Conservation of cofitness between PP_0872 and PP_5310 in Pseudomonas putida KT2440

91 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0872 Peptide chain release factor 3 1.0 PP_5310 junction-specific ATP-dependent DNA helicase 0.42 6
Pseudomonas syringae pv. syringae B728a 0.95 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) 0.87 Psyr_0201 ATP-dependent DNA helicase RecG — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.95 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) 0.87 Psyr_0201 ATP-dependent DNA helicase RecG — —
Pseudomonas simiae WCS417 0.95 PS417_04030 peptide chain release factor 3 0.89 PS417_27870 ATP-dependent DNA helicase RecG — —
Pseudomonas fluorescens FW300-N2E3 0.95 AO353_05420 peptide chain release factor 3 0.89 AO353_09320 ATP-dependent DNA helicase RecG low > 101
Pseudomonas fluorescens GW456-L13 0.95 PfGW456L13_5060 Peptide chain release factor 3 0.89 PfGW456L13_772 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 87
Pseudomonas fluorescens FW300-N2C3 0.95 AO356_07285 peptide chain release factor 3 0.87 AO356_12380 ATP-dependent DNA helicase RecG — —
Pseudomonas sp. RS175 0.95 PFR28_00118 Peptide chain release factor RF3 0.87 PFR28_04435 ATP-dependent DNA helicase RecG — —
Pseudomonas fluorescens SBW25-INTG 0.95 PFLU_RS04070 peptide chain release factor 3 0.89 PFLU_RS29550 ATP-dependent DNA helicase RecG low > 109
Pseudomonas fluorescens SBW25 0.95 PFLU_RS04070 peptide chain release factor 3 0.89 PFLU_RS29550 ATP-dependent DNA helicase RecG low > 109
Pseudomonas stutzeri RCH2 0.94 Psest_3351 peptide chain release factor 3 0.83 Psest_4192 ATP-dependent DNA helicase RecG — —
Pseudomonas fluorescens FW300-N2E2 0.93 Pf6N2E2_3327 Peptide chain release factor 3 0.87 Pf6N2E2_4352 ATP-dependent DNA helicase RecG (EC 3.6.1.-) — —
Pseudomonas sp. S08-1 0.92 OH686_08765 peptide chain release factor 3 0.82 OH686_13505 ATP-dependent DNA helicase RecG — —
Pseudomonas fluorescens FW300-N1B4 0.77 Pf1N1B4_1130 Peptide chain release factor 3 0.89 Pf1N1B4_2105 ATP-dependent DNA helicase RecG (EC 3.6.1.-) — —
Acinetobacter radioresistens SK82 0.72 MPMX26_00476 Peptide chain release factor RF3 0.55 MPMX26_02732 ATP-dependent DNA helicase RecG low > 36
Kangiella aquimarina DSM 16071 0.70 B158DRAFT_2239 peptide chain release factor 3 0.51 B158DRAFT_0566 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 40
Pantoea sp. MT58 0.69 IAI47_03375 peptide chain release factor 3 0.56 IAI47_00500 ATP-dependent DNA helicase RecG low > 76
Marinobacter adhaerens HP15 0.69 HP15_541 peptide chain release factor 3 0.60 HP15_309 DNA helicase, ATP-dependent, RecG low > 73
Vibrio cholerae E7946 ATCC 55056 0.69 CSW01_03470 peptide chain release factor 3 0.54 CSW01_13680 DNA helicase RecG low > 62
Shewanella loihica PV-4 0.69 Shew_2820 prfC peptide chain release factor 3 (RefSeq) 0.55 Shew_3507 ATP-dependent DNA helicase RecG (RefSeq) low > 60
Erwinia tracheiphila SCR3 0.69 LU632_RS02475 prfC peptide chain release factor 3 0.56 LU632_RS22190 recG ATP-dependent DNA helicase RecG low > 74
Enterobacter sp. TBS_079 0.68 MPMX20_00673 Peptide chain release factor RF3 0.55 MPMX20_00084 ATP-dependent DNA helicase RecG low > 85
Klebsiella michiganensis M5al 0.68 BWI76_RS04100 peptide chain release factor 3 0.55 BWI76_RS27440 DNA helicase RecG low > 92
