Conservation of cofitness between PP_1426 and PP_1988 in Pseudomonas putida KT2440

91 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1426 L-aspartate oxidase 1.0 PP_1988 3-isopropylmalate dehydrogenase 0.45 20
Pseudomonas fluorescens SBW25-INTG 0.90 PFLU_RS07225 L-aspartate oxidase 0.93 PFLU_RS20565 3-isopropylmalate dehydrogenase low > 109
Pseudomonas fluorescens SBW25 0.90 PFLU_RS07225 L-aspartate oxidase 0.93 PFLU_RS20565 3-isopropylmalate dehydrogenase low > 109
Pseudomonas fluorescens FW300-N2E3 0.90 AO353_17620 L-aspartate oxidase 0.92 AO353_20635 3-isopropylmalate dehydrogenase 0.28 95
Pseudomonas simiae WCS417 0.90 PS417_07115 L-aspartate oxidase 0.93 PS417_18585 3-isopropylmalate dehydrogenase 0.53 7
Pseudomonas fluorescens GW456-L13 0.89 PfGW456L13_4517 L-aspartate oxidase (EC 1.4.3.16) 0.93 PfGW456L13_3945 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 87
Pseudomonas sp. RS175 0.89 PFR28_00689 L-aspartate oxidase 0.93 PFR28_02821 3-isopropylmalate dehydrogenase low > 88
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_3322 L-aspartate oxidase (EC 1.4.3.16) 0.93 Pf1N1B4_12 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.89 Psyr_3959 L-aspartate oxidase 0.91 Psyr_1985 3-isopropylmalate dehydrogenase low > 86
Pseudomonas syringae pv. syringae B728a 0.89 Psyr_3959 L-aspartate oxidase 0.91 Psyr_1985 3-isopropylmalate dehydrogenase 0.56 26
Pseudomonas fluorescens FW300-N2C3 0.88 AO356_04580 L-aspartate oxidase 0.94 AO356_21415 3-isopropylmalate dehydrogenase low > 104
Pseudomonas sp. S08-1 0.87 OH686_20040 L-aspartate oxidase 0.87 OH686_04470 3-isopropylmalate dehydrogenase low > 80
Pseudomonas stutzeri RCH2 0.86 Psest_3101 L-aspartate oxidase 0.87 Psest_2589 3-isopropylmalate dehydrogenase 0.19 57
Pseudomonas fluorescens FW300-N2E2 0.85 Pf6N2E2_2758 L-aspartate oxidase (EC 1.4.3.16) 0.94 Pf6N2E2_66 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.28 36
Marinobacter adhaerens HP15 0.72 HP15_774 L-aspartate oxidase 0.73 HP15_1832 3-isopropylmalate dehydrogenase low > 73
Kangiella aquimarina DSM 16071 0.67 B158DRAFT_2179 L-aspartate oxidase (EC 1.4.3.16) 0.70 B158DRAFT_1322 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 40
Shewanella amazonensis SB2B 0.67 Sama_0873 L-aspartate oxidase (RefSeq) 0.52 Sama_0336 3-isopropylmalate dehydrogenase (RefSeq) — —
Vibrio cholerae E7946 ATCC 55056 0.67 CSW01_12495 L-aspartate oxidase 0.53 CSW01_12600 3-isopropylmalate dehydrogenase 0.60 8
Shewanella oneidensis MR-1 0.66 SO1341 nadB L-aspartate oxidase (NCBI ptt file) 0.53 SO4235 leuB 3-isopropylmalate dehydrogenase (NCBI ptt file) 0.37 74
Shewanella sp. ANA-3 0.66 Shewana3_3033 L-aspartate oxidase (RefSeq) 0.53 Shewana3_3760 3-isopropylmalate dehydrogenase (RefSeq) — —
Shewanella loihica PV-4 0.66 Shew_1047 L-aspartate oxidase (RefSeq) 0.53 Shew_3471 3-isopropylmalate dehydrogenase (RefSeq) — —
Serratia liquefaciens MT49 0.66 IAI46_19590 L-aspartate oxidase 0.53 IAI46_03350 3-isopropylmalate dehydrogenase low > 86
Dickeya dianthicola 67-19 0.66 HGI48_RS15855 L-aspartate oxidase 0.52 HGI48_RS18060 3-isopropylmalate dehydrogenase 0.78 37
