| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas fluorescens FW300-N2E2 | 1.0 | Pf6N2E2_5594 | | Endonuclease III (EC 4.2.99.18) | 1.0 | Pf6N2E2_4888 | | Excinuclease ABC subunit A | 0.29 | 16 |
| Pseudomonas fluorescens FW300-N2C3 | 0.99 | AO356_18345 | | endonuclease III | 1.00 | AO356_14785 | | ABC-ATPase UvrA | low | > 104 |
| Pseudomonas sp. RS175 | 0.98 | PFR28_03349 | | Endonuclease III | 0.99 | PFR28_03974 | | UvrABC system protein A | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.97 | Pf1N1B4_739 | | Endonuclease III (EC 4.2.99.18) | 0.98 | Pf1N1B4_2611 | | Excinuclease ABC subunit A | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.96 | AO353_04085 | | endonuclease III | 0.97 | AO353_06855 | | ABC-ATPase UvrA | 0.25 | 35 |
| Pseudomonas fluorescens GW456-L13 | 0.96 | PfGW456L13_1753 | | Endonuclease III (EC 4.2.99.18) | 0.97 | PfGW456L13_1283 | | Excinuclease ABC subunit A | 0.40 | 10 |
| Pseudomonas fluorescens SBW25-INTG | 0.95 | PFLU_RS05740 | | endonuclease III | 0.97 | PFLU_RS27025 | | excinuclease ABC subunit UvrA | 0.27 | 1 |
| Pseudomonas fluorescens SBW25 | 0.95 | PFLU_RS05740 | | endonuclease III | 0.97 | PFLU_RS27025 | | excinuclease ABC subunit UvrA | low | > 109 |
| Pseudomonas simiae WCS417 | 0.95 | PS417_05655 | | endonuclease III | 0.97 | PS417_25395 | | excinuclease ABC subunit A | low | > 88 |
| Pseudomonas putida KT2440 | 0.93 | PP_1092 | | DNA glycosylase/apyrimidinic (AP) lyase specific for damaged pyrimidinic sites | 0.93 | PP_0483 | | excinuclease (uvrABC system protein A) | — | — |
| Pseudomonas sp. S08-1 | 0.92 | OH686_03910 | | endonuclease III | 0.92 | OH686_15495 | | excinuclease ABC subunit A | low | > 80 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.91 | Psyr_3888 | | endonuclease III / DNA-(apurinic or apyrimidinic site) lyase | 0.96 | Psyr_4520 | | Excinuclease ABC subunit A | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.91 | Psyr_3888 | | endonuclease III / DNA-(apurinic or apyrimidinic site) lyase | 0.96 | Psyr_4520 | | Excinuclease ABC subunit A | low | > 86 |
| Pseudomonas stutzeri RCH2 | 0.89 | Psest_3118 | | endonuclease III | 0.90 | Psest_3576 | | excinuclease ABC, A subunit | 0.33 | 18 |
| Marinobacter adhaerens HP15 | 0.81 | HP15_1285 | | endonuclease III | 0.76 | HP15_406 | | excinuclease ABC, ATPase subunit (A) | low | > 73 |
| Kangiella aquimarina DSM 16071 | 0.80 | B158DRAFT_2365 | | DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) | 0.76 | B158DRAFT_0885 | | excinuclease ABC, A subunit | low | > 40 |
| Escherichia coli ECRC101 | 0.75 | MCAODC_17885 | nth | endonuclease III | 0.77 | MCAODC_03405 | uvrA | excinuclease ABC subunit UvrA | low | > 87 |
| Escherichia coli ECRC99 | 0.75 | KEDOAH_00580 | nth | endonuclease III | 0.77 | KEDOAH_15255 | uvrA | excinuclease ABC subunit UvrA | — | — |
| Escherichia coli ECRC98 | 0.75 | JDDGAC_02115 | nth | endonuclease III | 0.77 | JDDGAC_16530 | uvrA | excinuclease ABC subunit UvrA | low | > 86 |