Shewanella amazonensis SB2B 0.68 Sama_0968 prfC peptide chain release factor 3 (RefSeq) 0.57 Sama_3375 ATP-dependent DNA helicase RecG (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.68 MIT1002_01192 Peptide chain release factor 3 0.57 MIT1002_00111 ATP-dependent DNA helicase RecG low > 70
Shewanella sp. ANA-3 0.68 Shewana3_1037 prfC peptide chain release factor 3 (RefSeq) 0.56 Shewana3_0348 ATP-dependent DNA helicase RecG (RefSeq) 0.41 43
Serratia liquefaciens MT49 0.68 IAI46_02875 peptide chain release factor 3 0.56 IAI46_24905 ATP-dependent DNA helicase RecG low > 86
Enterobacter asburiae PDN3 0.68 EX28DRAFT_3583 peptide chain release factor 3 0.56 EX28DRAFT_3901 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 76
Dickeya dianthicola ME23 0.68 DZA65_RS02505 peptide chain release factor 3 0.55 DZA65_RS22160 ATP-dependent DNA helicase RecG low > 75
Rahnella sp. WP5 0.68 EX31_RS04095 peptide chain release factor 3 0.56 EX31_RS15820 ATP-dependent DNA helicase RecG — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.68 GFF1035 Peptide chain release factor 3 0.56 GFF355 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 78
Dickeya dadantii 3937 0.68 DDA3937_RS02445 peptide chain release factor 3 0.55 DDA3937_RS00170 ATP-dependent DNA helicase RecG low > 74
Dickeya dianthicola 67-19 0.68 HGI48_RS02400 peptide chain release factor 3 0.55 HGI48_RS21190 ATP-dependent DNA helicase RecG — —
Pectobacterium carotovorum WPP14 0.67 HER17_RS19065 peptide chain release factor 3 0.56 HER17_RS21395 ATP-dependent DNA helicase RecG low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_03687 Peptide chain release factor RF3 0.56 OHPLBJKB_00049 ATP-dependent DNA helicase RecG 0.71 59
Escherichia coli ECOR27 0.67 NOLOHH_03600 prfC peptide chain release factor 3 0.56 NOLOHH_07425 recG ATP-dependent DNA helicase RecG low > 57
Escherichia coli Nissle 1917 0.67 ECOLIN_RS25110 peptide chain release factor 3 0.56 ECOLIN_RS20800 ATP-dependent DNA helicase RecG low > 52
Escherichia coli ECRC101 0.67 MCAODC_01795 prfC peptide chain release factor 3 0.56 MCAODC_06055 recG ATP-dependent DNA helicase RecG — —
Escherichia coli ECRC98 0.67 JDDGAC_14875 prfC peptide chain release factor 3 0.56 JDDGAC_19170 recG ATP-dependent DNA helicase RecG — —
Escherichia coli BW25113 0.67 b4375 prfC peptide chain release factor 3 (NCBI) 0.56 b3652 recG ATP-dependent DNA helicase (NCBI) low > 76
Escherichia coli ECRC62 0.67 BNILDI_08000 prfC peptide chain release factor 3 0.56 BNILDI_04090 recG ATP-dependent DNA helicase RecG — —
Escherichia coli ECRC101 0.67 OKFHMN_11280 prfC peptide chain release factor 3 0.56 OKFHMN_15545 recG ATP-dependent DNA helicase RecG — —
Escherichia fergusonii Becca 0.67 EFB2_04072 Peptide chain release factor RF3 0.56 EFB2_00136 ATP-dependent DNA helicase RecG low > 86
Escherichia coli ECRC99 0.67 KEDOAH_16865 prfC peptide chain release factor 3 0.56 KEDOAH_12600 recG ATP-dependent DNA helicase RecG — —
Escherichia coli BL21 0.67 ECD_04250 peptide chain release factor RF-3 0.56 ECD_03509 ATP-dependent DNA helicase low > 60
Escherichia coli ECRC102 0.67 NIAGMN_09130 prfC peptide chain release factor 3 0.56 NIAGMN_13305 recG ATP-dependent DNA helicase RecG — —