Dickeya dadantii 3937 0.66 DDA3937_RS15770 L-aspartate oxidase 0.52 DDA3937_RS18120 3-isopropylmalate dehydrogenase low > 74
Dickeya dianthicola ME23 0.65 DZA65_RS16935 L-aspartate oxidase 0.52 DZA65_RS19205 3-isopropylmalate dehydrogenase 0.71 49
Paraburkholderia graminis OAS925 0.65 ABIE53_003292 L-aspartate oxidase 0.65 ABIE53_004804 3-isopropylmalate dehydrogenase 0.36 16
Paraburkholderia sabiae LMG 24235 0.65 QEN71_RS03070 L-aspartate oxidase 0.63 QEN71_RS17620 3-isopropylmalate dehydrogenase 0.56 99
Paraburkholderia bryophila 376MFSha3.1 0.65 H281DRAFT_04069 L-aspartate oxidase 0.65 H281DRAFT_06072 3-isopropylmalate dehydrogenase 0.46 19
Pectobacterium carotovorum WPP14 0.65 HER17_RS05775 L-aspartate oxidase 0.52 HER17_RS03080 3-isopropylmalate dehydrogenase 0.88 34
Pantoea sp. MT58 0.64 IAI47_04845 L-aspartate oxidase 0.50 IAI47_16005 3-isopropylmalate dehydrogenase 0.73 42
Klebsiella michiganensis M5al 0.64 BWI76_RS21360 L-aspartate oxidase 0.53 BWI76_RS04675 3-isopropylmalate dehydrogenase 0.34 76
Enterobacter asburiae PDN3 0.64 EX28DRAFT_0071 L-aspartate oxidase (EC 1.4.3.16) 0.54 EX28DRAFT_3669 3-isopropylmalate dehydrogenase low > 76
Enterobacter sp. TBS_079 0.64 MPMX20_03445 L-aspartate oxidase 0.54 MPMX20_00768 3-isopropylmalate dehydrogenase 0.36 30
Ralstonia solanacearum PSI07 0.64 RPSI07_RS12660 L-aspartate oxidase 0.63 RPSI07_RS14705 3-isopropylmalate dehydrogenase low > 81
Burkholderia phytofirmans PsJN 0.64 BPHYT_RS15640 L-aspartate oxidase 0.64 BPHYT_RS33900 3-isopropylmalate dehydrogenase 0.41 17
Cupriavidus basilensis FW507-4G11 0.64 RR42_RS17010 L-aspartate oxidase 0.64 RR42_RS14385 3-isopropylmalate dehydrogenase low > 128
Dechlorosoma suillum PS 0.64 Dsui_2452 L-aspartate oxidase 0.68 Dsui_3198 3-isopropylmalate dehydrogenase — —
Ralstonia solanacearum UW163 0.64 UW163_RS08945 L-aspartate oxidase 0.64 UW163_RS11115 3-isopropylmalate dehydrogenase — —
Rahnella sp. WP5 0.64 EX31_RS21795 L-aspartate oxidase 0.53 EX31_RS03685 3-isopropylmalate dehydrogenase 0.67 44
Ralstonia solanacearum IBSBF1503 0.64 RALBFv3_RS04725 L-aspartate oxidase 0.64 RALBFv3_RS02610 3-isopropylmalate dehydrogenase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.64 GFF2106 L-aspartate oxidase (EC 1.4.3.16) 0.54 GFF165 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 78
Ralstonia solanacearum GMI1000 0.64 RS_RS12285 L-aspartate oxidase 0.64 RS_RS09990 3-isopropylmalate dehydrogenase low > 80
Acinetobacter radioresistens SK82 0.64 MPMX26_02162 L-aspartate oxidase 0.73 MPMX26_00348 3-isopropylmalate dehydrogenase low > 36
Escherichia coli ECRC101 0.64 OKFHMN_21370 nadB L-aspartate oxidase 0.54 OKFHMN_10720 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli ECRC98 0.64 JDDGAC_25035 nadB L-aspartate oxidase 0.54 JDDGAC_14315 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli ECOR27 0.64 NOLOHH_13045 nadB L-aspartate oxidase 0.54 NOLOHH_03065 leuA 2-isopropylmalate synthase low > 57