| Escherichia coli ECRC100 | 0.75 | OKFHMN_27525 | nth | endonuclease III | 0.77 | OKFHMN_12895 | uvrA | excinuclease ABC subunit UvrA | low | > 80 |
| Escherichia coli ECRC102 | 0.75 | NIAGMN_00540 | nth | endonuclease III | 0.77 | NIAGMN_10740 | uvrA | excinuclease ABC subunit UvrA | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.75 | OHPLBJKB_02093 | | Endonuclease III | 0.77 | OHPLBJKB_03983 | | UvrABC system protein A | low | > 73 |
| Escherichia coli Nissle 1917 | 0.75 | ECOLIN_RS09110 | | endonuclease III | 0.77 | ECOLIN_RS23485 | | excinuclease ABC subunit UvrA | — | — |
| Escherichia coli ECOR38 | 0.75 | HEPCGN_05910 | nth | endonuclease III | 0.77 | HEPCGN_11510 | uvrA | excinuclease ABC subunit UvrA | low | > 87 |
| Escherichia coli ECRC62 | 0.75 | BNILDI_16835 | nth | endonuclease III | 0.77 | BNILDI_06380 | uvrA | excinuclease ABC subunit UvrA | low | > 75 |
| Escherichia coli ECOR27 | 0.75 | NOLOHH_18045 | nth | endonuclease III | 0.77 | NOLOHH_05145 | uvrA | excinuclease ABC subunit UvrA | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.75 | GFF3641 | | Endonuclease III (EC 4.2.99.18) | 0.77 | GFF1429 | | Excinuclease ABC subunit A | low | > 78 |
| Escherichia coli BL21 | 0.75 | ECD_01603 | | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) | 0.77 | ECD_03930 | | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC | — | — |
| Escherichia coli BW25113 | 0.75 | b1633 | nth | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) (NCBI) | 0.77 | b4058 | uvrA | excinuclease ABC subunit A (NCBI) | low | > 76 |
| Escherichia fergusonii Becca | 0.75 | EFB2_02359 | | Endonuclease III | 0.77 | EFB2_04533 | | UvrABC system protein A | low | > 86 |
| Pantoea sp. MT58 | 0.74 | IAI47_10475 | | endonuclease III | 0.76 | IAI47_17815 | | excinuclease ABC subunit UvrA | low | > 76 |
| Klebsiella michiganensis M5al | 0.74 | BWI76_RS16385 | | endonuclease III | 0.77 | BWI76_RS01950 | | excinuclease ABC subunit A | — | — |
| Pectobacterium carotovorum WPP14 | 0.74 | HER17_RS10860 | | endonuclease III | 0.76 | HER17_RS03550 | | excinuclease ABC subunit UvrA | low | > 75 |
| Herbaspirillum seropedicae SmR1 | 0.74 | HSERO_RS08070 | | endonuclease IV | 0.70 | HSERO_RS19810 | | excinuclease ABC subunit A | low | > 78 |
| Erwinia tracheiphila SCR3 | 0.74 | LU632_RS11305 | nth | endonuclease III | 0.75 | LU632_RS23685 | uvrA | excinuclease ABC subunit UvrA | low | > 74 |
| Enterobacter asburiae PDN3 | 0.74 | EX28DRAFT_1629 | | DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) | 0.76 | EX28DRAFT_4246 | | excinuclease ABC, A subunit | low | > 76 |
| Serratia liquefaciens MT49 | 0.74 | IAI46_11455 | | endonuclease III | 0.76 | IAI46_22905 | | excinuclease ABC subunit UvrA | low | > 86 |
| Enterobacter sp. TBS_079 | 0.74 | MPMX20_02005 | | Endonuclease III | 0.76 | MPMX20_00276 | | UvrABC system protein A | low | > 85 |
| Shewanella oneidensis MR-1 | 0.74 | SO2514 | nth | endonuclease III (NCBI ptt file) | 0.75 | SO4030 | uvrA | excinuclease ABC, A subunit (NCBI ptt file) | low | > 76 |