Escherichia coli ECOR38 0.67 HEPCGN_09285 prfC peptide chain release factor 3 0.56 HEPCGN_14365 recG ATP-dependent DNA helicase RecG low > 85
Rhodanobacter sp. FW510-T8 0.64 OKGIIK_01430 prfC peptide chain release factor 3 0.54 OKGIIK_12090 recG ATP-dependent DNA helicase RecG — —
Dyella japonica UNC79MFTsu3.2 0.64 ABZR86_RS19000 peptide chain release factor 3 0.55 ABZR86_RS11840 ATP-dependent DNA helicase RecG — —
Rhodanobacter denitrificans MT42 0.64 LRK55_RS05155 peptide chain release factor 3 0.55 LRK55_RS11530 ATP-dependent DNA helicase RecG — —
Herbaspirillum seropedicae SmR1 0.64 HSERO_RS14640 peptide chain release factor 3 0.45 HSERO_RS06165 ATP-dependent DNA helicase RecG low > 78
Rhodanobacter denitrificans FW104-10B01 0.64 LRK54_RS05380 peptide chain release factor 3 0.55 LRK54_RS11805 ATP-dependent DNA helicase RecG — —
Lysobacter sp. OAE881 0.63 ABIE51_RS16210 peptide chain release factor 3 0.53 ABIE51_RS17230 ATP-dependent DNA helicase RecG — —
Xanthomonas campestris pv. campestris strain 8004 0.62 Xcc-8004.1590.1 Peptide chain release factor 3 0.51 Xcc-8004.1204.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) — —
Cupriavidus basilensis FW507-4G11 0.62 RR42_RS37475 peptide chain release factor 3 0.47 RR42_RS17390 ATP-dependent DNA helicase RecG low > 128
Ralstonia sp. UNC404CL21Col 0.61 ABZR87_RS23485 peptide chain release factor 3 0.46 ABZR87_RS01270 ATP-dependent DNA helicase RecG low > 80
Dechlorosoma suillum PS 0.61 Dsui_2418 peptide chain release factor 3 0.45 Dsui_0311 ATP-dependent DNA helicase RecG low > 51
Ralstonia solanacearum UW163 0.60 UW163_RS16595 peptide chain release factor 3 0.46 UW163_RS07950 DNA helicase RecG — —
Ralstonia solanacearum IBSBF1503 0.60 RALBFv3_RS23345 peptide chain release factor 3 0.46 RALBFv3_RS05675 DNA helicase RecG low > 76
Ralstonia solanacearum PSI07 0.60 RPSI07_RS07810 peptide chain release factor 3 0.46 RPSI07_RS11625 DNA helicase RecG low > 81
Ralstonia solanacearum GMI1000 0.60 RS_RS25080 peptide chain release factor 3 0.46 RS_RS13565 DNA helicase RecG — —
Castellaniella sp019104865 MT123 0.54 ABCV34_RS12505 peptide chain release factor 3 0.43 ABCV34_RS03570 ATP-dependent DNA helicase RecG low > 48
Paraburkholderia graminis OAS925 0.54 ABIE53_004717 peptide chain release factor 3 0.46 ABIE53_000833 ATP-dependent DNA helicase RecG low > 113
Paraburkholderia bryophila 376MFSha3.1 0.54 H281DRAFT_03538 bacterial peptide chain release factor 3 (bRF-3) 0.46 H281DRAFT_04672 ATP-dependent DNA helicase RecG low > 103
Burkholderia phytofirmans PsJN 0.54 BPHYT_RS34275 peptide chain release factor 3 0.47 BPHYT_RS03400 ATP-dependent DNA helicase RecG low > 109
Paraburkholderia sabiae LMG 24235 0.53 QEN71_RS17200 peptide chain release factor 3 0.46 QEN71_RS26630 ATP-dependent DNA helicase RecG — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.53 GFF768 Peptide chain release factor 3 0.43 GFF2802 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 90
Acidovorax sp. GW101-3H11 0.51 Ac3H11_3041 Peptide chain release factor 3 0.44 Ac3H11_781 ATP-dependent DNA helicase RecG (EC 3.6.1.-) — —
Magnetospirillum magneticum AMB-1 0.51 AMB_RS01375 peptide chain release factor 3 0.35 AMB_RS12400 ATP-dependent DNA helicase RecG — —
Variovorax sp. SCN45 0.51 GFF2045 Peptide chain release factor 3 0.40 GFF5538 ATP-dependent DNA helicase RecG (EC 3.6.4.12) 0.72 94
