Conservation of cofitness between Pf6N2E2_5594 and Pf6N2E2_4352 in Pseudomonas fluorescens FW300-N2E2

93 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N2E2 1.0 Pf6N2E2_5594 Endonuclease III (EC 4.2.99.18) 1.0 Pf6N2E2_4352 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.35 7
Pseudomonas fluorescens FW300-N2C3 0.99 AO356_18345 endonuclease III 1.00 AO356_12380 ATP-dependent DNA helicase RecG low > 104
Pseudomonas sp. RS175 0.98 PFR28_03349 Endonuclease III 0.99 PFR28_04435 ATP-dependent DNA helicase RecG low > 88
Pseudomonas fluorescens FW300-N1B4 0.97 Pf1N1B4_739 Endonuclease III (EC 4.2.99.18) 0.95 Pf1N1B4_2105 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 87
Pseudomonas fluorescens FW300-N2E3 0.96 AO353_04085 endonuclease III 0.94 AO353_09320 ATP-dependent DNA helicase RecG 0.44 2
Pseudomonas fluorescens GW456-L13 0.96 PfGW456L13_1753 Endonuclease III (EC 4.2.99.18) 0.95 PfGW456L13_772 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.47 2
Pseudomonas fluorescens SBW25 0.95 PFLU_RS05740 endonuclease III 0.94 PFLU_RS29550 ATP-dependent DNA helicase RecG low > 109
Pseudomonas fluorescens SBW25-INTG 0.95 PFLU_RS05740 endonuclease III 0.94 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.21 41
Pseudomonas simiae WCS417 0.95 PS417_05655 endonuclease III 0.94 PS417_27870 ATP-dependent DNA helicase RecG low > 88
Pseudomonas putida KT2440 0.93 PP_1092 DNA glycosylase/apyrimidinic (AP) lyase specific for damaged pyrimidinic sites 0.88 PP_5310 junction-specific ATP-dependent DNA helicase low > 96
Pseudomonas sp. S08-1 0.92 OH686_03910 endonuclease III 0.83 OH686_13505 ATP-dependent DNA helicase RecG low > 80
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase 0.88 Psyr_0201 ATP-dependent DNA helicase RecG low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase 0.88 Psyr_0201 ATP-dependent DNA helicase RecG low > 86
Pseudomonas stutzeri RCH2 0.89 Psest_3118 endonuclease III 0.84 Psest_4192 ATP-dependent DNA helicase RecG — —
Marinobacter adhaerens HP15 0.81 HP15_1285 endonuclease III 0.61 HP15_309 DNA helicase, ATP-dependent, RecG low > 73
Kangiella aquimarina DSM 16071 0.80 B158DRAFT_2365 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) 0.50 B158DRAFT_0566 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 40
Escherichia coli ECRC98 0.75 JDDGAC_02115 nth endonuclease III 0.56 JDDGAC_19170 recG ATP-dependent DNA helicase RecG low > 86
Escherichia coli ECRC99 0.75 KEDOAH_00580 nth endonuclease III 0.56 KEDOAH_12600 recG ATP-dependent DNA helicase RecG — —
Escherichia coli ECRC102 0.75 NIAGMN_00540 nth endonuclease III 0.56 NIAGMN_13305 recG ATP-dependent DNA helicase RecG — —
Escherichia coli ECRC101 0.75 MCAODC_17885 nth endonuclease III 0.56 MCAODC_06055 recG ATP-dependent DNA helicase RecG low > 87
Escherichia coli ECRC100 0.75 OKFHMN_27525 nth endonuclease III 0.56 OKFHMN_15545 recG ATP-dependent DNA helicase RecG low > 80
Escherichia coli BL21 0.75 ECD_01603 DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) 0.56 ECD_03509 ATP-dependent DNA helicase — —
Escherichia coli ECOR38 0.75 HEPCGN_05910 nth endonuclease III 0.55 HEPCGN_14365 recG ATP-dependent DNA helicase RecG low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.75 OHPLBJKB_02093 Endonuclease III 0.56 OHPLBJKB_00049 ATP-dependent DNA helicase RecG low > 73
