Conservation of cofitness between RR42_RS05910 and RR42_RS07845 in Cupriavidus basilensis FW507-4G11

90 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS05910 DNA repair protein 1.0 RR42_RS07845 transcription-repair coupling factor 0.53 10
Ralstonia solanacearum IBSBF1503 0.63 RALBFv3_RS05415 DNA repair protein RecN 0.82 RALBFv3_RS01445 transcription-repair coupling factor low > 76
Ralstonia solanacearum UW163 0.63 UW163_RS08210 DNA repair protein RecN 0.82 UW163_RS14755 transcription-repair coupling factor — —
Ralstonia sp. UNC404CL21Col 0.63 ABZR87_RS01065 DNA repair protein RecN 0.82 ABZR87_RS13240 transcription-repair coupling factor low > 80
Ralstonia solanacearum PSI07 0.63 RPSI07_RS11890 DNA repair protein RecN 0.82 RPSI07_RS16040 transcription-repair coupling factor low > 81
Ralstonia solanacearum GMI1000 0.62 RS_RS13275 DNA repair protein RecN 0.82 RS_RS08275 transcription-repair coupling factor low > 80
Herbaspirillum seropedicae SmR1 0.55 HSERO_RS03060 DNA repair protein 0.72 HSERO_RS15180 transcription-repair coupling factor 0.27 71
Paraburkholderia sabiae LMG 24235 0.55 QEN71_RS26535 DNA repair protein RecN 0.76 QEN71_RS22060 transcription-repair coupling factor low > 153
Paraburkholderia graminis OAS925 0.54 ABIE53_000856 DNA repair protein RecN (Recombination protein N) 0.77 ABIE53_002095 transcription-repair coupling factor (superfamily II helicase) 0.27 36
Paraburkholderia bryophila 376MFSha3.1 0.54 H281DRAFT_04692 DNA replication and repair protein RecN 0.76 H281DRAFT_00880 transcription-repair coupling factor low > 103
Burkholderia phytofirmans PsJN 0.53 BPHYT_RS03560 DNA repair protein 0.77 BPHYT_RS09290 helicase low > 109
Dechlorosoma suillum PS 0.46 Dsui_3072 DNA repair protein RecN 0.66 Dsui_2385 transcription-repair coupling factor Mfd 0.89 4
Castellaniella sp019104865 MT123 0.44 ABCV34_RS07470 DNA repair protein RecN 0.58 ABCV34_RS08660 transcription-repair coupling factor 0.58 39
Acidovorax sp. GW101-3H11 0.42 Ac3H11_3460 DNA repair protein RecN 0.64 Ac3H11_328 Transcription-repair coupling factor low > 79
Variovorax sp. SCN45 0.41 GFF2357 DNA repair protein RecN 0.64 GFF412 Transcription-repair coupling factor low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF829 DNA repair protein RecN 0.64 GFF4934 Transcription-repair coupling factor 0.59 82
Rahnella sp. WP5 0.38 EX31_RS21760 DNA repair protein RecN 0.44 EX31_RS24520 transcription-repair coupling factor low > 89
Pseudomonas sp. S08-1 0.37 OH686_17050 DNA repair protein RecN 0.48 OH686_21990 transcription-repair coupling factor low > 80
Pantoea sp. MT58 0.37 IAI47_04810 DNA repair protein RecN 0.46 IAI47_11975 transcription-repair coupling factor low > 76
Escherichia coli BL21 0.37 ECD_02504 recombination and repair protein 0.45 ECD_01110 transcription-repair coupling factor low > 61
Enterobacter sp. TBS_079 0.37 MPMX20_03486 DNA repair protein RecN 0.45 MPMX20_01795 Transcription-repair-coupling factor low > 85
Marinobacter adhaerens HP15 0.37 HP15_3084 DNA repair protein RecN 0.47 HP15_2257 transcription-repair-coupling factor 0.81 10
Escherichia coli HS(pFamp)R (ATCC 700891) 0.37 OHPLBJKB_01091 DNA repair protein RecN 0.45 OHPLBJKB_02552 Transcription-repair-coupling factor low > 73