Escherichia coli ECRC101 0.64 MCAODC_11900 nadB L-aspartate oxidase 0.54 MCAODC_01235 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli ECRC99 0.64 KEDOAH_06850 nadB L-aspartate oxidase 0.54 KEDOAH_17435 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli ECRC102 0.64 NIAGMN_19140 nadB L-aspartate oxidase 0.54 NIAGMN_08570 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli ECRC62 0.64 BNILDI_11845 nadB L-aspartate oxidase 0.54 BNILDI_08545 leuA 2-isopropylmalate synthase — —
Escherichia coli ECOR38 0.64 HEPCGN_20515 nadB L-aspartate oxidase 0.54 HEPCGN_08700 leuB 3-isopropylmalate dehydrogenase low > 85
Escherichia coli BW25113 0.64 b2574 nadB L-aspartate oxidase (NCBI) 0.54 b0073 leuB 3-isopropylmalate dehydrogenase (VIMSS) 0.60 33
Ralstonia sp. UNC404CL21Col 0.64 ABZR87_RS00345 L-aspartate oxidase 0.65 ABZR87_RS14530 3-isopropylmalate dehydrogenase low > 80
Escherichia coli BL21 0.64 ECD_02468 quinolinate synthase, L-aspartate oxidase (B protein) subunit 0.54 ECD_00075 3-isopropylmalate dehydrogenase, NAD(+)-dependent low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.64 OHPLBJKB_01133 L-aspartate oxidase 0.54 OHPLBJKB_03584 3-isopropylmalate dehydrogenase low > 73
Escherichia coli Nissle 1917 0.64 ECOLIN_RS14570 L-aspartate oxidase 0.54 ECOLIN_RS00395 3-isopropylmalate dehydrogenase low > 52
Escherichia fergusonii Becca 0.63 EFB2_01322 L-aspartate oxidase 0.54 EFB2_03972 3-isopropylmalate dehydrogenase low > 86
Herbaspirillum seropedicae SmR1 0.63 HSERO_RS11085 L-aspartate oxidase 0.65 HSERO_RS16500 3-isopropylmalate dehydrogenase 0.73 7
Variovorax sp. SCN45 0.62 GFF2580 L-aspartate oxidase (EC 1.4.3.16) 0.64 GFF3888 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.61 GFF1214 L-aspartate oxidase (EC 1.4.3.16) 0.63 GFF3360 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 90
Alteromonas macleodii MIT1002 0.61 MIT1002_02720 L-aspartate oxidase 0.51 MIT1002_00948 3-isopropylmalate dehydrogenase — —
Magnetospirillum magneticum AMB-1 0.60 AMB_RS19650 L-aspartate oxidase 0.56 AMB_RS20570 3-isopropylmalate dehydrogenase — —
Variovorax sp. OAS795 0.59 ABID97_RS07440 L-aspartate oxidase 0.64 ABID97_RS08455 3-isopropylmalate dehydrogenase — —
Acidovorax sp. GW101-3H11 0.57 Ac3H11_3824 L-aspartate oxidase (EC 1.4.3.16) 0.64 Ac3H11_1528 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.66 25
Castellaniella sp019104865 MT123 0.57 ABCV34_RS03690 L-aspartate oxidase 0.63 ABCV34_RS04280 3-isopropylmalate dehydrogenase low > 48
Sphingomonas koreensis DSMZ 15582 0.56 Ga0059261_2248 L-aspartate oxidase (EC 1.4.3.16) 0.56 Ga0059261_3190 3-isopropylmalate dehydrogenase — —
Pedobacter sp. GW460-11-11-14-LB5 0.45 CA265_RS21185 L-aspartate oxidase 0.49 CA265_RS15850 3-isopropylmalate dehydrogenase low > 88
Phocaeicola dorei CL03T12C01 0.45 ABI39_RS05945 L-aspartate oxidase 0.43 ABI39_RS10215 3-isopropylmalate dehydrogenase — —
Phocaeicola vulgatus CL09T03C04 0.44 HMPREF1058_RS11085 L-aspartate oxidase 0.43 HMPREF1058_RS14565 3-isopropylmalate dehydrogenase — —
Parabacteroides merdae CL09T00C40 0.44 HMPREF1078_RS06605 L-aspartate oxidase 0.45 HMPREF1078_RS16640 3-isopropylmalate dehydrogenase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.44 ABZR88_RS20645 L-aspartate oxidase 0.49 ABZR88_RS11605 3-isopropylmalate dehydrogenase — —