Escherichia fergusonii Becca 0.75 EFB2_02359 Endonuclease III 0.56 EFB2_00136 ATP-dependent DNA helicase RecG low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.75 GFF3641 Endonuclease III (EC 4.2.99.18) 0.56 GFF355 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 78
Escherichia coli BW25113 0.75 b1633 nth DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) (NCBI) 0.56 b3652 recG ATP-dependent DNA helicase (NCBI) low > 76
Escherichia coli ECOR27 0.75 NOLOHH_18045 nth endonuclease III 0.56 NOLOHH_07425 recG ATP-dependent DNA helicase RecG — —
Escherichia coli Nissle 1917 0.75 ECOLIN_RS09110 endonuclease III 0.55 ECOLIN_RS20800 ATP-dependent DNA helicase RecG — —
Escherichia coli ECRC62 0.75 BNILDI_16835 nth endonuclease III 0.56 BNILDI_04090 recG ATP-dependent DNA helicase RecG low > 75
Klebsiella michiganensis M5al 0.74 BWI76_RS16385 endonuclease III 0.55 BWI76_RS27440 DNA helicase RecG — —
Pectobacterium carotovorum WPP14 0.74 HER17_RS10860 endonuclease III 0.55 HER17_RS21395 ATP-dependent DNA helicase RecG low > 75
Pantoea sp. MT58 0.74 IAI47_10475 endonuclease III 0.57 IAI47_00500 ATP-dependent DNA helicase RecG low > 76
Herbaspirillum seropedicae SmR1 0.74 HSERO_RS08070 endonuclease IV 0.45 HSERO_RS06165 ATP-dependent DNA helicase RecG low > 78
Erwinia tracheiphila SCR3 0.74 LU632_RS11305 nth endonuclease III 0.56 LU632_RS22190 recG ATP-dependent DNA helicase RecG low > 74
Enterobacter asburiae PDN3 0.74 EX28DRAFT_1629 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) 0.56 EX28DRAFT_3901 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 76
Serratia liquefaciens MT49 0.74 IAI46_11455 endonuclease III 0.56 IAI46_24905 ATP-dependent DNA helicase RecG low > 86
Enterobacter sp. TBS_079 0.74 MPMX20_02005 Endonuclease III 0.55 MPMX20_00084 ATP-dependent DNA helicase RecG low > 85
Shewanella oneidensis MR-1 0.74 SO2514 nth endonuclease III (NCBI ptt file) 0.57 SO4364 recG ATP-dependent DNA helicase RecG (NCBI ptt file) low > 76
Rahnella sp. WP5 0.73 EX31_RS06590 endonuclease III 0.56 EX31_RS15820 ATP-dependent DNA helicase RecG low > 89
Shewanella amazonensis SB2B 0.73 Sama_1836 endonuclease III (RefSeq) 0.58 Sama_3375 ATP-dependent DNA helicase RecG (RefSeq) low > 62
Vibrio cholerae E7946 ATCC 55056 0.73 CSW01_05145 endonuclease III 0.55 CSW01_13680 DNA helicase RecG low > 62
Dickeya dianthicola ME23 0.72 DZA65_RS11025 endonuclease III 0.55 DZA65_RS22160 ATP-dependent DNA helicase RecG 0.33 23
Acinetobacter radioresistens SK82 0.72 MPMX26_02306 Endonuclease III 0.54 MPMX26_02732 ATP-dependent DNA helicase RecG low > 36
Shewanella sp. ANA-3 0.72 Shewana3_2174 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (RefSeq) 0.57 Shewana3_0348 ATP-dependent DNA helicase RecG (RefSeq) low > 73
Rhodanobacter denitrificans MT42 0.72 LRK55_RS01640 endonuclease III 0.56 LRK55_RS11530 ATP-dependent DNA helicase RecG low > 63
Dickeya dianthicola 67-19 0.72 HGI48_RS10545 endonuclease III 0.55 HGI48_RS21190 ATP-dependent DNA helicase RecG 0.47 60
Rhodanobacter denitrificans FW104-10B01 0.72 LRK54_RS01850 endonuclease III 0.55 LRK54_RS11805 ATP-dependent DNA helicase RecG low > 59
