| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_3888 | | endonuclease III / DNA-(apurinic or apyrimidinic site) lyase | 1.0 | Psyr_1407 | | Protein of unknown function DUF28 | 0.32 | 12 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_3888 | | endonuclease III / DNA-(apurinic or apyrimidinic site) lyase | 1.00 | Psyr_1407 | | Protein of unknown function DUF28 | low | > 86 |
| Pseudomonas simiae WCS417 | 0.92 | PS417_05655 | | endonuclease III | 0.86 | PS417_22460 | | hypothetical protein | — | — |
| Pseudomonas fluorescens SBW25 | 0.92 | PFLU_RS05740 | | endonuclease III | 0.86 | PFLU_RS24100 | | YebC/PmpR family DNA-binding transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.92 | PFLU_RS05740 | | endonuclease III | 0.86 | PFLU_RS24100 | | YebC/PmpR family DNA-binding transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.91 | AO353_04085 | | endonuclease III | 0.86 | AO353_03595 | | hypothetical protein | low | > 101 |
| Pseudomonas putida KT2440 | 0.90 | PP_1092 | | DNA glycosylase/apyrimidinic (AP) lyase specific for damaged pyrimidinic sites | 0.83 | PP_1214 | | putative transcriptional regulatory protein | low | > 96 |
| Pseudomonas fluorescens FW300-N2C3 | 0.90 | AO356_18345 | | endonuclease III | 0.89 | AO356_18010 | | hypothetical protein | low | > 104 |
| Pseudomonas fluorescens FW300-N1B4 | 0.90 | Pf1N1B4_739 | | Endonuclease III (EC 4.2.99.18) | 0.86 | Pf1N1B4_640 | | FIG000859: hypothetical protein YebC | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.90 | PfGW456L13_1753 | | Endonuclease III (EC 4.2.99.18) | 0.91 | PfGW456L13_1850 | | FIG000859: hypothetical protein YebC | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.90 | Pf6N2E2_5594 | | Endonuclease III (EC 4.2.99.18) | 0.89 | Pf6N2E2_5534 | | FIG000859: hypothetical protein YebC | low | > 103 |
| Pseudomonas sp. S08-1 | 0.90 | OH686_03910 | | endonuclease III | 0.75 | OH686_19120 | | Probable transcriptional regulatory protein YebC | low | > 80 |
| Pseudomonas sp. RS175 | 0.90 | PFR28_03349 | | Endonuclease III | 0.89 | PFR28_03415 | | Transcriptional regulatory protein PmpR | low | > 88 |
| Pseudomonas stutzeri RCH2 | 0.86 | Psest_3118 | | endonuclease III | 0.75 | Psest_1494 | | DNA-binding regulatory protein, YebC/PmpR family | — | — |
| Marinobacter adhaerens HP15 | 0.76 | HP15_1285 | | endonuclease III | 0.62 | HP15_2043 | | protein YebC | low | > 73 |
| Kangiella aquimarina DSM 16071 | 0.76 | B158DRAFT_2365 | | DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) | 0.64 | B158DRAFT_1123 | | DNA-binding regulatory protein, YebC/PmpR family | low | > 40 |
| Escherichia coli ECRC62 | 0.73 | BNILDI_16835 | nth | endonuclease III | 0.67 | BNILDI_15490 | | putative transcriptional regulatory protein YebC | low | > 75 |
| Escherichia coli Nissle 1917 | 0.73 | ECOLIN_RS09110 | | endonuclease III | 0.67 | ECOLIN_RS10380 | | YebC/PmpR family DNA-binding transcriptional regulator | — | — |
| Escherichia coli BL21 | 0.73 | ECD_01603 | | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) | 0.67 | ECD_01835 | | UPF0082 family protein | — | — |
