| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_1974 | | Excinuclease ABC subunit B | 1.0 | Psyr_1286 | | tyrosine recombinase XerD subunit | 0.31 | 16 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_1974 | | Excinuclease ABC subunit B | 1.00 | Psyr_1286 | | tyrosine recombinase XerD subunit | low | > 86 |
| Pseudomonas fluorescens FW300-N2E2 | 0.96 | Pf6N2E2_52 | | Excinuclease ABC subunit B | 0.91 | Pf6N2E2_3145 | | Tyrosine recombinase XerD | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.96 | AO356_21335 | | excinuclease ABC subunit B | 0.91 | AO356_06385 | | recombinase XerD | 0.25 | 67 |
| Pseudomonas simiae WCS417 | 0.96 | PS417_18685 | | excinuclease ABC subunit B | 0.93 | PS417_22895 | | tyrosine recombinase XerD | 0.33 | 17 |
| Pseudomonas fluorescens SBW25-INTG | 0.96 | PFLU_RS20655 | | excinuclease ABC subunit B | 0.92 | PFLU_RS24560 | | site-specific tyrosine recombinase XerD | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.96 | PFLU_RS20655 | | excinuclease ABC subunit B | 0.92 | PFLU_RS24560 | | site-specific tyrosine recombinase XerD | low | > 109 |
| Pseudomonas sp. RS175 | 0.95 | PFR28_02837 | | UvrABC system protein B | 0.91 | PFR28_00331 | | Tyrosine recombinase XerD | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.95 | AO353_20545 | | excinuclease ABC subunit B | 0.92 | AO353_04365 | | recombinase XerD | 0.35 | 36 |
| Pseudomonas fluorescens FW300-N1B4 | 0.95 | Pf1N1B4_26 | | Excinuclease ABC subunit B | 0.92 | Pf1N1B4_3011 | | Tyrosine recombinase XerD | low | > 87 |
| Pseudomonas fluorescens GW456-L13 | 0.94 | PfGW456L13_3959 | | Excinuclease ABC subunit B | 0.92 | PfGW456L13_1721 | | Tyrosine recombinase XerD | low | > 87 |
| Pseudomonas putida KT2440 | 0.91 | PP_1974 | | excinuclease UvrABC protein B | 0.87 | PP_1468 | | Tyrosine recombinase XerD | — | — |
| Pseudomonas stutzeri RCH2 | 0.90 | Psest_1296 | | excinuclease ABC, B subunit | 0.82 | Psest_3129 | | tyrosine recombinase XerD | 0.25 | 31 |
| Pseudomonas sp. S08-1 | 0.88 | OH686_04580 | | excinuclease ABC subunit B | 0.82 | OH686_17750 | | tyrosine recombinase XerD | low | > 80 |
| Marinobacter adhaerens HP15 | 0.76 | HP15_1372 | | excinuclease ABC subunit B | 0.58 | HP15_762 | | site-specific tyrosine recombinase XerD | low | > 73 |
| Serratia liquefaciens MT49 | 0.74 | IAI46_06550 | | excinuclease ABC subunit B | 0.59 | IAI46_20730 | | site-specific tyrosine recombinase XerD | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.73 | HER17_RS13420 | | excinuclease ABC subunit B | 0.58 | HER17_RS17890 | | site-specific tyrosine recombinase XerD | low | > 75 |
| Vibrio cholerae E7946 ATCC 55056 | 0.73 | CSW01_05185 | | excinuclease ABC subunit UvrB | 0.58 | CSW01_12250 | | site-specific tyrosine recombinase XerD | 0.44 | 30 |
| Kangiella aquimarina DSM 16071 | 0.73 | B158DRAFT_2341 | | Excinuclease ABC subunit B | 0.61 | B158DRAFT_2265 | | tyrosine recombinase XerD | low | > 40 |