Cupriavidus basilensis FW507-4G11 0.71 RR42_RS05970 endonuclease III 0.47 RR42_RS17390 ATP-dependent DNA helicase RecG 0.36 90
Dechlorosoma suillum PS 0.71 Dsui_2985 endonuclease III 0.44 Dsui_0311 ATP-dependent DNA helicase RecG low > 51
Dickeya dadantii 3937 0.71 DDA3937_RS10545 endonuclease III 0.56 DDA3937_RS00170 ATP-dependent DNA helicase RecG low > 74
Dyella japonica UNC79MFTsu3.2 0.71 ABZR86_RS08185 endonuclease III 0.55 ABZR86_RS11840 ATP-dependent DNA helicase RecG low > 74
Rhodanobacter sp. FW510-T8 0.71 OKGIIK_04675 nth endonuclease III 0.55 OKGIIK_12090 recG ATP-dependent DNA helicase RecG low > 52
Ralstonia solanacearum PSI07 0.70 RPSI07_RS19265 endonuclease III 0.46 RPSI07_RS11625 DNA helicase RecG low > 81
Shewanella loihica PV-4 0.70 Shew_2072 endonuclease III (RefSeq) 0.56 Shew_3507 ATP-dependent DNA helicase RecG (RefSeq) 0.26 55
Xanthomonas campestris pv. campestris strain 8004 0.70 Xcc-8004.3350.1 Endonuclease III (EC 4.2.99.18) 0.52 Xcc-8004.1204.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 74
Ralstonia sp. UNC404CL21Col 0.70 ABZR87_RS09915 endonuclease III 0.47 ABZR87_RS01270 ATP-dependent DNA helicase RecG low > 80
Ralstonia solanacearum GMI1000 0.70 RS_RS04975 endonuclease III 0.46 RS_RS13565 DNA helicase RecG — —
Ralstonia solanacearum UW163 0.70 UW163_RS11660 endonuclease III 0.46 UW163_RS07950 DNA helicase RecG — —
Ralstonia solanacearum IBSBF1503 0.70 RALBFv3_RS14195 endonuclease III 0.46 RALBFv3_RS05675 DNA helicase RecG low > 76
Paraburkholderia sabiae LMG 24235 0.69 QEN71_RS24560 endonuclease III 0.47 QEN71_RS26630 ATP-dependent DNA helicase RecG — —
Variovorax sp. SCN45 0.69 GFF418 Endonuclease III (EC 4.2.99.18) 0.40 GFF5538 ATP-dependent DNA helicase RecG (EC 3.6.4.12) low > 127
Paraburkholderia graminis OAS925 0.68 ABIE53_001423 endonuclease-3 0.48 ABIE53_000833 ATP-dependent DNA helicase RecG low > 113
Paraburkholderia bryophila 376MFSha3.1 0.68 H281DRAFT_00293 DNA-(apurinic or apyrimidinic site) lyase /endonuclease III 0.48 H281DRAFT_04672 ATP-dependent DNA helicase RecG low > 103
Acidovorax sp. GW101-3H11 0.68 Ac3H11_1010 Endonuclease III (EC 4.2.99.18) 0.45 Ac3H11_781 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 79
Castellaniella sp019104865 MT123 0.67 ABCV34_RS08465 endonuclease III 0.43 ABCV34_RS03570 ATP-dependent DNA helicase RecG low > 48
Variovorax sp. OAS795 0.67 ABID97_RS17315 endonuclease III 0.41 ABID97_RS01575 ATP-dependent DNA helicase RecG low > 91
Burkholderia phytofirmans PsJN 0.67 BPHYT_RS06080 endonuclease IV 0.49 BPHYT_RS03400 ATP-dependent DNA helicase RecG low > 109
Lysobacter sp. OAE881 0.67 ABIE51_RS07560 endonuclease III 0.53 ABIE51_RS17230 ATP-dependent DNA helicase RecG low > 62
Hydrogenophaga sp. GW460-11-11-14-LB1 0.67 GFF4003 Endonuclease III (EC 4.2.99.18) 0.43 GFF2802 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 90
Azospirillum sp. SherDot2 0.63 MPMX19_02500 Endonuclease III 0.34 MPMX19_00951 ATP-dependent DNA helicase RecG — —
Azospirillum brasilense Sp245 0.62 AZOBR_RS01565 endonuclease III 0.34 AZOBR_RS09850 ATP-dependent DNA helicase RecG 0.44 33