| Escherichia coli ECOR38 | 0.73 | HEPCGN_05910 | nth | endonuclease III | 0.67 | HEPCGN_04665 | | putative transcriptional regulatory protein YebC | low | > 87 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.73 | OHPLBJKB_02093 | | Endonuclease III | 0.67 | OHPLBJKB_01864 | | putative transcriptional regulatory protein YebC | low | > 73 |
| Escherichia coli BW25113 | 0.73 | b1633 | nth | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) (NCBI) | 0.67 | b1864 | yebC | hypothetical protein (NCBI) | low | > 76 |
| Escherichia coli ECOR27 | 0.73 | NOLOHH_18045 | nth | endonuclease III | 0.67 | NOLOHH_16700 | | putative transcriptional regulatory protein YebC | — | — |
| Escherichia fergusonii Becca | 0.73 | EFB2_02359 | | Endonuclease III | 0.67 | EFB2_02078 | | putative transcriptional regulatory protein YebC | low | > 86 |
| Herbaspirillum seropedicae SmR1 | 0.73 | HSERO_RS08070 | | endonuclease IV | 0.57 | HSERO_RS17750 | | transcriptional regulator | — | — |
| Erwinia tracheiphila SCR3 | 0.73 | LU632_RS11305 | nth | endonuclease III | 0.65 | LU632_RS13425 | | YebC/PmpR family DNA-binding transcriptional regulator | low | > 74 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.73 | GFF3641 | | Endonuclease III (EC 4.2.99.18) | 0.67 | GFF1645 | | FIG000859: hypothetical protein YebC | low | > 78 |
| Pantoea sp. MT58 | 0.73 | IAI47_10475 | | endonuclease III | 0.69 | IAI47_08435 | | YebC/PmpR family DNA-binding transcriptional regulator | low | > 76 |
| Escherichia coli ECRC102 | 0.73 | NIAGMN_00540 | nth | endonuclease III | 0.67 | NIAGMN_01805 | | putative transcriptional regulatory protein YebC | — | — |
| Escherichia coli ECRC101 | 0.73 | MCAODC_17885 | nth | endonuclease III | 0.67 | MCAODC_19150 | | putative transcriptional regulatory protein YebC | low | > 87 |
| Escherichia coli ECRC100 | 0.73 | OKFHMN_27525 | nth | endonuclease III | 0.67 | OKFHMN_26255 | | putative transcriptional regulatory protein YebC | low | > 80 |
| Escherichia coli ECRC99 | 0.73 | KEDOAH_00580 | nth | endonuclease III | 0.67 | KEDOAH_01850 | | putative transcriptional regulatory protein YebC | — | — |
| Escherichia coli ECRC98 | 0.73 | JDDGAC_02115 | nth | endonuclease III | 0.67 | JDDGAC_00830 | | putative transcriptional regulatory protein YebC | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.72 | HER17_RS10860 | | endonuclease III | 0.68 | HER17_RS11855 | | YebC/PmpR family DNA-binding transcriptional regulator | low | > 75 |
| Enterobacter asburiae PDN3 | 0.72 | EX28DRAFT_1629 | | DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) | 0.67 | EX28DRAFT_0693 | | DNA-binding regulatory protein, YebC/PmpR family | low | > 76 |
| Klebsiella michiganensis M5al | 0.71 | BWI76_RS16385 | | endonuclease III | 0.67 | BWI76_RS18160 | | YebC/PmpR family DNA-binding transcriptional regulator | — | — |
| Serratia liquefaciens MT49 | 0.71 | IAI46_11455 | | endonuclease III | 0.67 | IAI46_14635 | | YebC/PmpR family DNA-binding transcriptional regulator | low | > 86 |
| Rahnella sp. WP5 | 0.71 | EX31_RS06590 | | endonuclease III | 0.68 | EX31_RS11685 | | YebC/PmpR family DNA-binding transcriptional regulator | low | > 89 |
| Vibrio cholerae E7946 ATCC 55056 | 0.71 | CSW01_05145 | | endonuclease III | 0.31 | CSW01_14085 | | transcriptional regulator | low | > 62 |
