Conservation of cofitness between PP_5227 and PP_5128 in Pseudomonas putida KT2440

77 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5227 diaminopimelate decarboxylase 1.0 PP_5128 Dihydroxy-acid dehydratase 0.48 9
Pseudomonas fluorescens FW300-N2C3 0.89 AO356_12740 diaminopimelate decarboxylase 0.96 AO356_13250 dihydroxy-acid dehydratase — —
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_4419 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.96 Pf6N2E2_4564 Dihydroxy-acid dehydratase (EC 4.2.1.9) — —
Pseudomonas sp. RS175 0.89 PFR28_04375 Diaminopimelate decarboxylase 0.96 PFR28_04278 Dihydroxy-acid dehydratase — —
Pseudomonas fluorescens GW456-L13 0.88 PfGW456L13_845 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.97 PfGW456L13_973 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.83 37
Pseudomonas fluorescens FW300-N1B4 0.88 Pf1N1B4_2174 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.96 Pf1N1B4_2303 Dihydroxy-acid dehydratase (EC 4.2.1.9) — —
Pseudomonas syringae pv. syringae B728a 0.88 Psyr_0182 diaminopimelate decarboxylase 0.94 Psyr_0469 dihydroxyacid dehydratase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.88 Psyr_0182 diaminopimelate decarboxylase 0.94 Psyr_0469 dihydroxyacid dehydratase — —
Pseudomonas simiae WCS417 0.87 PS417_27580 diaminopimelate decarboxylase 0.96 PS417_26890 dihydroxy-acid dehydratase — —
Pseudomonas fluorescens FW300-N2E3 0.86 AO353_09035 diaminopimelate decarboxylase 0.97 AO353_08345 dihydroxy-acid dehydratase — —
Pseudomonas fluorescens SBW25 0.86 PFLU_RS29265 diaminopimelate decarboxylase 0.96 PFLU_RS28535 dihydroxy-acid dehydratase low > 109
Pseudomonas fluorescens SBW25-INTG 0.86 PFLU_RS29265 diaminopimelate decarboxylase 0.96 PFLU_RS28535 dihydroxy-acid dehydratase — —
Pseudomonas stutzeri RCH2 0.82 Psest_3764 diaminopimelate decarboxylase 0.94 Psest_0234 dihydroxy-acid dehydratase — —
Pseudomonas sp. S08-1 0.81 OH686_13800 diaminopimelate decarboxylase 0.93 OH686_14100 dihydroxy-acid dehydratase low > 80
Marinobacter adhaerens HP15 0.72 HP15_247 diaminopimelate decarboxylase 0.78 HP15_595 dihydroxy-acid dehydratase — —
Vibrio cholerae E7946 ATCC 55056 0.67 CSW01_00635 diaminopimelate decarboxylase 0.77 CSW01_00140 dihydroxy-acid dehydratase low > 62
Shewanella loihica PV-4 0.66 Shew_0322 diaminopimelate decarboxylase (RefSeq) 0.74 Shew_0292 dihydroxy-acid dehydratase (RefSeq) 0.98 4
Shewanella oneidensis MR-1 0.65 SO4309 lysA diaminopimelate decarboxylase (NCBI ptt file) 0.74 SO4345 ilvD dihydroxy-acid dehydratase (NCBI ptt file) 0.99 4
Shewanella sp. ANA-3 0.65 Shewana3_0390 diaminopimelate decarboxylase (RefSeq) 0.74 Shewana3_0358 dihydroxy-acid dehydratase (RefSeq) 0.99 1
Dechlorosoma suillum PS 0.64 Dsui_1182 diaminopimelate decarboxylase 0.75 Dsui_1122 dihydroxy-acid dehydratase — —
Alteromonas macleodii MIT1002 0.61 MIT1002_00160 Diaminopimelate decarboxylase 0.78 MIT1002_04041 Dihydroxy-acid dehydratase 0.79 37
Acinetobacter radioresistens SK82 0.61 MPMX26_02232 Diaminopimelate decarboxylase 0.28 MPMX26_03019 Dihydroxy-acid dehydratase 0.93 1
Paraburkholderia sabiae LMG 24235 0.61 QEN71_RS28080 diaminopimelate decarboxylase 0.80 QEN71_RS21095 dihydroxy-acid dehydratase low > 153
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS06990 diaminopimelate decarboxylase 0.29 RALBFv3_RS04535 dihydroxy-acid dehydratase — —
Ralstonia solanacearum UW163 0.59 UW163_RS06625 diaminopimelate decarboxylase 0.29 UW163_RS09135 dihydroxy-acid dehydratase — —
Ralstonia solanacearum GMI1000 0.59 RS_RS14930 diaminopimelate decarboxylase 0.30 RS_RS12105 dihydroxy-acid dehydratase — —