| Rahnella sp. WP5 | 0.72 | EX31_RS23720 | | excinuclease ABC subunit B | 0.57 | EX31_RS13480 | | site-specific tyrosine recombinase XerD | low | > 89 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.72 | Xcc-8004.2034.1 | | Excinuclease ABC subunit B | 0.50 | Xcc-8004.4441.1 | | Tyrosine recombinase XerD | low | > 74 |
| Dickeya dianthicola ME23 | 0.72 | DZA65_RS08990 | | excinuclease ABC subunit B | 0.58 | DZA65_RS03485 | | site-specific tyrosine recombinase XerD | — | — |
| Erwinia tracheiphila SCR3 | 0.72 | LU632_RS09160 | uvrB | excinuclease ABC subunit B | 0.57 | LU632_RS05975 | xerD | site-specific tyrosine recombinase XerD | — | — |
| Dickeya dianthicola 67-19 | 0.72 | HGI48_RS08695 | | excinuclease ABC subunit B | 0.58 | HGI48_RS03440 | | site-specific tyrosine recombinase XerD | low | > 71 |
| Dickeya dadantii 3937 | 0.72 | DDA3937_RS08530 | | excinuclease ABC subunit B | 0.58 | DDA3937_RS03300 | | site-specific tyrosine recombinase XerD | low | > 74 |
| Shewanella oneidensis MR-1 | 0.71 | SO2506 | uvrB | excinuclease ABC, B subunit (NCBI ptt file) | 0.61 | SO0950 | xerD | integrase/recombinase XerD (NCBI ptt file) | 0.50 | 9 |
| Shewanella loihica PV-4 | 0.71 | Shew_2064 | | excinuclease ABC subunit B (RefSeq) | 0.61 | Shew_0770 | | tyrosine recombinase XerD (RefSeq) | low | > 60 |
| Shewanella sp. ANA-3 | 0.71 | Shewana3_2166 | | excinuclease ABC subunit B (RefSeq) | 0.61 | Shewana3_3331 | | tyrosine recombinase XerD (RefSeq) | low | > 73 |
| Enterobacter asburiae PDN3 | 0.71 | EX28DRAFT_2211 | | Excinuclease ABC subunit B | 0.57 | EX28DRAFT_2945 | | tyrosine recombinase XerD | low | > 76 |
| Enterobacter sp. TBS_079 | 0.71 | MPMX20_01408 | | UvrABC system protein B | 0.57 | MPMX20_03753 | | Tyrosine recombinase XerD | low | > 85 |
| Escherichia coli Nissle 1917 | 0.71 | ECOLIN_RS04150 | | excinuclease ABC subunit UvrB | 0.58 | ECOLIN_RS16125 | | site-specific tyrosine recombinase XerD | low | > 55 |
| Klebsiella michiganensis M5al | 0.71 | BWI76_RS08785 | | excinuclease ABC subunit B | 0.58 | BWI76_RS23815 | | site-specific tyrosine recombinase XerD | — | — |
| Pantoea sp. MT58 | 0.71 | IAI47_13505 | | excinuclease ABC subunit B | 0.57 | IAI47_03820 | | site-specific tyrosine recombinase XerD | low | > 76 |
| Escherichia coli BW25113 | 0.71 | b0779 | uvrB | excinuclease ABC subunit B (NCBI) | 0.58 | b2894 | xerD | site-specific tyrosine recombinase XerD (NCBI) | low | > 76 |
| Escherichia coli ECRC102 | 0.71 | NIAGMN_04425 | uvrB | excinuclease ABC subunit UvrB | 0.57 | NIAGMN_17335 | xerD | site-specific tyrosine recombinase XerD | — | — |
| Escherichia coli ECRC100 | 0.71 | OKFHMN_06380 | uvrB | excinuclease ABC subunit UvrB | 0.58 | OKFHMN_19570 | xerD | site-specific tyrosine recombinase XerD | low | > 80 |
| Escherichia coli ECRC98 | 0.71 | JDDGAC_10015 | uvrB | excinuclease ABC subunit UvrB | 0.58 | JDDGAC_23210 | xerD | site-specific tyrosine recombinase XerD | — | — |
| Escherichia coli ECRC99 | 0.71 | KEDOAH_21530 | uvrB | excinuclease ABC subunit UvrB | 0.58 | KEDOAH_08570 | xerD | site-specific tyrosine recombinase XerD | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.71 | OHPLBJKB_02934 | | UvrABC system protein B | 0.58 | OHPLBJKB_00821 | | Tyrosine recombinase XerD | low | > 73 |