Escherichia coli ECOR27 0.37 NOLOHH_12815 recN DNA repair protein RecN 0.45 NOLOHH_20995 mfd transcription-repair coupling factor low > 75
Escherichia coli ECRC62 0.37 BNILDI_11620 recN DNA repair protein RecN 0.45 BNILDI_19160 mfd transcription-repair coupling factor low > 75
Escherichia coli BW25113 0.37 b2616 recN recombination and repair protein (NCBI) 0.45 b1114 mfd transcription-repair coupling factor (NCBI) 0.32 34
Escherichia coli ECOR38 0.37 HEPCGN_20265 recN DNA repair protein RecN 0.45 HEPCGN_24015 mfd transcription-repair coupling factor low > 87
Dickeya dadantii 3937 0.37 DDA3937_RS04325 DNA repair protein RecN 0.45 DDA3937_RS13000 transcription-repair coupling factor low > 74
Escherichia coli ECRC100 0.36 OKFHMN_21145 recN DNA repair protein RecN 0.45 OKFHMN_03470 mfd transcription-repair coupling factor low > 80
Escherichia coli ECRC99 0.36 KEDOAH_07075 recN DNA repair protein RecN 0.45 KEDOAH_24285 mfd transcription-repair coupling factor — —
Escherichia fergusonii Becca 0.36 EFB2_01277 DNA repair protein RecN 0.45 EFB2_02861 Transcription-repair-coupling factor low > 86
Escherichia coli ECRC101 0.36 MCAODC_11670 recN DNA repair protein RecN 0.45 MCAODC_22830 mfd transcription-repair coupling factor low > 87
Escherichia coli ECRC102 0.36 NIAGMN_18915 recN DNA repair protein RecN 0.45 NIAGMN_24360 mfd transcription-repair coupling factor — —
Serratia liquefaciens MT49 0.36 IAI46_19635 DNA repair protein RecN 0.44 IAI46_10320 transcription-repair coupling factor low > 86
Escherichia coli ECRC98 0.36 JDDGAC_24810 recN DNA repair protein RecN 0.45 JDDGAC_07130 mfd transcription-repair coupling factor low > 86
Kangiella aquimarina DSM 16071 0.36 B158DRAFT_0601 DNA replication and repair protein RecN 0.46 B158DRAFT_1800 transcription-repair coupling factor 0.49 27
Enterobacter asburiae PDN3 0.36 EX28DRAFT_2719 DNA repair protein RecN 0.45 EX28DRAFT_1816 transcription-repair coupling factor (mfd) low > 76
Pseudomonas fluorescens GW456-L13 0.36 PfGW456L13_5106 DNA repair protein RecN 0.47 PfGW456L13_4027 Transcription-repair coupling factor low > 87
Pseudomonas fluorescens FW300-N2E2 0.36 Pf6N2E2_3370 DNA repair protein RecN 0.48 Pf6N2E2_2278 Transcription-repair coupling factor 0.30 30
Pseudomonas fluorescens FW300-N1B4 0.36 Pf1N1B4_1178 DNA repair protein RecN 0.47 Pf1N1B4_3916 Transcription-repair coupling factor 0.25 40
Klebsiella michiganensis M5al 0.36 BWI76_RS21560 DNA repair protein RecN 0.44 BWI76_RS11205 transcription-repair coupling factor low > 92
Shewanella amazonensis SB2B 0.36 Sama_1026 recombination and repair protein (RefSeq) 0.45 Sama_1330 transcription-repair coupling factor (RefSeq) 0.58 12
Pseudomonas sp. RS175 0.36 PFR28_00071 DNA repair protein RecN 0.47 PFR28_01123 Transcription-repair-coupling factor low > 88
Dickeya dianthicola 67-19 0.36 HGI48_RS04320 DNA repair protein RecN 0.44 HGI48_RS13065 transcription-repair coupling factor low > 71
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.36 GFF4162 DNA repair protein RecN 0.45 GFF3397 Transcription-repair coupling factor low > 78
Dickeya dianthicola ME23 0.35 DZA65_RS04235 DNA repair protein RecN 0.44 DZA65_RS13530 transcription-repair coupling factor low > 75
