| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_1974 | | Excinuclease ABC subunit B | 1.0 | Psyr_0201 | | ATP-dependent DNA helicase RecG | 0.53 | 6 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_1974 | | Excinuclease ABC subunit B | 1.00 | Psyr_0201 | | ATP-dependent DNA helicase RecG | 0.55 | 12 |
| Pseudomonas fluorescens FW300-N2E2 | 0.96 | Pf6N2E2_52 | | Excinuclease ABC subunit B | 0.88 | Pf6N2E2_4352 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | 0.42 | 17 |
| Pseudomonas fluorescens FW300-N2C3 | 0.96 | AO356_21335 | | excinuclease ABC subunit B | 0.88 | AO356_12380 | | ATP-dependent DNA helicase RecG | 0.38 | 28 |
| Pseudomonas simiae WCS417 | 0.96 | PS417_18685 | | excinuclease ABC subunit B | 0.90 | PS417_27870 | | ATP-dependent DNA helicase RecG | 0.29 | 23 |
| Pseudomonas fluorescens SBW25 | 0.96 | PFLU_RS20655 | | excinuclease ABC subunit B | 0.90 | PFLU_RS29550 | | ATP-dependent DNA helicase RecG | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.96 | PFLU_RS20655 | | excinuclease ABC subunit B | 0.90 | PFLU_RS29550 | | ATP-dependent DNA helicase RecG | low | > 109 |
| Pseudomonas sp. RS175 | 0.95 | PFR28_02837 | | UvrABC system protein B | 0.88 | PFR28_04435 | | ATP-dependent DNA helicase RecG | 0.26 | 19 |
| Pseudomonas fluorescens FW300-N2E3 | 0.95 | AO353_20545 | | excinuclease ABC subunit B | 0.90 | AO353_09320 | | ATP-dependent DNA helicase RecG | 0.36 | 34 |
| Pseudomonas fluorescens FW300-N1B4 | 0.95 | Pf1N1B4_26 | | Excinuclease ABC subunit B | 0.90 | Pf1N1B4_2105 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | low | > 87 |
| Pseudomonas fluorescens GW456-L13 | 0.94 | PfGW456L13_3959 | | Excinuclease ABC subunit B | 0.90 | PfGW456L13_772 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | low | > 87 |
| Pseudomonas putida KT2440 | 0.91 | PP_1974 | | excinuclease UvrABC protein B | 0.89 | PP_5310 | | junction-specific ATP-dependent DNA helicase | — | — |
| Pseudomonas stutzeri RCH2 | 0.90 | Psest_1296 | | excinuclease ABC, B subunit | 0.86 | Psest_4192 | | ATP-dependent DNA helicase RecG | — | — |
| Pseudomonas sp. S08-1 | 0.88 | OH686_04580 | | excinuclease ABC subunit B | 0.84 | OH686_13505 | | ATP-dependent DNA helicase RecG | low | > 80 |
| Marinobacter adhaerens HP15 | 0.76 | HP15_1372 | | excinuclease ABC subunit B | 0.60 | HP15_309 | | DNA helicase, ATP-dependent, RecG | 0.81 | 5 |
| Serratia liquefaciens MT49 | 0.74 | IAI46_06550 | | excinuclease ABC subunit B | 0.55 | IAI46_24905 | | ATP-dependent DNA helicase RecG | 0.60 | 20 |
| Pectobacterium carotovorum WPP14 | 0.73 | HER17_RS13420 | | excinuclease ABC subunit B | 0.55 | HER17_RS21395 | | ATP-dependent DNA helicase RecG | low | > 75 |
| Vibrio cholerae E7946 ATCC 55056 | 0.73 | CSW01_05185 | | excinuclease ABC subunit UvrB | 0.54 | CSW01_13680 | | DNA helicase RecG | 0.51 | 14 |
| Kangiella aquimarina DSM 16071 | 0.73 | B158DRAFT_2341 | | Excinuclease ABC subunit B | 0.50 | B158DRAFT_0566 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | 0.73 | 6 |