| Escherichia coli BL21 | 0.71 | ECD_00746 | | exision nuclease of nucleotide excision repair, DNA damage recognition component | 0.58 | ECD_02726 | | site-specific tyrosine recombinase | low | > 61 |
| Escherichia coli ECRC62 | 0.71 | BNILDI_21020 | uvrB | excinuclease ABC subunit UvrB | 0.58 | BNILDI_10025 | xerD | site-specific tyrosine recombinase XerD | low | > 75 |
| Escherichia coli ECOR27 | 0.71 | NOLOHH_22750 | uvrB | excinuclease ABC subunit UvrB | 0.58 | NOLOHH_11495 | xerD | site-specific tyrosine recombinase XerD | low | > 75 |
| Escherichia coli ECRC101 | 0.71 | MCAODC_25595 | uvrB | excinuclease ABC subunit UvrB | 0.58 | MCAODC_10090 | xerD | site-specific tyrosine recombinase XerD | — | — |
| Escherichia fergusonii Becca | 0.70 | EFB2_03326 | | UvrABC system protein B | 0.58 | EFB2_01007 | | Tyrosine recombinase XerD | low | > 86 |
| Escherichia coli ECOR38 | 0.70 | HEPCGN_01660 | uvrB | excinuclease ABC subunit UvrB | 0.58 | HEPCGN_18860 | xerD | site-specific tyrosine recombinase XerD | low | > 87 |
| Lysobacter sp. OAE881 | 0.70 | ABIE51_RS15310 | | excinuclease ABC subunit UvrB | 0.55 | ABIE51_RS04495 | | site-specific tyrosine recombinase XerD | 0.74 | 51 |
| Dyella japonica UNC79MFTsu3.2 | 0.70 | ABZR86_RS09750 | | excinuclease ABC subunit UvrB | 0.45 | ABZR86_RS19225 | | site-specific tyrosine recombinase XerD | 0.70 | 24 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.70 | GFF675 | | Excinuclease ABC subunit B | 0.58 | GFF2991 | | Tyrosine recombinase XerD | low | > 78 |
| Shewanella amazonensis SB2B | 0.70 | Sama_1828 | | excinuclease ABC subunit B (RefSeq) | 0.56 | Sama_2739 | | integrase/recombinase XerD (RefSeq) | 0.29 | 59 |
| Rhodanobacter denitrificans FW104-10B01 | 0.70 | LRK54_RS14235 | | excinuclease ABC subunit UvrB | 0.45 | LRK54_RS04735 | | site-specific tyrosine recombinase XerD | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.70 | LRK55_RS13955 | | excinuclease ABC subunit UvrB | 0.45 | LRK55_RS04515 | | site-specific tyrosine recombinase XerD | low | > 63 |
| Dechlorosoma suillum PS | 0.69 | Dsui_2434 | | excinuclease ABC, B subunit | 0.53 | Dsui_1217 | | tyrosine recombinase XerD | 0.61 | 23 |
| Cupriavidus basilensis FW507-4G11 | 0.69 | RR42_RS05995 | | excinuclease ABC subunit B | 0.49 | RR42_RS03345 | | recombinase XerD | low | > 128 |
| Alteromonas macleodii MIT1002 | 0.69 | MIT1002_01261 | | Excinuclease ABC subunit B | 0.54 | MIT1002_00786 | | Tyrosine recombinase XerD | low | > 70 |
| Rhodanobacter sp. FW510-T8 | 0.69 | OKGIIK_03100 | uvrB | excinuclease ABC subunit UvrB | 0.45 | OKGIIK_11520 | xerD | site-specific tyrosine recombinase XerD | low | > 52 |
| Acinetobacter radioresistens SK82 | 0.69 | MPMX26_02142 | | UvrABC system protein B | 0.49 | MPMX26_00169 | | Tyrosine recombinase XerD | — | — |
| Ralstonia sp. UNC404CL21Col | 0.69 | ABZR87_RS09940 | | excinuclease ABC subunit UvrB | 0.46 | ABZR87_RS00795 | | site-specific tyrosine recombinase XerD | 0.60 | 70 |
