Conservation of cofitness between Psyr_4683 and Psyr_4687 in Pseudomonas syringae pv. syringae B728a

98 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_4683 dethiobiotin synthase 1.0 Psyr_4687 biotin synthase 0.82 2
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_4683 dethiobiotin synthase 1.00 Psyr_4687 biotin synthase 0.78 1
Pseudomonas simiae WCS417 0.83 PS417_25985 dethiobiotin synthetase 0.95 PS417_26005 biotin synthase 0.65 2
Pseudomonas fluorescens SBW25 0.82 PFLU_RS27630 dethiobiotin synthase 0.95 PFLU_RS27650 biotin synthase BioB 0.69 6
Pseudomonas fluorescens SBW25-INTG 0.82 PFLU_RS27630 dethiobiotin synthase 0.95 PFLU_RS27650 biotin synthase BioB 0.80 4
Pseudomonas fluorescens FW300-N2E3 0.81 AO353_07505 dethiobiotin synthetase 0.94 AO353_07525 biotin synthase 0.94 4
Pseudomonas orientalis W4I3 0.81 QF045_RS00395 dethiobiotin synthase 0.94 QF045_RS00415 biotin synthase BioB low > 93
Pseudomonas lactucae CFBP13502 0.81 GEMAOFIL_05318 ATP-dependent dethiobiotin synthetase BioD 1 0.94 GEMAOFIL_05322 Biotin synthase low > 96
Pseudomonas fluorescens GW456-L13 0.81 PfGW456L13_1151 Dethiobiotin synthetase (EC 6.3.3.3) 0.95 PfGW456L13_1147 Biotin synthase (EC 2.8.1.6) 0.91 4
Pseudomonas sp. DMC3 0.80 GFF72 ATP-dependent dethiobiotin synthetase BioD 1 0.94 GFF76 Biotin synthase low > 89
Pseudomonas fluorescens FW300-N2E2 0.80 Pf6N2E2_4764 Dethiobiotin synthetase (EC 6.3.3.3) 0.95 Pf6N2E2_4759 Biotin synthase (EC 2.8.1.6) 0.80 4
Pseudomonas fluorescens FW300-N1B4 0.80 Pf1N1B4_2491 Dethiobiotin synthetase (EC 6.3.3.3) 0.95 Pf1N1B4_2487 Biotin synthase (EC 2.8.1.6) 0.84 4
Pseudomonas fluorescens FW300-N2C3 0.80 AO356_14155 dethiobiotin synthetase 0.95 AO356_14135 biotin synthase 0.70 5
Pseudomonas sp. RS175 0.79 PFR28_04099 ATP-dependent dethiobiotin synthetase BioD 1 0.94 PFR28_04103 Biotin synthase — —
Pseudomonas sp. SVBP6 0.77 COO64_RS22705 bioD dethiobiotin synthase 0.94 COO64_RS22725 bioB biotin synthase BioB 0.91 14
Pseudomonas segetis P6 0.74 MPMX49_00763 ATP-dependent dethiobiotin synthetase BioD 1 0.89 MPMX49_00759 Biotin synthase 0.94 2
Pseudomonas sp. BP01 0.73 JOY50_RS17950 bioD dethiobiotin synthase 0.93 JOY50_RS17930 bioB biotin synthase BioB 0.96 4
Pseudomonas putida KT2440 0.72 PP_0366 dethiobiotin synthetase 0.94 PP_0362 Biotin synthase 0.82 5
Pseudomonas sp. S08-1 0.72 OH686_10335 dethiobiotin synthase 0.89 OH686_10355 biotin synthase 0.96 4
Pseudomonas stutzeri RCH2 0.65 Psest_0415 dethiobiotin synthase 0.89 Psest_0411 biotin synthetase 0.81 4
Pseudomonas aeruginosa PUPa3 0.64 DQ20_RS36805 bioD;go_function=dethiobiotin dethiobiotin synthase 0.89 DQ20_RS36825 bioB;go_function=biotin biotin synthase BioB — —
Pseudomonas aeruginosa MRSN321 0.64 DY961_RS22525 bioD;go_function=dethiobiotin dethiobiotin synthase 0.89 DY961_RS22505 bioB;go_function=biotin biotin synthase BioB — —
Pseudomonas aeruginosa PA14 0.64 IKLFDK_22915 dethiobiotin synthase 0.89 IKLFDK_22935 biotin synthase BioB 0.89 2
Shewanella loihica PV-4 0.55 Shew_1722 dethiobiotin synthase (RefSeq) 0.65 Shew_1719 biotin synthase (RefSeq) — —