Pectobacterium carotovorum WPP14 0.35 HER17_RS17420 DNA repair protein RecN 0.45 HER17_RS08775 transcription-repair coupling factor low > 75
Erwinia tracheiphila SCR3 0.35 LU632_RS16985 recN DNA repair protein RecN 0.44 LU632_RS14730 mfd transcription-repair coupling factor low > 74
Pseudomonas stutzeri RCH2 0.35 Psest_0962 DNA repair protein RecN 0.49 Psest_1653 transcription-repair coupling factor (mfd) 0.56 8
Pseudomonas fluorescens FW300-N2C3 0.35 AO356_07510 DNA repair protein RecN 0.48 AO356_02270 transcription-repair coupling factor 0.45 21
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS25910 DNA repair protein RecN 0.47 PFLU_RS07710 transcription-repair coupling factor low > 109
Pseudomonas fluorescens SBW25 0.35 PFLU_RS25910 DNA repair protein RecN 0.47 PFLU_RS07710 transcription-repair coupling factor low > 109
Pseudomonas simiae WCS417 0.34 PS417_24070 recombination and repair protein 0.47 PS417_07635 transcription-repair coupling factor 0.31 15
Shewanella oneidensis MR-1 0.34 SO3462 recN DNA repair protein RecN (NCBI ptt file) 0.46 SO2255 mfd transcription-repair coupling factor (NCBI ptt file) low > 76
Pseudomonas fluorescens FW300-N2E3 0.34 AO353_05660 DNA repair protein RecN 0.47 AO353_00435 transcription-repair coupling factor 0.30 47
Shewanella sp. ANA-3 0.34 Shewana3_1104 recombination and repair protein (RefSeq) 0.45 Shewana3_2289 transcription-repair coupling factor (RefSeq) low > 73
Pseudomonas syringae pv. syringae B728a 0.34 Psyr_4197 DNA replication and repair protein RecN 0.48 Psyr_1896 transcription-repair coupling factor low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.34 Psyr_4197 DNA replication and repair protein RecN 0.48 Psyr_1896 transcription-repair coupling factor 0.53 7
Pseudomonas putida KT2440 0.33 PP_4729 factor used in recombination and DNA repair 0.47 PP_2148 transcription-repair coupling factor low > 96
Vibrio cholerae E7946 ATCC 55056 0.33 CSW01_04395 DNA repair protein RecN 0.46 CSW01_09445 transcription-repair coupling factor low > 62
Dyella japonica UNC79MFTsu3.2 0.33 ABZR86_RS05665 DNA repair protein RecN 0.47 ABZR86_RS21210 transcription-repair coupling factor low > 74
Rhodanobacter sp. FW510-T8 0.33 OKGIIK_07340 recN DNA repair protein RecN 0.46 OKGIIK_09105 mfd transcription-repair coupling factor low > 52
Shewanella loihica PV-4 0.32 Shew_1196 recombination and repair protein (RefSeq) 0.46 Shew_1630 transcription-repair coupling factor (RefSeq) low > 60
Rhodanobacter denitrificans FW104-10B01 0.32 LRK54_RS17960 DNA repair protein RecN 0.47 LRK54_RS02040 transcription-repair coupling factor low > 59
Rhodanobacter denitrificans MT42 0.32 LRK55_RS17815 DNA repair protein RecN 0.47 LRK55_RS01815 transcription-repair coupling factor low > 63
Acinetobacter radioresistens SK82 0.32 MPMX26_00239 DNA repair protein RecN 0.44 MPMX26_01319 Transcription-repair-coupling factor low > 36
Lysobacter sp. OAE881 0.32 ABIE51_RS11655 DNA repair protein RecN 0.46 ABIE51_RS14320 transcription-repair coupling factor low > 62
Xanthomonas campestris pv. campestris strain 8004 0.31 Xcc-8004.3431.1 DNA repair protein RecN 0.44 Xcc-8004.1775.1 Transcription-repair coupling factor low > 74
Alteromonas macleodii MIT1002 0.31 MIT1002_01443 Recombination protein N 0.48 MIT1002_01646 Transcription-repair-coupling factor low > 70