| Enterobacter sp. TBS_079 | 0.71 | MPMX20_02005 | | Endonuclease III | 0.67 | MPMX20_02769 | | putative transcriptional regulatory protein YebC | low | > 85 |
| Shewanella oneidensis MR-1 | 0.71 | SO2514 | nth | endonuclease III (NCBI ptt file) | 0.70 | SO2432 | | conserved hypothetical protein TIGR01033 (NCBI ptt file) | low | > 76 |
| Acinetobacter radioresistens SK82 | 0.70 | MPMX26_02306 | | Endonuclease III | 0.60 | MPMX26_01851 | | putative transcriptional regulatory protein YebC | low | > 36 |
| Rhodanobacter denitrificans MT42 | 0.70 | LRK55_RS01640 | | endonuclease III | 0.46 | LRK55_RS04700 | | YebC/PmpR family DNA-binding transcriptional regulator | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.70 | LRK54_RS01850 | | endonuclease III | 0.46 | LRK54_RS04920 | | YebC/PmpR family DNA-binding transcriptional regulator | low | > 59 |
| Dickeya dianthicola ME23 | 0.70 | DZA65_RS11025 | | endonuclease III | 0.68 | DZA65_RS10510 | | YebC/PmpR family DNA-binding transcriptional regulator | low | > 75 |
| Dickeya dianthicola 67-19 | 0.70 | HGI48_RS10545 | | endonuclease III | 0.68 | HGI48_RS10095 | | YebC/PmpR family DNA-binding transcriptional regulator | low | > 71 |
| Shewanella amazonensis SB2B | 0.70 | Sama_1836 | | endonuclease III (RefSeq) | 0.68 | Sama_1842 | | hypothetical protein (RefSeq) | low | > 62 |
| Shewanella sp. ANA-3 | 0.69 | Shewana3_2174 | | DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (RefSeq) | 0.70 | Shewana3_1954 | | hypothetical protein (RefSeq) | low | > 73 |
| Variovorax sp. SCN45 | 0.69 | GFF418 | | Endonuclease III (EC 4.2.99.18) | 0.51 | GFF303 | | Probable transcriptional regulatory protein YebC | low | > 127 |
| Dyella japonica UNC79MFTsu3.2 | 0.69 | ABZR86_RS08185 | | endonuclease III | 0.41 | ABZR86_RS10850 | | YebC/PmpR family DNA-binding transcriptional regulator | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.69 | QEN71_RS24560 | | endonuclease III | 0.55 | QEN71_RS24395 | | YebC/PmpR family DNA-binding transcriptional regulator | low | > 153 |
| Dickeya dadantii 3937 | 0.69 | DDA3937_RS10545 | | endonuclease III | 0.68 | DDA3937_RS10065 | | YebC/PmpR family DNA-binding transcriptional regulator | low | > 74 |
| Dechlorosoma suillum PS | 0.68 | Dsui_2985 | | endonuclease III | 0.55 | Dsui_0489 | | DNA-binding regulatory protein, YebC/PmpR family | low | > 51 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.68 | Xcc-8004.3350.1 | | Endonuclease III (EC 4.2.99.18) | 0.49 | Xcc-8004.1434.1 | | FIG000859: hypothetical protein YebC | low | > 74 |
| Acidovorax sp. GW101-3H11 | 0.68 | Ac3H11_1010 | | Endonuclease III (EC 4.2.99.18) | 0.50 | Ac3H11_2422 | | FIG000859: hypothetical protein | — | — |
| Ralstonia sp. UNC404CL21Col | 0.68 | ABZR87_RS09915 | | endonuclease III | 0.53 | ABZR87_RS15405 | | YebC/PmpR family DNA-binding transcriptional regulator | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.68 | RR42_RS05970 | | endonuclease III | 0.55 | RR42_RS04735 | | hypothetical protein | low | > 128 |
| Ralstonia solanacearum PSI07 | 0.68 | RPSI07_RS19265 | | endonuclease III | 0.53 | RPSI07_RS13685 | | YebC/PmpR family DNA-binding transcriptional regulator | — | — |