| Rahnella sp. WP5 | 0.72 | EX31_RS23720 | | excinuclease ABC subunit B | 0.55 | EX31_RS15820 | | ATP-dependent DNA helicase RecG | low | > 89 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.72 | Xcc-8004.2034.1 | | Excinuclease ABC subunit B | 0.52 | Xcc-8004.1204.1 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | low | > 74 |
| Dickeya dianthicola ME23 | 0.72 | DZA65_RS08990 | | excinuclease ABC subunit B | 0.55 | DZA65_RS22160 | | ATP-dependent DNA helicase RecG | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.72 | LU632_RS09160 | uvrB | excinuclease ABC subunit B | 0.56 | LU632_RS22190 | recG | ATP-dependent DNA helicase RecG | low | > 74 |
| Dickeya dadantii 3937 | 0.72 | DDA3937_RS08530 | | excinuclease ABC subunit B | 0.55 | DDA3937_RS00170 | | ATP-dependent DNA helicase RecG | 0.46 | 69 |
| Dickeya dianthicola 67-19 | 0.72 | HGI48_RS08695 | | excinuclease ABC subunit B | 0.55 | HGI48_RS21190 | | ATP-dependent DNA helicase RecG | low | > 71 |
| Shewanella oneidensis MR-1 | 0.71 | SO2506 | uvrB | excinuclease ABC, B subunit (NCBI ptt file) | 0.56 | SO4364 | recG | ATP-dependent DNA helicase RecG (NCBI ptt file) | 0.66 | 3 |
| Shewanella loihica PV-4 | 0.71 | Shew_2064 | | excinuclease ABC subunit B (RefSeq) | 0.56 | Shew_3507 | | ATP-dependent DNA helicase RecG (RefSeq) | 0.45 | 31 |
| Shewanella sp. ANA-3 | 0.71 | Shewana3_2166 | | excinuclease ABC subunit B (RefSeq) | 0.57 | Shewana3_0348 | | ATP-dependent DNA helicase RecG (RefSeq) | 0.44 | 38 |
| Enterobacter sp. TBS_079 | 0.71 | MPMX20_01408 | | UvrABC system protein B | 0.54 | MPMX20_00084 | | ATP-dependent DNA helicase RecG | 0.43 | 18 |
| Enterobacter asburiae PDN3 | 0.71 | EX28DRAFT_2211 | | Excinuclease ABC subunit B | 0.55 | EX28DRAFT_3901 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | low | > 76 |
| Pantoea sp. MT58 | 0.71 | IAI47_13505 | | excinuclease ABC subunit B | 0.55 | IAI47_00500 | | ATP-dependent DNA helicase RecG | low | > 76 |
| Escherichia coli Nissle 1917 | 0.71 | ECOLIN_RS04150 | | excinuclease ABC subunit UvrB | 0.55 | ECOLIN_RS20800 | | ATP-dependent DNA helicase RecG | low | > 55 |
| Klebsiella michiganensis M5al | 0.71 | BWI76_RS08785 | | excinuclease ABC subunit B | 0.55 | BWI76_RS27440 | | DNA helicase RecG | low | > 92 |
| Escherichia coli ECRC98 | 0.71 | JDDGAC_10015 | uvrB | excinuclease ABC subunit UvrB | 0.55 | JDDGAC_19170 | recG | ATP-dependent DNA helicase RecG | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.71 | OHPLBJKB_02934 | | UvrABC system protein B | 0.55 | OHPLBJKB_00049 | | ATP-dependent DNA helicase RecG | low | > 73 |
| Escherichia coli ECRC62 | 0.71 | BNILDI_21020 | uvrB | excinuclease ABC subunit UvrB | 0.55 | BNILDI_04090 | recG | ATP-dependent DNA helicase RecG | low | > 75 |
| Escherichia coli ECRC101 | 0.71 | MCAODC_25595 | uvrB | excinuclease ABC subunit UvrB | 0.55 | MCAODC_06055 | recG | ATP-dependent DNA helicase RecG | 0.43 | 64 |
| Escherichia coli BL21 | 0.71 | ECD_00746 | | exision nuclease of nucleotide excision repair, DNA damage recognition component | 0.55 | ECD_03509 | | ATP-dependent DNA helicase | 0.79 | 3 |