| Rahnella sp. WP5 | 0.73 | EX31_RS06590 | | endonuclease III | 0.77 | EX31_RS11990 | | excinuclease ABC subunit UvrA | 0.27 | 44 |
| Shewanella amazonensis SB2B | 0.73 | Sama_1836 | | endonuclease III (RefSeq) | 0.75 | Sama_0514 | | excinuclease ABC, A subunit (RefSeq) | low | > 62 |
| Vibrio cholerae E7946 ATCC 55056 | 0.73 | CSW01_05145 | | endonuclease III | 0.76 | CSW01_02080 | | UvrABC system protein A | low | > 62 |
| Acinetobacter radioresistens SK82 | 0.72 | MPMX26_02306 | | Endonuclease III | 0.69 | MPMX26_02892 | | UvrABC system protein A | low | > 36 |
| Shewanella sp. ANA-3 | 0.72 | Shewana3_2174 | | DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (RefSeq) | 0.75 | Shewana3_3592 | | excinuclease ABC subunit A (RefSeq) | low | > 73 |
| Dickeya dianthicola ME23 | 0.72 | DZA65_RS11025 | | endonuclease III | 0.77 | DZA65_RS18735 | | excinuclease ABC subunit UvrA | low | > 75 |
| Dickeya dianthicola 67-19 | 0.72 | HGI48_RS10545 | | endonuclease III | 0.77 | HGI48_RS17610 | | excinuclease ABC subunit UvrA | 0.58 | 6 |
| Rhodanobacter denitrificans FW104-10B01 | 0.72 | LRK54_RS01850 | | endonuclease III | 0.71 | LRK54_RS15210 | | excinuclease ABC subunit UvrA | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.72 | LRK55_RS01640 | | endonuclease III | 0.71 | LRK55_RS14925 | | excinuclease ABC subunit UvrA | low | > 63 |
| Dechlorosoma suillum PS | 0.71 | Dsui_2985 | | endonuclease III | 0.73 | Dsui_1622 | | excinuclease ABC, A subunit | low | > 51 |
| Cupriavidus basilensis FW507-4G11 | 0.71 | RR42_RS05970 | | endonuclease III | 0.69 | RR42_RS02145 | | excinuclease ABC subunit A | low | > 128 |
| Dyella japonica UNC79MFTsu3.2 | 0.71 | ABZR86_RS08185 | | endonuclease III | 0.72 | ABZR86_RS00910 | | excinuclease ABC subunit UvrA | low | > 74 |
| Dickeya dadantii 3937 | 0.71 | DDA3937_RS10545 | | endonuclease III | 0.77 | DDA3937_RS17605 | | excinuclease ABC subunit UvrA | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.71 | OKGIIK_04675 | nth | endonuclease III | 0.71 | OKGIIK_03980 | uvrA | excinuclease ABC subunit UvrA | low | > 52 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.70 | Xcc-8004.3350.1 | | Endonuclease III (EC 4.2.99.18) | 0.72 | Xcc-8004.3830.1 | | Excinuclease ABC subunit A | low | > 74 |
| Shewanella loihica PV-4 | 0.70 | Shew_2072 | | endonuclease III (RefSeq) | 0.74 | Shew_0533 | | excinuclease ABC, A subunit (RefSeq) | low | > 60 |
| Ralstonia solanacearum PSI07 | 0.70 | RPSI07_RS19265 | | endonuclease III | 0.70 | RPSI07_RS22065 | | excinuclease ABC subunit UvrA | low | > 81 |
| Ralstonia sp. UNC404CL21Col | 0.70 | ABZR87_RS09915 | | endonuclease III | 0.70 | ABZR87_RS07120 | | excinuclease ABC subunit UvrA | low | > 80 |
| Ralstonia solanacearum GMI1000 | 0.70 | RS_RS04975 | | endonuclease III | 0.70 | RS_RS02080 | | excinuclease ABC subunit UvrA | low | > 80 |
