Conservation of cofitness between PP_5217 and PP_1655 in Pseudomonas putida KT2440

94 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5217 Polyphosphate kinase 1.0 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.48 1
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_4453 Polyphosphate kinase (EC 2.7.4.1) 0.72 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 low > 103
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_0293 Polyphosphate kinase 0.71 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_0293 Polyphosphate kinase 0.71 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase low > 86
Pseudomonas fluorescens FW300-N1B4 0.90 Pf1N1B4_2208 Polyphosphate kinase (EC 2.7.4.1) 0.72 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 low > 87
Pseudomonas fluorescens GW456-L13 0.90 PfGW456L13_874 Polyphosphate kinase (EC 2.7.4.1) 0.69 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 low > 87
Pseudomonas fluorescens FW300-N2E3 0.90 AO353_08885 polyphosphate kinase 0.69 AO353_02715 23S rRNA methyltransferase low > 101
Pseudomonas fluorescens FW300-N2C3 0.90 AO356_12895 polyphosphate kinase 0.72 AO356_19055 23S rRNA methyltransferase low > 104
Pseudomonas sp. RS175 0.90 PFR28_04345 Polyphosphate kinase 0.72 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 50
Pseudomonas fluorescens SBW25-INTG 0.90 PFLU_RS29095 polyphosphate kinase 1 0.73 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 109
Pseudomonas fluorescens SBW25 0.90 PFLU_RS29095 polyphosphate kinase 1 0.73 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 109
Pseudomonas simiae WCS417 0.89 PS417_27435 polyphosphate kinase 0.72 PS417_20155 23S rRNA methyltransferase low > 88
Pseudomonas stutzeri RCH2 0.85 Psest_3732 polyphosphate kinase 1 0.69 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA low > 67
Pseudomonas sp. S08-1 0.84 OH686_13995 polyphosphate kinase 1 0.72 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA low > 80
Dyella japonica UNC79MFTsu3.2 0.69 ABZR86_RS07490 polyphosphate kinase 1 0.35 ABZR86_RS07120 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 74
Rhodanobacter denitrificans FW104-10B01 0.68 LRK54_RS16000 polyphosphate kinase 1 0.35 LRK54_RS17000 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 59
Rhodanobacter denitrificans MT42 0.68 LRK55_RS15755 polyphosphate kinase 1 0.36 LRK55_RS16715 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 63
Rhodanobacter sp. FW510-T8 0.68 OKGIIK_08995 ppk1 RNA degradosome polyphosphate kinase 0.35 OKGIIK_07840 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 52
Marinobacter adhaerens HP15 0.59 HP15_3334 polyphosphate kinase 0.40 HP15_790 23S rRNA 5-methyluridine methyltransferase low > 73
Acinetobacter radioresistens SK82 0.57 MPMX26_02335 Polyphosphate kinase 0.38 MPMX26_00538 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 36
Dechlorosoma suillum PS 0.51 Dsui_2814 polyphosphate kinase 1 0.31 Dsui_1981 23S rRNA (uracil-5-)-methyltransferase RumA low > 51
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_2312 polyphosphate kinase 1 0.37 B158DRAFT_2275 23S rRNA (uracil-5-)-methyltransferase RumA low > 40
Lysobacter sp. OAE881 0.49 ABIE51_RS14230 polyphosphate kinase 1 0.34 ABIE51_RS13830 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 62
Cupriavidus basilensis FW507-4G11 0.49 RR42_RS31480 polyphosphate kinase 0.32 RR42_RS13170 23S rRNA methyltransferase low > 128
Xanthomonas campestris pv. campestris strain 8004 0.48 Xcc-8004.4064.1 Polyphosphate kinase (EC 2.7.4.1) 0.35 Xcc-8004.3669.1 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) low > 74
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS06305 polyphosphate kinase 0.31 HSERO_RS14825 23S rRNA methyltransferase low > 78
Ralstonia sp. UNC404CL21Col 0.47 ABZR87_RS14065 polyphosphate kinase 1 0.33 ABZR87_RS10885 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 80
Ralstonia solanacearum PSI07 0.47 RPSI07_RS15330 polyphosphate kinase 1 0.31 RPSI07_RS18130 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 81