| Shewanella loihica PV-4 | 0.68 | Shew_2072 | | endonuclease III (RefSeq) | 0.68 | Shew_2078 | | hypothetical protein (RefSeq) | — | — |
| Ralstonia solanacearum GMI1000 | 0.68 | RS_RS04975 | | endonuclease III | 0.53 | RS_RS10990 | | YebC/PmpR family DNA-binding transcriptional regulator | low | > 80 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.68 | GFF4003 | | Endonuclease III (EC 4.2.99.18) | 0.51 | GFF4523 | | FIG000859: hypothetical protein YebC | low | > 90 |
| Paraburkholderia graminis OAS925 | 0.68 | ABIE53_001423 | | endonuclease-3 | 0.56 | ABIE53_001546 | | YebC/PmpR family DNA-binding regulatory protein | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.67 | H281DRAFT_00293 | | DNA-(apurinic or apyrimidinic site) lyase /endonuclease III | 0.56 | H281DRAFT_04522 | | DNA-binding regulatory protein, YebC/PmpR family | — | — |
| Ralstonia solanacearum UW163 | 0.67 | UW163_RS11660 | | endonuclease III | 0.53 | UW163_RS10130 | | YebC/PmpR family DNA-binding transcriptional regulator | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.67 | RALBFv3_RS14195 | | endonuclease III | 0.53 | RALBFv3_RS03540 | | YebC/PmpR family DNA-binding transcriptional regulator | — | — |
| Burkholderia phytofirmans PsJN | 0.67 | BPHYT_RS06080 | | endonuclease IV | 0.56 | BPHYT_RS06410 | | transcriptional regulator | low | > 109 |
| Rhodanobacter sp. FW510-T8 | 0.67 | OKGIIK_04675 | nth | endonuclease III | 0.45 | OKGIIK_01830 | tACO1 | YebC/PmpR family DNA-binding transcriptional regulator | low | > 52 |
| Lysobacter sp. OAE881 | 0.66 | ABIE51_RS07560 | | endonuclease III | 0.50 | ABIE51_RS05035 | | YebC/PmpR family DNA-binding transcriptional regulator | low | > 62 |
| Variovorax sp. OAS795 | 0.66 | ABID97_RS17315 | | endonuclease III | 0.50 | ABID97_RS16740 | | YebC/PmpR family DNA-binding transcriptional regulator | low | > 91 |
| Castellaniella sp019104865 MT123 | 0.65 | ABCV34_RS08465 | | endonuclease III | 0.51 | ABCV34_RS02555 | | YebC/PmpR family DNA-binding transcriptional regulator | — | — |
| Azospirillum brasilense Sp245 | 0.61 | AZOBR_RS01565 | | endonuclease III | 0.44 | AZOBR_RS09035 | | transcriptional regulator | low | > 97 |
| Azospirillum sp. SherDot2 | 0.61 | MPMX19_02500 | | Endonuclease III | 0.44 | MPMX19_00695 | | putative transcriptional regulatory protein | low | > 112 |
| Magnetospirillum magneticum AMB-1 | 0.59 | AMB_RS21105 | | endonuclease III | 0.46 | AMB_RS16265 | | YebC/PmpR family DNA-binding transcriptional regulator | — | — |
| Bosea sp. OAE506 | 0.58 | ABIE41_RS03410 | | endonuclease III | 0.48 | ABIE41_RS09460 | | YebC/PmpR family DNA-binding transcriptional regulator | low | > 77 |
| Phaeobacter inhibens DSM 17395 | 0.57 | PGA1_c29040 | | endonuclease III | 0.51 | PGA1_c21770 | | DNA-binding regulatory protein, YebC/PmpR family | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.56 | Ga0059261_2546 | | DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) | 0.42 | Ga0059261_0824 | | DNA-binding regulatory protein, YebC/PmpR family | — | — |
| Dinoroseobacter shibae DFL-12 | 0.56 | Dshi_3023 | | endonuclease III (RefSeq) | 0.47 | Dshi_2762 | | protein of unknown function DUF28 (RefSeq) | low | > 64 |
