 5-dehydrogenase 0.51 AZOBR_RS14130 3-isopropylmalate dehydrogenase — —
Sphingomonas koreensis DSMZ 15582 0.17 Ga0059261_2194 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.53 Ga0059261_3190 3-isopropylmalate dehydrogenase 0.90 41
Echinicola vietnamensis KMM 6221, DSM 17526 0.13 Echvi_1145 Shikimate 5-dehydrogenase 0.41 Echvi_2062 3-isopropylmalate dehydrogenase — —
Bacteroides ovatus ATCC 8483 0.12 BACOVA_05065 putative shikimate dehydrogenase 0.38 BACOVA_04600 3-isopropylmalate dehydrogenase — —
Mycobacterium tuberculosis H37Rv 0.12 Rv2552c Probable shikimate 5-dehydrogenase AroE (5-dehydroshikimate reductase) 0.26 Rv2995c Probable 3-isopropylmalate dehydrogenase LeuB (beta-IPM dehydrogenase) (IMDH) (3-IPM-DH) — —

Not shown: 3 genomes with orthologs for Xcc-8004.5020.1 only; 8 genomes with orthologs for Xcc-8004.1053.1 only