| Ralstonia solanacearum UW163 | 0.70 | UW163_RS11660 | | endonuclease III | 0.70 | UW163_RS02345 | | excinuclease ABC subunit UvrA | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.70 | RALBFv3_RS14195 | | endonuclease III | 0.70 | RALBFv3_RS11235 | | excinuclease ABC subunit UvrA | low | > 76 |
| Variovorax sp. SCN45 | 0.69 | GFF418 | | Endonuclease III (EC 4.2.99.18) | 0.66 | GFF4944 | | Excinuclease ABC subunit A | low | > 127 |
| Paraburkholderia sabiae LMG 24235 | 0.69 | QEN71_RS24560 | | endonuclease III | 0.69 | QEN71_RS01825 | | excinuclease ABC subunit UvrA | low | > 153 |
| Paraburkholderia graminis OAS925 | 0.68 | ABIE53_001423 | | endonuclease-3 | 0.69 | ABIE53_000732 | | excinuclease ABC subunit A | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.68 | H281DRAFT_00293 | | DNA-(apurinic or apyrimidinic site) lyase /endonuclease III | 0.69 | H281DRAFT_01913 | | Excinuclease ABC subunit A | low | > 103 |
| Acidovorax sp. GW101-3H11 | 0.68 | Ac3H11_1010 | | Endonuclease III (EC 4.2.99.18) | 0.65 | Ac3H11_4387 | | Excinuclease ABC subunit A | 0.46 | 27 |
| Castellaniella sp019104865 MT123 | 0.67 | ABCV34_RS08465 | | endonuclease III | 0.61 | ABCV34_RS12715 | | excinuclease ABC subunit UvrA | low | > 48 |
| Variovorax sp. OAS795 | 0.67 | ABID97_RS17315 | | endonuclease III | 0.66 | ABID97_RS04340 | | excinuclease ABC subunit UvrA | low | > 91 |
| Burkholderia phytofirmans PsJN | 0.67 | BPHYT_RS06080 | | endonuclease IV | 0.69 | BPHYT_RS02970 | | excinuclease ABC subunit A | low | > 109 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.67 | GFF4003 | | Endonuclease III (EC 4.2.99.18) | 0.66 | GFF2755 | | Excinuclease ABC subunit A | low | > 90 |
| Azospirillum sp. SherDot2 | 0.63 | MPMX19_02500 | | Endonuclease III | 0.61 | MPMX19_01152 | | UvrABC system protein A | low | > 112 |
| Azospirillum brasilense Sp245 | 0.62 | AZOBR_RS01565 | | endonuclease III | 0.60 | AZOBR_RS15370 | | excinuclease ABC subunit A | 0.64 | 9 |
| Bosea sp. OAE506 | 0.59 | ABIE41_RS03410 | | endonuclease III | 0.59 | ABIE41_RS15100 | | excinuclease ABC subunit UvrA | low | > 77 |
| Sphingomonas koreensis DSMZ 15582 | 0.59 | Ga0059261_2546 | | DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) | 0.60 | Ga0059261_0674 | | excinuclease ABC, A subunit | low | > 68 |
| Magnetospirillum magneticum AMB-1 | 0.58 | AMB_RS21105 | | endonuclease III | 0.60 | AMB_RS12410 | | excinuclease ABC subunit UvrA | low | > 64 |
| Rhodospirillum rubrum S1H | 0.58 | Rru_A0153 | | Endonuclease III/Nth (NCBI) | 0.62 | Rru_A1752 | | Excinuclease ABC, A subunit (NCBI) | low | > 58 |
| Dinoroseobacter shibae DFL-12 | 0.57 | Dshi_3023 | | endonuclease III (RefSeq) | 0.61 | Dshi_1809 | | excinuclease ABC, A subunit (RefSeq) | low | > 64 |
| Phaeobacter inhibens DSM 17395 | 0.56 | PGA1_c29040 | | endonuclease III | 0.58 | PGA1_c17370 | | uvrABC system protein A | low | > 62 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.54 | A4249_RS15000 | | endonuclease III | 0.61 | A4249_RS08575 | | excinuclease ABC subunit UvrA | 0.49 | 28 |