| Ralstonia solanacearum PSI07 | 0.68 | RPSI07_RS19240 | | excinuclease ABC subunit UvrB | 0.50 | RPSI07_RS12160 | | site-specific tyrosine recombinase XerD | low | > 81 |
| Ralstonia solanacearum UW163 | 0.68 | UW163_RS11690 | | excinuclease ABC subunit UvrB | 0.49 | UW163_RS08485 | | site-specific tyrosine recombinase XerD | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.68 | RALBFv3_RS14225 | | excinuclease ABC subunit UvrB | 0.49 | RALBFv3_RS05140 | | site-specific tyrosine recombinase XerD | low | > 76 |
| Paraburkholderia graminis OAS925 | 0.67 | ABIE53_001645 | | excinuclease ABC subunit B | 0.53 | ABIE53_003361 | | integrase/recombinase XerD | 0.67 | 20 |
| Ralstonia solanacearum GMI1000 | 0.67 | RS_RS05005 | | UvrABC system protein B | 0.50 | RS_RS12755 | | tyrosine recombinase XerD | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.67 | H281DRAFT_04973 | | Excinuclease ABC subunit B | 0.54 | H281DRAFT_04126 | | integrase/recombinase XerD | — | — |
| Burkholderia phytofirmans PsJN | 0.67 | BPHYT_RS06905 | | excinuclease ABC subunit B | 0.54 | BPHYT_RS15950 | | tyrosine recombinase XerD | 0.37 | 62 |
| Castellaniella sp019104865 MT123 | 0.66 | ABCV34_RS05110 | | excinuclease ABC subunit UvrB | 0.50 | ABCV34_RS00515 | | site-specific tyrosine recombinase XerD | low | > 48 |
| Paraburkholderia sabiae LMG 24235 | 0.66 | QEN71_RS23870 | | excinuclease ABC subunit UvrB | 0.53 | QEN71_RS02755 | | site-specific tyrosine recombinase XerD | — | — |
| Herbaspirillum seropedicae SmR1 | 0.66 | HSERO_RS15840 | | excinuclease ABC subunit B | 0.52 | HSERO_RS04265 | | tyrosine recombinase XerD | 0.40 | 30 |
| Acidovorax sp. GW101-3H11 | 0.65 | Ac3H11_4114 | | Excinuclease ABC subunit B | 0.51 | Ac3H11_302 | | Tyrosine recombinase XerD | — | — |
| Variovorax sp. OAS795 | 0.65 | ABID97_RS13995 | | excinuclease ABC subunit UvrB | 0.51 | ABID97_RS20265 | | site-specific tyrosine recombinase XerD | low | > 91 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.65 | GFF4962 | | Excinuclease ABC subunit B | 0.47 | GFF5461 | | Tyrosine recombinase XerD | low | > 90 |
| Variovorax sp. SCN45 | 0.65 | GFF945 | | Excinuclease ABC subunit B | 0.50 | GFF2772 | | Site-specific tyrosine recombinase XerD | 0.81 | 96 |
| Azospirillum brasilense Sp245 | 0.62 | AZOBR_RS16420 | | excinuclease ABC subunit B | 0.32 | AZOBR_RS03240 | | recombinase XerD | low | > 97 |
| Caulobacter crescentus NA1000 | 0.60 | CCNA_03076 | | excinuclease ABC subunit B | 0.28 | CCNA_03101 | | site-specific tyrosine recombinase XerD | 0.58 | 19 |
| Caulobacter crescentus NA1000 Δfur | 0.60 | CCNA_03076 | | excinuclease ABC subunit B | 0.28 | CCNA_03101 | | site-specific tyrosine recombinase XerD | low | > 67 |
| Magnetospirillum magneticum AMB-1 | 0.60 | AMB_RS19255 | | excinuclease ABC subunit UvrB | 0.32 | AMB_RS19880 | | site-specific tyrosine recombinase XerD | low | > 64 |
| Azospirillum sp. SherDot2 | 0.60 | MPMX19_01038 | | UvrABC system protein B | 0.36 | MPMX19_02643 | | Tyrosine recombinase XerD | — | — |