| Rhodospirillum rubrum S1H | 0.56 | Rru_A0153 | | Endonuclease III/Nth (NCBI) | 0.41 | Rru_A1086 | | hypothetical protein (RefSeq) | low | > 58 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.55 | A4249_RS15000 | | endonuclease III | 0.37 | A4249_RS15840 | | YebC/PmpR family DNA-binding transcriptional regulator | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.51 | CCNA_03847 | | endonuclease III | 0.39 | CCNA_03352 | | YebC/PmpR transcriptional regulator | low | > 67 |
| Caulobacter crescentus NA1000 | 0.51 | CCNA_03847 | | endonuclease III | 0.39 | CCNA_03352 | | YebC/PmpR transcriptional regulator | low | > 66 |
| Phocaeicola vulgatus CL09T03C04 | 0.45 | HMPREF1058_RS15245 | | endonuclease III | 0.29 | HMPREF1058_RS03510 | | YebC/PmpR family DNA-binding transcriptional regulator | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.45 | ABI39_RS11275 | | endonuclease III | 0.29 | ABI39_RS17640 | | YebC/PmpR family DNA-binding transcriptional regulator | low | > 72 |
| Bacteroides ovatus ATCC 8483 | 0.44 | BACOVA_04414 | | endonuclease III | 0.29 | BACOVA_02249 | | DNA-binding regulatory protein, YebC/PmpR family | 0.39 | 68 |
| Bacteroides stercoris CC31F | 0.44 | HMPREF1181_RS05445 | | endonuclease III | 0.28 | HMPREF1181_RS16620 | | YebC/PmpR family DNA-binding transcriptional regulator | low | > 56 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.43 | CA264_14955 | | endonuclease III | 0.41 | CA264_01650 | | YebC/PmpR family DNA-binding transcriptional regulator | low | > 74 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.43 | BT1671 | | endonuclease III (NCBI ptt file) | 0.29 | BT0627 | | conserved hypothetical protein, with a conserved domain of unknown function (NCBI ptt file) | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.42 | Echvi_1263 | | endonuclease III | 0.28 | Echvi_1239 | | DNA-binding regulatory protein, YebC/PmpR family | low | > 79 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.42 | ABZR88_RS16725 | | endonuclease III | 0.28 | ABZR88_RS22270 | | YebC/PmpR family DNA-binding transcriptional regulator | — | — |
| Fusobacterium nucleatum SB010 | 0.40 | HUW76_00260 | | endonuclease III | 0.53 | HUW76_01460 | | YebC/PmpR family DNA-binding transcriptional regulator | low | > 35 |
| Parabacteroides merdae CL09T00C40 | 0.40 | HMPREF1078_RS09755 | | endonuclease III | 0.31 | HMPREF1078_RS09835 | | YebC/PmpR family DNA-binding transcriptional regulator | low | > 61 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.40 | CA265_RS00605 | | endonuclease III | 0.26 | CA265_RS15330 | | YebC/PmpR family DNA-binding transcriptional regulator | low | > 88 |
| Synechococcus elongatus PCC 7942 | 0.33 | Synpcc7942_0447 | nth | DNA-(apurinic or apyrimidinic site) lyase / endonuclease III | 0.40 | Synpcc7942_1017 | | hypothetical protein | low | > 38 |
| Alteromonas macleodii MIT1002 | 0.32 | MIT1002_01251 | | Endonuclease III | 0.31 | MIT1002_00845 | | putative transcriptional regulatory protein YeeN | low | > 70 |
| Bifidobacterium breve UCC2003 | 0.31 | BBR_RS11790 | | endonuclease III | 0.43 | BBR_RS15645 | | YebC/PmpR family DNA-binding transcriptional regulator | — | — |
Not shown: 0 genomes with orthologs for Psyr_3888 only; 7 genomes with orthologs for Psyr_1407 only