Shewanella sp. ANA-3 0.53 Shewana3_2516 bioD dithiobiotin synthetase (RefSeq) 0.66 Shewana3_2519 biotin synthase (RefSeq) — —
Shewanella oneidensis MR-1 0.52 SO2737 bioD dethiobiotin synthase (NCBI ptt file) 0.66 SO2740 bioB biotin synthase (NCBI ptt file) — —
Marinobacter adhaerens HP15 0.49 HP15_2482 dethiobiotin synthetase 0.71 HP15_2486 biotin synthase 0.51 19
Dickeya dianthicola ME23 0.49 DZA65_RS08980 ATP-dependent dethiobiotin synthetase BioD 0.65 DZA65_RS08965 biotin synthase BioB 0.53 34
Dickeya dianthicola 67-19 0.49 HGI48_RS08690 ATP-dependent dethiobiotin synthetase BioD 0.65 HGI48_RS08675 biotin synthase BioB 0.75 2
Serratia liquefaciens MT49 0.48 IAI46_06540 ATP-dependent dethiobiotin synthetase BioD 0.67 IAI46_06525 biotin synthase BioB low > 87
Dickeya dadantii 3937 0.48 DDA3937_RS08525 ATP-dependent dethiobiotin synthetase BioD 0.65 DDA3937_RS08510 biotin synthase BioB low > 74
Pectobacterium carotovorum WPP14 0.48 HER17_RS13445 dethiobiotin synthase 0.65 HER17_RS13460 biotin synthase BioB low > 75
Enterobacter asburiae PDN3 0.47 EX28DRAFT_2213 dethiobiotin synthase 0.65 EX28DRAFT_2216 biotin synthase (EC 2.8.1.6) low > 76
Enterobacter sp. TBS_079 0.47 MPMX20_01406 ATP-dependent dethiobiotin synthetase BioD 1 0.65 MPMX20_01403 Biotin synthase low > 85
Escherichia coli ECRC98 0.47 JDDGAC_10020 bioD dethiobiotin synthase 0.66 JDDGAC_10035 bioB biotin synthase BioB low > 87
Escherichia coli ECRC99 0.47 KEDOAH_21525 bioD dethiobiotin synthase 0.66 KEDOAH_21510 bioB biotin synthase BioB — —
Escherichia coli ECRC101 0.47 MCAODC_25600 bioD dethiobiotin synthase 0.66 MCAODC_25615 bioB biotin synthase BioB 0.45 10
Escherichia coli ECRC100 0.47 OKFHMN_06385 bioD dethiobiotin synthase 0.66 OKFHMN_06400 bioB biotin synthase BioB low > 79
Escherichia coli ECRC102 0.47 NIAGMN_04430 bioD dethiobiotin synthase 0.66 NIAGMN_04445 bioB biotin synthase BioB low > 80
Escherichia coli BL21 0.47 ECD_00745 dethiobiotin synthetase 0.66 ECD_00742 biotin synthase low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.47 OHPLBJKB_02935 ATP-dependent dethiobiotin synthetase BioD 1 0.66 OHPLBJKB_02938 Biotin synthase low > 74
Escherichia fergusonii Becca 0.46 EFB2_03327 ATP-dependent dethiobiotin synthetase BioD 1 0.66 EFB2_03330 Biotin synthase low > 86
Escherichia coli Nissle 1917 0.46 ECOLIN_RS04145 dethiobiotin synthase 0.66 ECOLIN_RS04130 biotin synthase BioB — —
Escherichia coli BW25113 0.46 b0778 bioD dethiobiotin synthetase (NCBI) 0.66 b0775 bioB biotin synthase (NCBI) 0.46 1
Pantoea agglomerans CFBP13505 P0401 0.46 PagCFBP13505_RS03785 ATP-dependent dethiobiotin synthetase BioD 0.66 PagCFBP13505_RS03770 biotin synthase BioB low > 74
Escherichia coli ECOR27 0.46 NOLOHH_22755 bioD dethiobiotin synthase 0.66 NOLOHH_22770 bioB biotin synthase BioB low > 76
Escherichia coli ECOR38 0.46 HEPCGN_01655 bioD dethiobiotin synthase 0.66 HEPCGN_01640 bioB biotin synthase BioB low > 88
Pantoea sp. MT58 0.46 IAI47_13515 ATP-dependent dethiobiotin synthetase BioD 0.66 IAI47_13530 biotin synthase BioB 0.29 1
Escherichia coli ECRC62 0.45 BNILDI_21025 bioD dethiobiotin synthase 0.66 BNILDI_21040 bioB biotin synthase BioB low > 75