Echinicola vietnamensis KMM 6221, DSM 17526 0.50 Echvi_0584 peptide chain release factor 3 0.31 Echvi_1162 ATP-dependent DNA helicase RecG low > 79
Sinorhizobium meliloti 1021 0.50 SMc00427 peptide chain release factor RF-3 protein 0.35 SMc00228 ATP-dependent DNA helicase RecG low > 103
Rhizobium sp. OAE497 0.50 ABIE40_RS01450 peptide chain release factor 3 0.35 ABIE40_RS09300 ATP-dependent DNA helicase RecG low > 107
Azospirillum brasilense Sp245 0.49 AZOBR_RS14730 peptide chain release factor 3 0.35 AZOBR_RS09850 ATP-dependent DNA helicase RecG — —
Parabacteroides merdae CL09T00C40 0.49 HMPREF1078_RS04145 peptide chain release factor 3 0.33 HMPREF1078_RS12765 ATP-dependent DNA helicase RecG — —
Agrobacterium fabrum C58 0.48 Atu0315 peptide chain release factor 3 0.34 Atu1780 ATP-dependent DNA helicase — —
Rhodospirillum rubrum S1H 0.48 Rru_A2497 Peptide chain release factor 3 (NCBI) 0.28 Rru_A1728 ATP-dependent DNA helicase RecG (NCBI) — —
Azospirillum sp. SherDot2 0.48 MPMX19_01192 Peptide chain release factor 3 0.34 MPMX19_00951 ATP-dependent DNA helicase RecG — —
Bosea sp. OAE506 0.48 ABIE41_RS06180 peptide chain release factor 3 0.30 ABIE41_RS15815 ATP-dependent DNA helicase RecG low > 77
Rhodopseudomonas palustris CGA009 0.47 TX73_011820 peptide chain release factor 3 0.30 TX73_013795 ATP-dependent DNA helicase RecG low > 86
Phocaeicola vulgatus CL09T03C04 0.46 HMPREF1058_RS07935 peptide chain release factor 3 0.34 HMPREF1058_RS08295 ATP-dependent DNA helicase RecG — —
Phocaeicola dorei CL03T12C01 0.46 ABI39_RS00385 peptide chain release factor 3 0.34 ABI39_RS02470 ATP-dependent DNA helicase RecG — —
Pedobacter sp. GW460-11-11-14-LB5 0.46 CA265_RS18435 peptide chain release factor 3 0.32 CA265_RS22835 ATP-dependent DNA helicase RecG low > 88
Sphingomonas koreensis DSMZ 15582 0.45 Ga0059261_2044 peptide chain release factor 3 0.32 Ga0059261_0958 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 68
Phaeobacter inhibens DSM 17395 0.45 PGA1_c10620 peptide chain release factor 3 0.33 PGA1_c14380 ATP-dependent DNA helicase RecG — —
Bacteroides stercoris CC31F 0.45 HMPREF1181_RS05585 peptide chain release factor 3 0.33 HMPREF1181_RS06615 ATP-dependent DNA helicase RecG low > 56
Bacteroides thetaiotaomicron VPI-5482 0.45 BT1729 peptide chain release factor 3 (RF-3) (NCBI ptt file) 0.33 BT3924 ATP-dependent DNA helicase recG (NCBI ptt file) — —
Dinoroseobacter shibae DFL-12 0.44 Dshi_1336 peptide chain release factor 3 (RefSeq) 0.33 Dshi_1510 DEAD/DEAH box helicase domain protein (RefSeq) low > 64
Brevundimonas sp. GW460-12-10-14-LB2 0.44 A4249_RS15275 peptide chain release factor 3 0.29 A4249_RS04765 ATP-dependent DNA helicase RecG low > 48
Caulobacter crescentus NA1000 0.43 CCNA_01123 peptide chain release factor RF-3 0.33 CCNA_01504 ATP-dependent DNA helicase recG low > 66
Caulobacter crescentus NA1000 Δfur 0.43 CCNA_01123 peptide chain release factor RF-3 0.33 CCNA_01504 ATP-dependent DNA helicase recG low > 67
Synechococcus elongatus PCC 7942 0.42 Synpcc7942_2365 prfC peptide chain release factor 3 0.34 Synpcc7942_1079 recG ATP-dependent DNA helicase RecG — —

Not shown: 3 genomes with orthologs for PP_0872 only; 6 genomes with orthologs for PP_5310 only