| Escherichia coli ECRC99 | 0.71 | KEDOAH_21530 | uvrB | excinuclease ABC subunit UvrB | 0.55 | KEDOAH_12600 | recG | ATP-dependent DNA helicase RecG | — | — |
| Escherichia coli ECRC100 | 0.71 | OKFHMN_06380 | uvrB | excinuclease ABC subunit UvrB | 0.55 | OKFHMN_15545 | recG | ATP-dependent DNA helicase RecG | low | > 80 |
| Escherichia coli ECOR27 | 0.71 | NOLOHH_22750 | uvrB | excinuclease ABC subunit UvrB | 0.55 | NOLOHH_07425 | recG | ATP-dependent DNA helicase RecG | low | > 75 |
| Escherichia coli BW25113 | 0.71 | b0779 | uvrB | excinuclease ABC subunit B (NCBI) | 0.55 | b3652 | recG | ATP-dependent DNA helicase (NCBI) | 0.30 | 22 |
| Escherichia coli ECRC102 | 0.71 | NIAGMN_04425 | uvrB | excinuclease ABC subunit UvrB | 0.55 | NIAGMN_13305 | recG | ATP-dependent DNA helicase RecG | — | — |
| Escherichia coli ECOR38 | 0.70 | HEPCGN_01660 | uvrB | excinuclease ABC subunit UvrB | 0.55 | HEPCGN_14365 | recG | ATP-dependent DNA helicase RecG | low | > 87 |
| Escherichia fergusonii Becca | 0.70 | EFB2_03326 | | UvrABC system protein B | 0.55 | EFB2_00136 | | ATP-dependent DNA helicase RecG | low | > 86 |
| Lysobacter sp. OAE881 | 0.70 | ABIE51_RS15310 | | excinuclease ABC subunit UvrB | 0.53 | ABIE51_RS17230 | | ATP-dependent DNA helicase RecG | 0.83 | 10 |
| Dyella japonica UNC79MFTsu3.2 | 0.70 | ABZR86_RS09750 | | excinuclease ABC subunit UvrB | 0.55 | ABZR86_RS11840 | | ATP-dependent DNA helicase RecG | 0.96 | 2 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.70 | GFF675 | | Excinuclease ABC subunit B | 0.55 | GFF355 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | low | > 78 |
| Shewanella amazonensis SB2B | 0.70 | Sama_1828 | | excinuclease ABC subunit B (RefSeq) | 0.57 | Sama_3375 | | ATP-dependent DNA helicase RecG (RefSeq) | 0.48 | 12 |
| Rhodanobacter denitrificans FW104-10B01 | 0.70 | LRK54_RS14235 | | excinuclease ABC subunit UvrB | 0.56 | LRK54_RS11805 | | ATP-dependent DNA helicase RecG | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.70 | LRK55_RS13955 | | excinuclease ABC subunit UvrB | 0.56 | LRK55_RS11530 | | ATP-dependent DNA helicase RecG | low | > 63 |
| Dechlorosoma suillum PS | 0.69 | Dsui_2434 | | excinuclease ABC, B subunit | 0.45 | Dsui_0311 | | ATP-dependent DNA helicase RecG | 0.82 | 4 |
| Cupriavidus basilensis FW507-4G11 | 0.69 | RR42_RS05995 | | excinuclease ABC subunit B | 0.46 | RR42_RS17390 | | ATP-dependent DNA helicase RecG | 0.36 | 22 |
| Alteromonas macleodii MIT1002 | 0.69 | MIT1002_01261 | | Excinuclease ABC subunit B | 0.57 | MIT1002_00111 | | ATP-dependent DNA helicase RecG | low | > 70 |
| Acinetobacter radioresistens SK82 | 0.69 | MPMX26_02142 | | UvrABC system protein B | 0.55 | MPMX26_02732 | | ATP-dependent DNA helicase RecG | low | > 36 |
| Rhodanobacter sp. FW510-T8 | 0.69 | OKGIIK_03100 | uvrB | excinuclease ABC subunit UvrB | 0.54 | OKGIIK_12090 | recG | ATP-dependent DNA helicase RecG | low | > 52 |