| Caulobacter crescentus NA1000 Δfur | 0.53 | CCNA_03847 | | endonuclease III | 0.60 | CCNA_02673 | | excinuclease ABC subunit A | low | > 67 |
| Caulobacter crescentus NA1000 | 0.53 | CCNA_03847 | | endonuclease III | 0.60 | CCNA_02673 | | excinuclease ABC subunit A | low | > 66 |
| Phocaeicola vulgatus CL09T03C04 | 0.46 | HMPREF1058_RS15245 | | endonuclease III | 0.50 | HMPREF1058_RS01735 | | excinuclease ABC subunit UvrA | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.45 | ABI39_RS11275 | | endonuclease III | 0.50 | ABI39_RS15330 | | excinuclease ABC subunit UvrA | low | > 72 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.45 | CA264_14955 | | endonuclease III | 0.50 | CA264_18100 | | ABC-ATPase UvrA | low | > 74 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.44 | Echvi_1263 | | endonuclease III | 0.51 | Echvi_1138 | | excinuclease ABC, A subunit | low | > 79 |
| Bacteroides stercoris CC31F | 0.44 | HMPREF1181_RS05445 | | endonuclease III | 0.49 | HMPREF1181_RS15185 | | excinuclease ABC subunit UvrA | low | > 56 |
| Bacteroides ovatus ATCC 8483 | 0.44 | BACOVA_04414 | | endonuclease III | 0.50 | BACOVA_03703 | | excinuclease ABC, A subunit | low | > 94 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.43 | ABZR88_RS16725 | | endonuclease III | 0.48 | ABZR88_RS18670 | | excinuclease ABC subunit UvrA | low | > 71 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.42 | BT1671 | | endonuclease III (NCBI ptt file) | 0.50 | BT0578 | | excinuclease ABC subunit A (NCBI ptt file) | low | > 81 |
| Parabacteroides merdae CL09T00C40 | 0.41 | HMPREF1078_RS09755 | | endonuclease III | 0.50 | HMPREF1078_RS00835 | | excinuclease ABC subunit UvrA | low | > 61 |
| Fusobacterium nucleatum SB010 | 0.40 | HUW76_00260 | | endonuclease III | 0.54 | HUW76_06660 | | excinuclease ABC subunit UvrA | low | > 35 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.40 | CA265_RS00605 | | endonuclease III | 0.48 | CA265_RS25080 | | excinuclease ABC subunit A | low | > 88 |
| Synechococcus elongatus PCC 7942 | 0.32 | Synpcc7942_0447 | nth | DNA-(apurinic or apyrimidinic site) lyase / endonuclease III | 0.54 | Synpcc7942_0848 | uvrA | excinuclease ABC subunit A | low | > 38 |
| Alteromonas macleodii MIT1002 | 0.32 | MIT1002_01251 | | Endonuclease III | 0.76 | MIT1002_00179 | | Excinuclease ABC subunit A | low | > 70 |
| Bifidobacterium breve UCC2003 | 0.30 | BBR_RS11790 | | endonuclease III | 0.54 | BBR_RS15510 | | excinuclease ABC subunit UvrA | low | > 34 |
| Mycobacterium tuberculosis H37Rv | 0.30 | Rv3674c | | Probable endonuclease III Nth (DNA-(apurinic or apyrimidinic site)lyase) (AP lyase) (AP endonuclease class I) (endodeoxyribonuclease (apurinic or apyrimidinic)) (deoxyribonuclease (apurinic or apyrimidinic)) | 0.55 | Rv1638 | | Probable excinuclease ABC (subunit A-DNA-binding ATPase) UvrA | low | > 58 |
Not shown: 1 genomes with orthologs for Pf6N2E2_5594 only; 8 genomes with orthologs for Pf6N2E2_4888 only