Bosea sp. OAE506 0.59 ABIE41_RS03410 endonuclease III 0.30 ABIE41_RS15815 ATP-dependent DNA helicase RecG low > 77
Sphingomonas koreensis DSMZ 15582 0.59 Ga0059261_2546 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) 0.33 Ga0059261_0958 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 68
Magnetospirillum magneticum AMB-1 0.58 AMB_RS21105 endonuclease III 0.36 AMB_RS12400 ATP-dependent DNA helicase RecG — —
Rhodospirillum rubrum S1H 0.58 Rru_A0153 Endonuclease III/Nth (NCBI) 0.29 Rru_A1728 ATP-dependent DNA helicase RecG (NCBI) — —
Dinoroseobacter shibae DFL-12 0.57 Dshi_3023 endonuclease III (RefSeq) 0.33 Dshi_1510 DEAD/DEAH box helicase domain protein (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.56 PGA1_c29040 endonuclease III 0.34 PGA1_c14380 ATP-dependent DNA helicase RecG low > 62
Brevundimonas sp. GW460-12-10-14-LB2 0.54 A4249_RS15000 endonuclease III 0.29 A4249_RS04765 ATP-dependent DNA helicase RecG low > 48
Caulobacter crescentus NA1000 0.53 CCNA_03847 endonuclease III 0.33 CCNA_01504 ATP-dependent DNA helicase recG low > 66
Caulobacter crescentus NA1000 Δfur 0.53 CCNA_03847 endonuclease III 0.33 CCNA_01504 ATP-dependent DNA helicase recG low > 67
Phocaeicola vulgatus CL09T03C04 0.46 HMPREF1058_RS15245 endonuclease III 0.34 HMPREF1058_RS08295 ATP-dependent DNA helicase RecG low > 67
Phocaeicola dorei CL03T12C01 0.45 ABI39_RS11275 endonuclease III 0.34 ABI39_RS02470 ATP-dependent DNA helicase RecG low > 72
Pontibacter actiniarum KMM 6156, DSM 19842 0.45 CA264_14955 endonuclease III 0.33 CA264_15020 DNA helicase RecG low > 74
Echinicola vietnamensis KMM 6221, DSM 17526 0.44 Echvi_1263 endonuclease III 0.31 Echvi_1162 ATP-dependent DNA helicase RecG low > 79
Bacteroides stercoris CC31F 0.44 HMPREF1181_RS05445 endonuclease III 0.34 HMPREF1181_RS06615 ATP-dependent DNA helicase RecG low > 56
Mucilaginibacter yixingensis YX-36 DSM 26809 0.43 ABZR88_RS16725 endonuclease III 0.31 ABZR88_RS17240 ATP-dependent DNA helicase RecG low > 71
Bacteroides thetaiotaomicron VPI-5482 0.42 BT1671 endonuclease III (NCBI ptt file) 0.33 BT3924 ATP-dependent DNA helicase recG (NCBI ptt file) — —
Parabacteroides merdae CL09T00C40 0.41 HMPREF1078_RS09755 endonuclease III 0.34 HMPREF1078_RS12765 ATP-dependent DNA helicase RecG — —
Fusobacterium nucleatum SB010 0.40 HUW76_00260 endonuclease III 0.33 HUW76_01465 ATP-dependent DNA helicase RecG low > 35
Pedobacter sp. GW460-11-11-14-LB5 0.40 CA265_RS00605 endonuclease III 0.32 CA265_RS22835 ATP-dependent DNA helicase RecG low > 88
Synechococcus elongatus PCC 7942 0.32 Synpcc7942_0447 nth DNA-(apurinic or apyrimidinic site) lyase / endonuclease III 0.34 Synpcc7942_1079 recG ATP-dependent DNA helicase RecG — —
Alteromonas macleodii MIT1002 0.32 MIT1002_01251 Endonuclease III 0.57 MIT1002_00111 ATP-dependent DNA helicase RecG low > 70
Mycobacterium tuberculosis H37Rv 0.30 Rv3674c Probable endonuclease III Nth (DNA-(apurinic or apyrimidinic site)lyase) (AP lyase) (AP endonuclease class I) (endodeoxyribonuclease (apurinic or apyrimidinic)) (deoxyribonuclease (apurinic or apyrimidinic)) 0.24 Rv2973c Probable ATP-dependent DNA helicase RecG low > 58

Not shown: 2 genomes with orthologs for Pf6N2E2_5594 only; 4 genomes with orthologs for Pf6N2E2_4352 only