| Ralstonia sp. UNC404CL21Col | 0.69 | ABZR87_RS09940 | | excinuclease ABC subunit UvrB | 0.46 | ABZR87_RS01270 | | ATP-dependent DNA helicase RecG | 0.70 | 14 |
| Ralstonia solanacearum PSI07 | 0.68 | RPSI07_RS19240 | | excinuclease ABC subunit UvrB | 0.46 | RPSI07_RS11625 | | DNA helicase RecG | low | > 81 |
| Ralstonia solanacearum UW163 | 0.68 | UW163_RS11690 | | excinuclease ABC subunit UvrB | 0.46 | UW163_RS07950 | | DNA helicase RecG | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.68 | RALBFv3_RS14225 | | excinuclease ABC subunit UvrB | 0.46 | RALBFv3_RS05675 | | DNA helicase RecG | low | > 76 |
| Paraburkholderia graminis OAS925 | 0.67 | ABIE53_001645 | | excinuclease ABC subunit B | 0.47 | ABIE53_000833 | | ATP-dependent DNA helicase RecG | low | > 113 |
| Ralstonia solanacearum GMI1000 | 0.67 | RS_RS05005 | | UvrABC system protein B | 0.46 | RS_RS13565 | | DNA helicase RecG | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.67 | H281DRAFT_04973 | | Excinuclease ABC subunit B | 0.47 | H281DRAFT_04672 | | ATP-dependent DNA helicase RecG | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.67 | BPHYT_RS06905 | | excinuclease ABC subunit B | 0.48 | BPHYT_RS03400 | | ATP-dependent DNA helicase RecG | low | > 109 |
| Castellaniella sp019104865 MT123 | 0.66 | ABCV34_RS05110 | | excinuclease ABC subunit UvrB | 0.43 | ABCV34_RS03570 | | ATP-dependent DNA helicase RecG | low | > 48 |
| Paraburkholderia sabiae LMG 24235 | 0.66 | QEN71_RS23870 | | excinuclease ABC subunit UvrB | 0.47 | QEN71_RS26630 | | ATP-dependent DNA helicase RecG | — | — |
| Herbaspirillum seropedicae SmR1 | 0.66 | HSERO_RS15840 | | excinuclease ABC subunit B | 0.46 | HSERO_RS06165 | | ATP-dependent DNA helicase RecG | 0.54 | 7 |
| Acidovorax sp. GW101-3H11 | 0.65 | Ac3H11_4114 | | Excinuclease ABC subunit B | 0.44 | Ac3H11_781 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | low | > 79 |
| Variovorax sp. OAS795 | 0.65 | ABID97_RS13995 | | excinuclease ABC subunit UvrB | 0.41 | ABID97_RS01575 | | ATP-dependent DNA helicase RecG | 0.42 | 36 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.65 | GFF4962 | | Excinuclease ABC subunit B | 0.43 | GFF2802 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | 0.66 | 27 |
| Variovorax sp. SCN45 | 0.65 | GFF945 | | Excinuclease ABC subunit B | 0.39 | GFF5538 | | ATP-dependent DNA helicase RecG (EC 3.6.4.12) | 0.83 | 74 |
| Azospirillum brasilense Sp245 | 0.62 | AZOBR_RS16420 | | excinuclease ABC subunit B | 0.34 | AZOBR_RS09850 | | ATP-dependent DNA helicase RecG | low | > 97 |
| Caulobacter crescentus NA1000 | 0.60 | CCNA_03076 | | excinuclease ABC subunit B | 0.33 | CCNA_01504 | | ATP-dependent DNA helicase recG | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.60 | CCNA_03076 | | excinuclease ABC subunit B | 0.33 | CCNA_01504 | | ATP-dependent DNA helicase recG | low | > 67 |
| Magnetospirillum magneticum AMB-1 | 0.60 | AMB_RS19255 | | excinuclease ABC subunit UvrB | 0.35 | AMB_RS12400 | | ATP-dependent DNA helicase RecG | — | — |
| Azospirillum sp. SherDot2 | 0.60 | MPMX19_01038 | | UvrABC system protein B | 0.33 | MPMX19_00951 | | ATP-dependent DNA helicase RecG | — | — |