Bacteroides stercoris CC31F 0.44 HMPREF1181_RS01800 L-aspartate oxidase 0.44 HMPREF1181_RS14125 3-isopropylmalate dehydrogenase — —
Bacteroides thetaiotaomicron VPI-5482 0.44 BT3184 L-aspartate oxidase (NCBI ptt file) 0.43 BT1857 3-isopropylmalate dehydrogenase (NCBI ptt file) 0.78 33
Bacteroides ovatus ATCC 8483 0.43 BACOVA_02888 L-aspartate oxidase 0.42 BACOVA_04600 3-isopropylmalate dehydrogenase 0.85 10
Desulfovibrio vulgaris Miyazaki F 0.35 DvMF_0526 L-aspartate oxidase (RefSeq) 0.61 DvMF_1794 3-isopropylmalate dehydrogenase (RefSeq) — —
Desulfovibrio vulgaris Hildenborough JW710 0.35 DVU1809 nadB L-aspartate oxidase (TIGR) 0.57 DVU2985 leuB 3-isopropylmalate dehydrogenase (TIGR) — —
Synechococcus elongatus PCC 7942 0.34 Synpcc7942_1881 nadB L-aspartate oxidase 0.58 Synpcc7942_1505 leuB 3-isopropylmalate dehydrogenase — —
Sinorhizobium meliloti 1021 0.29 SMc02599 L-aspartate oxidase 0.58 SMc04405 3-isopropylmalate dehydrogenase 0.39 27
Bifidobacterium breve UCC2003 0.26 BBR_RS16725 L-aspartate oxidase 0.25 BBR_RS12870 3-isopropylmalate dehydrogenase low > 34
Methanococcus maripaludis S2 0.26 MMP_RS06565 fumarate reductase subunit A 0.28 MMP_RS02855 3-isopropylmalate dehydrogenase — —
Azospirillum sp. SherDot2 0.26 MPMX19_05671 L-aspartate oxidase 0.57 MPMX19_00607 3-isopropylmalate dehydrogenase low > 112
Methanococcus maripaludis JJ 0.25 MMJJ_RS07785 fumarate reductase subunit A 0.29 MMJJ_RS02220 3-isopropylmalate dehydrogenase — —
Rhodospirillum rubrum S1H 0.25 Rru_A1433 L-aspartate oxidase (NCBI) 0.56 Rru_A1191 3-isopropylmalate dehydrogenase (NCBI) 0.70 14
Agrobacterium fabrum C58 0.25 Atu4097 L-aspartate oxidase 0.57 Atu2791 3-isopropylmalate dehydrogenase 0.71 27
Mycobacterium tuberculosis H37Rv 0.25 Rv1595 Probable L-aspartate oxidase NadB 0.27 Rv2995c Probable 3-isopropylmalate dehydrogenase LeuB (beta-IPM dehydrogenase) (IMDH) (3-IPM-DH) — —
Rhodopseudomonas palustris CGA009 0.25 TX73_005420 L-aspartate oxidase 0.53 TX73_001175 3-isopropylmalate dehydrogenase — —
Caulobacter crescentus NA1000 0.21 CCNA_03007 L-aspartate oxidase 0.51 CCNA_00193 3-isopropylmalate dehydrogenase — —
Caulobacter crescentus NA1000 Δfur 0.21 CCNA_03007 L-aspartate oxidase 0.51 CCNA_00193 3-isopropylmalate dehydrogenase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.21 A4249_RS00630 L-aspartate oxidase 0.43 A4249_RS09995 3-isopropylmalate dehydrogenase low > 48
Azospirillum brasilense Sp245 0.20 AZOBR_RS18685 L-aspartate oxidase 0.55 AZOBR_RS14130 3-isopropylmalate dehydrogenase low > 97
Pontibacter actiniarum KMM 6156, DSM 19842 0.13 CA264_10795 succinate dehydrogenase flavoprotein subunit 0.43 CA264_09445 3-isopropylmalate dehydrogenase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.12 Echvi_2795 succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup 0.46 Echvi_2062 3-isopropylmalate dehydrogenase — —

Not shown: 0 genomes with orthologs for PP_1426 only; 11 genomes with orthologs for PP_1988 only