Sinorhizobium meliloti 1021 0.29 SMc01877 DNA repair protein 0.29 SMc04450 transcription-repair coupling factor low > 103
Magnetospirillum magneticum AMB-1 0.29 AMB_RS19520 DNA repair protein RecN 0.31 AMB_RS12390 transcription-repair coupling factor — —
Bosea sp. OAE506 0.28 ABIE41_RS12645 DNA repair protein RecN 0.29 ABIE41_RS15825 transcription-repair coupling factor low > 77
Agrobacterium fabrum C58 0.28 Atu2083 DNA repair protein RecN 0.29 Atu1778 transcription-repair coupling factor 0.31 31
Azospirillum sp. SherDot2 0.27 MPMX19_01601 DNA repair protein RecN 0.32 MPMX19_00876 Transcription-repair-coupling factor low > 112
Sphingomonas koreensis DSMZ 15582 0.27 Ga0059261_1026 DNA repair protein RecN 0.30 Ga0059261_0960 transcription-repair coupling factor (mfd) low > 68
Phocaeicola dorei CL03T12C01 0.26 ABI39_RS14500 DNA repair protein RecN 0.25 ABI39_RS11420 transcription-repair coupling factor low > 72
Phocaeicola vulgatus CL09T03C04 0.26 HMPREF1058_RS18225 DNA repair protein RecN 0.25 HMPREF1058_RS15450 transcription-repair coupling factor low > 67
Rhodospirillum rubrum S1H 0.25 Rru_A0940 DNA repair protein RecN (NCBI) 0.30 Rru_A1726 Transcription-repair coupling factor (NCBI) — —
Rhodopseudomonas palustris CGA009 0.24 TX73_018240 DNA repair protein RecN 0.30 TX73_013805 transcription-repair coupling factor low > 86
Caulobacter crescentus NA1000 0.23 CCNA_02062 DNA repair protein recN 0.31 CCNA_01920 transcription-repair coupling factor Mfd 0.53 32
Caulobacter crescentus NA1000 Δfur 0.23 CCNA_02062 DNA repair protein recN 0.31 CCNA_01920 transcription-repair coupling factor Mfd low > 67
Phaeobacter inhibens DSM 17395 0.23 PGA1_c09720 DNA repair protein RecN 0.28 PGA1_c14920 transcription-repair-coupling factor Mfd low > 62
Echinicola vietnamensis KMM 6221, DSM 17526 0.23 Echvi_2067 DNA repair protein RecN 0.24 Echvi_1312 transcription-repair coupling factor (mfd) 0.40 39
Synechococcus elongatus PCC 7942 0.23 Synpcc7942_1779 recN DNA repair protein RecN 0.26 Synpcc7942_1326 mfd transcription-repair coupling factor 0.70 8
Dinoroseobacter shibae DFL-12 0.22 Dshi_2413 DNA repair protein RecN (RefSeq) 0.28 Dshi_1561 transcription-repair coupling factor (RefSeq) low > 64
Pedobacter sp. GW460-11-11-14-LB5 0.21 CA265_RS14855 DNA repair protein RecN 0.25 CA265_RS21070 transcription-repair coupling factor 0.47 21
Brevundimonas sp. GW460-12-10-14-LB2 0.21 A4249_RS02620 DNA repair protein RecN 0.30 A4249_RS04775 transcription-repair coupling factor low > 48
Pontibacter actiniarum KMM 6156, DSM 19842 0.20 CA264_13235 DNA repair protein RecN 0.26 CA264_15820 transcription-repair coupling factor 0.62 8
Mycobacterium tuberculosis H37Rv 0.20 Rv1696 Probable DNA repair protein RecN (recombination protein N) 0.25 Rv1020 Probable transcription-repair coupling factor Mfd (TRCF) low > 58
Desulfovibrio vulgaris Hildenborough JW710 0.20 DVU2463 recN DNA repair protein RecN (TIGR) 0.26 DVU1903 mfd transcription-repair coupling factor (TIGR) 0.32 38
Bifidobacterium breve UCC2003 0.15 BBR_RS14030 DNA repair protein RecN 0.26 BBR_RS14115 transcription-repair coupling factor low > 34

Not shown: 9 genomes with orthologs for RR42_RS05910 only; 2 genomes with orthologs for RR42_RS07845 only