| Dinoroseobacter shibae DFL-12 | 0.60 | Dshi_2192 | | excinuclease ABC, B subunit (RefSeq) | 0.33 | Dshi_1611 | | integrase family protein (RefSeq) | 0.63 | 14 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.59 | A4249_RS00555 | | excinuclease ABC subunit UvrB | 0.28 | A4249_RS04165 | | site-specific tyrosine recombinase XerD | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.59 | DVU1605 | uvrB | excinuclease ABC, B subunit (TIGR) | 0.38 | DVU1654 | xerD | site-specific recombinase, phage integrase family (TIGR) | low | > 55 |
| Phaeobacter inhibens DSM 17395 | 0.59 | PGA1_c26160 | | uvrABC system protein B | 0.30 | PGA1_c14060 | | tyrosine recombinase XerD | 0.36 | 24 |
| Rhodospirillum rubrum S1H | 0.59 | Rru_A1133 | | Excinuclease ABC, B subunit (NCBI) | 0.33 | Rru_A3738 | | Phage integrase (NCBI) | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.59 | DvMF_0454 | | excinuclease ABC subunit B (RefSeq) | 0.35 | DvMF_0359 | | tyrosine recombinase XerD (RefSeq) | 0.40 | 9 |
| Sphingomonas koreensis DSMZ 15582 | 0.58 | Ga0059261_3779 | | Excinuclease ABC subunit B | 0.25 | Ga0059261_3595 | | Site-specific recombinase XerD | low | > 68 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.56 | CA265_RS19430 | | excinuclease ABC subunit B | 0.35 | CA265_RS09520 | | site-specific tyrosine recombinase XerD | 0.37 | 28 |
| Parabacteroides merdae CL09T00C40 | 0.56 | HMPREF1078_RS15855 | | excinuclease ABC subunit UvrB | 0.39 | HMPREF1078_RS04705 | | site-specific tyrosine recombinase XerD | low | > 61 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.55 | ABZR88_RS18110 | | excinuclease ABC subunit UvrB | 0.34 | ABZR88_RS10220 | | site-specific tyrosine recombinase XerD | low | > 71 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.55 | Echvi_1215 | | excinuclease ABC, B subunit | 0.34 | Echvi_1809 | | tyrosine recombinase XerD | low | > 79 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.54 | CA264_19110 | | excinuclease ABC subunit B | 0.37 | CA264_00850 | | site-specific tyrosine recombinase XerD | — | — |
| Bacteroides stercoris CC31F | 0.52 | HMPREF1181_RS15225 | | excinuclease ABC subunit UvrB | 0.34 | HMPREF1181_RS01250 | | site-specific tyrosine recombinase XerD | low | > 56 |
| Phocaeicola dorei CL03T12C01 | 0.52 | ABI39_RS15300 | | excinuclease ABC subunit UvrB | 0.37 | ABI39_RS07000 | | site-specific tyrosine recombinase XerD | low | > 72 |
| Phocaeicola vulgatus CL09T03C04 | 0.52 | HMPREF1058_RS01765 | | excinuclease ABC subunit UvrB | 0.38 | HMPREF1058_RS09680 | | site-specific tyrosine recombinase XerD | 0.64 | 59 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.52 | BT0570 | | excinuclease ABC subunit B (NCBI ptt file) | 0.36 | BT2843 | | integrase (NCBI ptt file) | low | > 81 |
| Bacteroides ovatus ATCC 8483 | 0.52 | BACOVA_03714 | | excinuclease ABC, B subunit | 0.37 | BACOVA_02123 | | tyrosine recombinase XerD | low | > 94 |
Not shown: 6 genomes with orthologs for Psyr_1974 only; 5 genomes with orthologs for Psyr_1286 only