Klebsiella pneumoniae MKP103 0.45 KDGMDA_17040 dethiobiotin synthase 0.66 KDGMDA_17025 biotin synthase BioB 0.30 90
Klebsiella michiganensis M5al 0.44 BWI76_RS08775 dethiobiotin synthase 0.67 BWI76_RS08760 biotin synthase 0.41 1
Shewanella amazonensis SB2B 0.44 Sama_1441 bioD dithiobiotin synthetase (RefSeq) 0.66 Sama_1438 biotin synthase (RefSeq) — —
Rahnella sp. WP5 0.44 EX31_RS23710 ATP-dependent dethiobiotin synthetase BioD 0.67 EX31_RS23695 biotin synthase BioB 0.54 16
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS12700 dethiobiotin synthase 0.58 ABZR86_RS15840 biotin synthase BioB low > 74
Erwinia tracheiphila SCR3 0.44 LU632_RS09145 bioD dethiobiotin synthase 0.67 LU632_RS09130 bioB biotin synthase BioB — —
Lysobacter sp. OAE881 0.43 ABIE51_RS17990 dethiobiotin synthase 0.59 ABIE51_RS01140 biotin synthase BioB low > 62
Erwinia tracheiphila HP pepo 2.2 0.43 IJEDHG_19580 bioD dethiobiotin synthase 0.67 IJEDHG_19565 bioB biotin synthase BioB — —
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_16455 bioD dethiobiotin synthase 0.55 OKGIIK_13650 bioB biotin synthase BioB low > 53
Rhodanobacter denitrificans FW104-10B01 0.42 LRK54_RS07180 dethiobiotin synthase 0.55 LRK54_RS10260 biotin synthase BioB low > 59
Rhodanobacter sp000427505 FW510-R12 0.42 LRK53_RS01195 dethiobiotin synthase 0.55 LRK53_RS03040 biotin synthase BioB — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.41 GFF674 Dethiobiotin synthetase (EC 6.3.3.3) 0.65 GFF671 Biotin synthase (EC 2.8.1.6) 0.40 47
Dechlorosoma suillum PS 0.41 Dsui_2884 dethiobiotin synthase 0.52 Dsui_1297 biotin synthetase 0.77 5
Rhodanobacter denitrificans MT42 0.41 LRK55_RS06915 dethiobiotin synthase 0.55 LRK55_RS09900 biotin synthase BioB low > 63
Alteromonas macleodii MIT1002 0.41 MIT1002_01382 ATP-dependent dethiobiotin synthetase BioD 1 0.69 MIT1002_01379 Biotin synthase 0.97 3
Erwinia amylovora T8 0.41 OLJFJH_16745 dethiobiotin synthase 0.67 OLJFJH_16760 biotin synthase BioB low > 58
Kangiella aquimarina DSM 16071 0.40 B158DRAFT_0869 dethiobiotin synthase 0.66 B158DRAFT_0864 biotin synthase (EC 2.8.1.6) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.40 GFF3994 Dethiobiotin synthetase (EC 6.3.3.3) 0.54 GFF3992 Biotin synthase (EC 2.8.1.6) — —
Vibrio cholerae E7946 ATCC 55056 0.38 CSW01_05660 dethiobiotin synthase 0.69 CSW01_05645 biotin synthase low > 62
Burkholderia phytofirmans PsJN 0.37 BPHYT_RS02155 dithiobiotin synthetase 0.58 BPHYT_RS02150 biotin synthase 0.48 3
Paraburkholderia graminis OAS925 0.37 ABIE53_000578 dethiobiotin synthetase 0.58 ABIE53_000577 biotin synthase 0.93 2
Variovorax sp. OAS795 0.36 ABID97_RS16255 dethiobiotin synthase 0.51 ABID97_RS13955 biotin synthase BioB — —
Variovorax sp. SCN45 0.36 GFF143 Dethiobiotin synthase BioD (EC 6.3.3.3) 0.52 GFF937 Biotin synthase (EC 2.8.1.6) low > 127
Herbaspirillum seropedicae SmR1 0.36 HSERO_RS12255 dethiobiotin synthetase 0.51 HSERO_RS12235 biotin synthase 0.48 1
Ralstonia sp. UNC404CL21Col 0.35 ABZR87_RS12345 dethiobiotin synthase 0.60 ABZR87_RS06265 biotin synthase BioB 0.43 15