| Dinoroseobacter shibae DFL-12 | 0.60 | Dshi_2192 | | excinuclease ABC, B subunit (RefSeq) | 0.32 | Dshi_1510 | | DEAD/DEAH box helicase domain protein (RefSeq) | 0.68 | 11 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.59 | A4249_RS00555 | | excinuclease ABC subunit UvrB | 0.29 | A4249_RS04765 | | ATP-dependent DNA helicase RecG | low | > 48 |
| Phaeobacter inhibens DSM 17395 | 0.59 | PGA1_c26160 | | uvrABC system protein B | 0.32 | PGA1_c14380 | | ATP-dependent DNA helicase RecG | 0.66 | 6 |
| Rhodospirillum rubrum S1H | 0.59 | Rru_A1133 | | Excinuclease ABC, B subunit (NCBI) | 0.29 | Rru_A1728 | | ATP-dependent DNA helicase RecG (NCBI) | — | — |
| Synechococcus elongatus PCC 7942 | 0.59 | Synpcc7942_0563 | uvrB | excinuclease ABC subunit B | 0.34 | Synpcc7942_1079 | recG | ATP-dependent DNA helicase RecG | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.58 | Ga0059261_3779 | | Excinuclease ABC subunit B | 0.33 | Ga0059261_0958 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | 0.65 | 8 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.56 | CA265_RS19430 | | excinuclease ABC subunit B | 0.33 | CA265_RS22835 | | ATP-dependent DNA helicase RecG | 0.82 | 10 |
| Parabacteroides merdae CL09T00C40 | 0.56 | HMPREF1078_RS15855 | | excinuclease ABC subunit UvrB | 0.33 | HMPREF1078_RS12765 | | ATP-dependent DNA helicase RecG | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.55 | ABZR88_RS18110 | | excinuclease ABC subunit UvrB | 0.32 | ABZR88_RS17240 | | ATP-dependent DNA helicase RecG | low | > 71 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.55 | Echvi_1215 | | excinuclease ABC, B subunit | 0.31 | Echvi_1162 | | ATP-dependent DNA helicase RecG | 0.83 | 9 |
| Fusobacterium nucleatum SB010 | 0.55 | HUW76_02625 | | excinuclease ABC subunit UvrB | 0.35 | HUW76_01465 | | ATP-dependent DNA helicase RecG | low | > 35 |
| Mycobacterium tuberculosis H37Rv | 0.54 | Rv1633 | | Probable excinuclease ABC (subunit B-helicase) UvrB | 0.24 | Rv2973c | | Probable ATP-dependent DNA helicase RecG | low | > 58 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.54 | CA264_19110 | | excinuclease ABC subunit B | 0.33 | CA264_15020 | | DNA helicase RecG | low | > 74 |
| Phocaeicola dorei CL03T12C01 | 0.52 | ABI39_RS15300 | | excinuclease ABC subunit UvrB | 0.35 | ABI39_RS02470 | | ATP-dependent DNA helicase RecG | low | > 72 |
| Bacteroides stercoris CC31F | 0.52 | HMPREF1181_RS15225 | | excinuclease ABC subunit UvrB | 0.34 | HMPREF1181_RS06615 | | ATP-dependent DNA helicase RecG | low | > 56 |
| Phocaeicola vulgatus CL09T03C04 | 0.52 | HMPREF1058_RS01765 | | excinuclease ABC subunit UvrB | 0.35 | HMPREF1058_RS08295 | | ATP-dependent DNA helicase RecG | low | > 67 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.52 | BT0570 | | excinuclease ABC subunit B (NCBI ptt file) | 0.33 | BT3924 | | ATP-dependent DNA helicase recG (NCBI ptt file) | — | — |
Not shown: 6 genomes with orthologs for Psyr_1974 only; 5 genomes with orthologs for Psyr_0201 only