Paraburkholderia graminis OAS925 0.59 ABIE53_003749 diaminopimelate decarboxylase 0.80 ABIE53_006513 dihydroxy-acid dehydratase low > 113
Burkholderia phytofirmans PsJN 0.59 BPHYT_RS17930 diaminopimelate decarboxylase 0.71 BPHYT_RS10100 dihydroxy-acid dehydratase low > 109
Ralstonia sp. UNC404CL21Col 0.59 ABZR87_RS02640 diaminopimelate decarboxylase 0.81 ABZR87_RS00240 dihydroxy-acid dehydratase low > 80
Paraburkholderia bryophila 376MFSha3.1 0.59 H281DRAFT_05606 diaminopimelate decarboxylase 0.80 H281DRAFT_05312 dihydroxyacid dehydratase — —
Shewanella amazonensis SB2B 0.59 Sama_3250 diaminopimelate decarboxylase (RefSeq) 0.74 Sama_3279 dihydroxy-acid dehydratase (RefSeq) 0.98 1
Ralstonia solanacearum PSI07 0.59 RPSI07_RS10250 diaminopimelate decarboxylase 0.30 RPSI07_RS12840 dihydroxy-acid dehydratase — —
Herbaspirillum seropedicae SmR1 0.58 HSERO_RS00950 diaminopimelate decarboxylase 0.72 HSERO_RS02650 dihydroxy-acid dehydratase — —
Castellaniella sp019104865 MT123 0.57 ABCV34_RS12685 diaminopimelate decarboxylase 0.70 ABCV34_RS14810 dihydroxy-acid dehydratase — —
Desulfovibrio vulgaris Miyazaki F 0.55 DvMF_0353 diaminopimelate decarboxylase (RefSeq) 0.37 DvMF_2034 dihydroxy-acid dehydratase (RefSeq) low > 51
Cupriavidus basilensis FW507-4G11 0.54 RR42_RS19050 diaminopimelate decarboxylase 0.30 RR42_RS16210 dihydroxy-acid dehydratase — —
Variovorax sp. SCN45 0.53 GFF5315 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.31 GFF471 Dihydroxy-acid dehydratase (EC 4.2.1.9) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.52 GFF1341 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.65 GFF2073 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 90
Desulfovibrio vulgaris Hildenborough JW710 0.52 DVU1647 lysA-1 diaminopimelate decarboxylase (TIGR) 0.37 DVU3373 ilvD dihydroxy-acid dehydratase (TIGR) low > 55
Variovorax sp. OAS795 0.51 ABID97_RS23305 diaminopimelate decarboxylase 0.31 ABID97_RS17500 dihydroxy-acid dehydratase — —
Azospirillum sp. SherDot2 0.49 MPMX19_05819 Diaminopimelate decarboxylase 0.73 MPMX19_05356 Dihydroxy-acid dehydratase — —
Azospirillum brasilense Sp245 0.49 AZOBR_RS16945 diaminopimelate decarboxylase 0.75 AZOBR_RS15015 dihydroxy-acid dehydratase — —
Agrobacterium fabrum C58 0.47 Atu3601 diaminopimelate decarboxylase 0.76 Atu1918 dihydroxy-acid dehydratase — —
Rhodopseudomonas palustris CGA009 0.47 TX73_024635 diaminopimelate decarboxylase 0.74 TX73_007515 dihydroxy-acid dehydratase — —
Sinorhizobium meliloti 1021 0.46 SMc00723 diaminopimelate DAP decarboxylase 0.77 SMc04045 dihydroxy-acid dehydratase — —
Phaeobacter inhibens DSM 17395 0.46 PGA1_c03470 diaminopimelate decarboxylase LysA 0.73 PGA1_c29490 dihydroxy-acid dehydratase LivD — —
Dinoroseobacter shibae DFL-12 0.46 Dshi_3059 diaminopimelate decarboxylase (RefSeq) 0.29 Dshi_0129 dihydroxy-acid dehydratase (RefSeq) — —
Magnetospirillum magneticum AMB-1 0.46 AMB_RS22725 diaminopimelate decarboxylase 0.70 AMB_RS12770 dihydroxy-acid dehydratase — —
Rhizobium sp. OAE497 0.45 ABIE40_RS17530 diaminopimelate decarboxylase 0.76 ABIE40_RS08005 dihydroxy-acid dehydratase 0.91 44
Rhodospirillum rubrum S1H 0.43 Rru_A0396 Diaminopimelate decarboxylase (NCBI) 0.70 Rru_A1786 Dihydroxy-acid dehydratase (NCBI) — —
Caulobacter crescentus NA1000 Δfur 0.42 CCNA_02296 diaminopimelate decarboxylase 0.72 CCNA_03139 dihydroxy-acid dehydratase — —
Caulobacter crescentus NA1000 0.42 CCNA_02296 diaminopimelate decarboxylase 0.72 CCNA_03139 dihydroxy-acid dehydratase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.41 A4249_RS12545 diaminopimelate decarboxylase 0.25 A4249_RS10030 dihydroxy-acid dehydratase 0.99 17