Acidovorax sp. GW101-3H11 0.35 Ac3H11_3829 Dethiobiotin synthetase (EC 6.3.3.3) 0.52 Ac3H11_2272 Biotin synthase (EC 2.8.1.6) low > 79
Ralstonia solanacearum PSI07 0.35 RPSI07_RS16695 dethiobiotin synthase 0.60 RPSI07_RS22850 biotin synthase BioB low > 81
Paraburkholderia bryophila 376MFSha3.1 0.35 H281DRAFT_02096 dethiobiotin synthetase 0.58 H281DRAFT_02097 biotin synthase 0.77 3
Ralstonia solanacearum UW163 0.35 UW163_RS14160 dethiobiotin synthase 0.60 UW163_RS03115 biotin synthase BioB — —
Ralstonia solanacearum IBSBF1503 0.35 RALBFv3_RS00825 dethiobiotin synthase 0.60 RALBFv3_RS10465 biotin synthase BioB — —
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.4530.1 Dethiobiotin synthetase (EC 6.3.3.3) 0.57 Xcc-8004.505.1 Biotin synthase (EC 2.8.1.6) 0.81 3
Ralstonia solanacearum GMI1000 0.34 RS_RS07440 ATP-dependent dethiobiotin synthetase BioD 0.60 RS_RS01305 biotin synthase — —
Methylophilus sp. DMC18 0.32 GFF1686 ATP-dependent dethiobiotin synthetase BioD 1 0.54 GFF1682 Biotin synthase — —
Paraburkholderia sabiae LMG 24235 0.29 QEN71_RS01090 dethiobiotin synthase 0.58 QEN71_RS01085 biotin synthase BioB — —
Cupriavidus basilensis FW507-4G11 0.27 RR42_RS00935 dethiobiotin synthetase 0.57 RR42_RS00940 biotin synthase — —
Phocaeicola vulgatus CL09T03C04 0.19 HMPREF1058_RS17975 ATP-dependent dethiobiotin synthetase BioD 0.24 HMPREF1058_RS17950 biotin synthase BioB 0.92 4
Rhizobium sp. OAE497 0.19 ABIE40_RS21065 dethiobiotin synthase 0.55 ABIE40_RS21075 biotin synthase BioB low > 107
Agrobacterium fabrum C58 0.18 Atu3999 dithiobiotin synthetase 0.57 Atu3997 biotin synthetase 0.74 4
Methanococcus maripaludis JJ 0.17 MMJJ_RS06270 dethiobiotin synthase 0.18 MMJJ_RS07980 biotin synthase BioB 0.96 2
Pedobacter sp. GW460-11-11-14-LB5 0.17 CA265_RS09760 dethiobiotin synthase 0.47 CA265_RS09475 biotin synthase BioB low > 88
Synechococcus elongatus PCC 7942 0.17 Synpcc7942_0030 bioD dethiobiotin synthase 0.51 Synpcc7942_0419 bioB biotin synthase — —
Sphingobium sp. HT1-2 0.17 GFF3209 Dethiobiotin synthase BioD (EC 6.3.3.3) 0.53 GFF133 Biotin synthase (EC 2.8.1.6) low > 95
Methanococcus maripaludis S2 0.17 MMP_RS08095 dethiobiotin synthase 0.18 MMP_RS06370 biotin synthase BioB 0.97 2
Castellaniella sp019104865 MT123 0.16 ABCV34_RS15285 dethiobiotin synthase 0.55 ABCV34_RS15280 biotin synthase BioB low > 48
Phaeobacter inhibens DSM 17395 0.16 PGA1_c09140 dethiobiotin synthetase BioD 0.54 PGA1_c09120 biotin synthase BioB 0.51 4
Sphingomonas koreensis DSMZ 15582 0.15 Ga0059261_3673 dethiobiotin synthase 0.55 Ga0059261_3989 biotin synthase (EC 2.8.1.6) low > 68
Cellulophaga baltica 18 0.15 M666_RS03375 dethiobiotin synthase 0.49 M666_RS03345 biotin synthase BioB — —
Synechocystis sp000284455 PCC 6803 0.14 SGL_RS15560 dethiobiotin synthase 0.24 SGL_RS07055 biotin synthase BioB — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.14 CA264_02415 dethiobiotin synthase 0.48 CA264_02425 biotin synthase BioB low > 74
Rhodopseudomonas palustris CGA009 0.13 TX73_015410 dethiobiotin synthase 0.55 TX73_010535 biotin synthase BioB 0.89 2

Not shown: 1 genomes with orthologs for Psyr_4683 only; 13 genomes with orthologs for Psyr_4687 only