Rhodanobacter denitrificans FW104-10B01 0.40 LRK54_RS11485 diaminopimelate decarboxylase 0.25 LRK54_RS10320 dihydroxy-acid dehydratase low > 59
Dyella japonica UNC79MFTsu3.2 0.40 ABZR86_RS12130 diaminopimelate decarboxylase 0.27 ABZR86_RS15945 dihydroxy-acid dehydratase low > 74
Bosea sp. OAE506 0.40 ABIE41_RS08740 diaminopimelate decarboxylase 0.30 ABIE41_RS15690 dihydroxy-acid dehydratase — —
Rhodanobacter denitrificans MT42 0.40 LRK55_RS11215 diaminopimelate decarboxylase 0.25 LRK55_RS09960 dihydroxy-acid dehydratase low > 63
Sphingomonas koreensis DSMZ 15582 0.40 Ga0059261_2051 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.28 Ga0059261_4216 Dihydroxyacid dehydratase/phosphogluconate dehydratase 0.99 3
Rhodanobacter sp. FW510-T8 0.39 OKGIIK_12375 lysA diaminopimelate decarboxylase 0.27 OKGIIK_13600 ilvD dihydroxy-acid dehydratase 0.51 20
Lysobacter sp. OAE881 0.39 ABIE51_RS13675 diaminopimelate decarboxylase 0.27 ABIE51_RS17540 dihydroxy-acid dehydratase low > 62
Methanococcus maripaludis JJ 0.36 MMJJ_RS08170 diaminopimelate decarboxylase 0.33 MMJJ_RS03675 dihydroxy-acid dehydratase — —
Methanococcus maripaludis S2 0.36 MMP_RS06180 diaminopimelate decarboxylase 0.33 MMP_RS01700 dihydroxy-acid dehydratase — —
Bacteroides stercoris CC31F 0.31 HMPREF1181_RS11050 diaminopimelate decarboxylase 0.62 HMPREF1181_RS08335 dihydroxy-acid dehydratase 0.88 41
Pontibacter actiniarum KMM 6156, DSM 19842 0.31 CA264_02390 diaminopimelate decarboxylase 0.27 CA264_06935 dihydroxy-acid dehydratase low > 74
Bacteroides ovatus ATCC 8483 0.31 BACOVA_00215 diaminopimelate decarboxylase 0.60 BACOVA_03302 dihydroxy-acid dehydratase 0.97 5
Bacteroides thetaiotaomicron VPI-5482 0.31 BT1374 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.61 BT2078 dihydroxy-acid dehydratase (NCBI ptt file) 0.52 47
Parabacteroides merdae CL09T00C40 0.31 HMPREF1078_RS13545 diaminopimelate decarboxylase 0.63 HMPREF1078_RS16695 dihydroxy-acid dehydratase low > 61
Pedobacter sp. GW460-11-11-14-LB5 0.30 CA265_RS09650 diaminopimelate decarboxylase 0.27 CA265_RS15795 dihydroxy-acid dehydratase 0.90 3
Mucilaginibacter yixingensis YX-36 DSM 26809 0.30 ABZR88_RS10180 diaminopimelate decarboxylase 0.27 ABZR88_RS11575 dihydroxy-acid dehydratase — —
Phocaeicola dorei CL03T12C01 0.30 ABI39_RS19950 diaminopimelate decarboxylase 0.62 ABI39_RS12715 dihydroxy-acid dehydratase 0.69 9
Phocaeicola vulgatus CL09T03C04 0.30 HMPREF1058_RS06195 diaminopimelate decarboxylase 0.62 HMPREF1058_RS16815 dihydroxy-acid dehydratase low > 67
Echinicola vietnamensis KMM 6221, DSM 17526 0.26 Echvi_1295 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.28 Echvi_2055 dihydroxy-acid dehydratase 0.94 2
Synechococcus elongatus PCC 7942 0.23 Synpcc7942_0262 lysA diaminopimelate decarboxylase 0.74 Synpcc7942_0626 ilvD dihydroxy-acid dehydratase — —
Rahnella sp. WP5 0.22 EX31_RS02420 type III PLP-dependent enzyme 0.69 EX31_RS15005 dihydroxy-acid dehydratase low > 89
Dickeya dianthicola ME23 0.22 DZA65_RS00505 type III PLP-dependent enzyme 0.72 DZA65_RS21335 dihydroxy-acid dehydratase low > 75
Mycobacterium tuberculosis H37Rv 0.21 Rv1293 Diaminopimelate decarboxylase LysA (DAP decarboxylase) 0.32 Rv0189c Probable dihydroxy-acid dehydratase IlvD (dad) — —
Dickeya dianthicola 67-19 0.21 HGI48_RS00505 type III PLP-dependent enzyme 0.73 HGI48_RS20295 dihydroxy-acid dehydratase low > 71
Dickeya dadantii 3937 0.21 DDA3937_RS20740 type III PLP-dependent enzyme 0.73 DDA3937_RS20155 dihydroxy-acid dehydratase low > 74

Not shown: 0 genomes with orthologs for PP_5227 only; 24 genomes with orthologs for PP_5128 only