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS02115 polyphosphate kinase 1 0.31 RALBFv3_RS15245 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 76
Ralstonia solanacearum UW163 0.46 UW163_RS15425 polyphosphate kinase 1 0.31 UW163_RS12710 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS14110 polyphosphate kinase 0.33 BPHYT_RS09125 23S rRNA methyltransferase low > 109
Paraburkholderia sabiae LMG 24235 0.46 QEN71_RS04860 polyphosphate kinase 1 0.33 QEN71_RS22225 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 153
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_04418 polyphosphate kinase 0.33 H281DRAFT_00846 23S rRNA m(5)U-1939 methyltransferase low > 103
Ralstonia solanacearum GMI1000 0.46 RS_RS07705 polyphosphate kinase 1 0.31 RS_RS06055 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 80
Castellaniella sp019104865 MT123 0.45 ABCV34_RS15580 polyphosphate kinase 1 0.33 ABCV34_RS03050 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 48
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF4226 Polyphosphate kinase (EC 2.7.4.1) 0.29 GFF3883 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) low > 90
Acidovorax sp. GW101-3H11 0.41 Ac3H11_452 Polyphosphate kinase (EC 2.7.4.1) 0.29 Ac3H11_2847 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) low > 79
Variovorax sp. SCN45 0.40 GFF1089 Polyphosphate kinase (EC 2.7.4.1) 0.29 GFF2841 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) low > 127
Bifidobacterium breve UCC2003 0.37 BBR_RS19645 RNA degradosome polyphosphate kinase 0.13 BBR_RS16615 class I SAM-dependent RNA methyltransferase low > 34
Synechococcus elongatus PCC 7942 0.36 Synpcc7942_1566 ppk polyphosphate kinase 0.19 Synpcc7942_0241 rumA 23S rRNA (uracil-5-)-methyltransferase RumA low > 38
Rhodospirillum rubrum S1H 0.35 Rru_A2161 Polyphosphate kinase (NCBI) 0.14 Rru_A2107 23S rRNA (uracil-5-)-methyltransferase RumA (NCBI) — —
Bosea sp. OAE506 0.35 ABIE41_RS16125 RNA degradosome polyphosphate kinase 0.13 ABIE41_RS22255 RNA methyltransferase low > 77
Magnetospirillum magneticum AMB-1 0.34 AMB_RS14295 RNA degradosome polyphosphate kinase 0.16 AMB_RS01660 class I SAM-dependent RNA methyltransferase low > 64
Caulobacter crescentus NA1000 Δfur 0.34 CCNA_01782 polyphosphate kinase 1 0.16 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein low > 67
Caulobacter crescentus NA1000 0.34 CCNA_01782 polyphosphate kinase 1 0.16 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein low > 66
Sinorhizobium meliloti 1021 0.34 SMc00618 polyphosphate kinase 0.16 SMc00974 RNA methyltransferase low > 103
Dinoroseobacter shibae DFL-12 0.33 Dshi_0740 Polyphosphate kinase (RefSeq) 0.13 Dshi_3492 (Uracil-5)-methyltransferase (RefSeq) low > 64
Rhodopseudomonas palustris CGA009 0.33 TX73_015770 RNA degradosome polyphosphate kinase 0.15 TX73_004885 methyltransferase low > 86
Azospirillum brasilense Sp245 0.33 AZOBR_RS16235 polyphosphate kinase 0.14 AZOBR_RS01195 RNA methyltransferase low > 97
Rhizobium sp. OAE497 0.33 ABIE40_RS06575 RNA degradosome polyphosphate kinase 0.16 ABIE40_RS03880 class I SAM-dependent RNA methyltransferase low > 107
Sphingomonas koreensis DSMZ 15582 0.33 Ga0059261_0225 polyphosphate kinase 1 0.12 Ga0059261_0648 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase low > 68
Azospirillum sp. SherDot2 0.33 MPMX19_01149 Polyphosphate kinase 0.14 MPMX19_02196 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 112
Mycobacterium tuberculosis H37Rv 0.32 Rv2984 Polyphosphate kinase PPK (polyphosphoric acid kinase) (ATP-polyphosphate phosphotransferase) 0.10 Rv2689c Conserved alanine and valine and glycine rich protein — —
Brevundimonas sp. GW460-12-10-14-LB2 0.32 A4249_RS08195 RNA degradosome polyphosphate kinase 0.12 A4249_RS08425 class I SAM-dependent RNA methyltransferase — —
Agrobacterium fabrum C58 0.32 Atu1144 polyphosphate kinase 0.16 Atu0735 RNA methyltransferase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.29 CA264_11200 RNA degradosome polyphosphate kinase 0.17 CA264_02005 23S rRNA (uracil-5-)-methyltransferase RumA low > 74
Echinicola vietnamensis KMM 6221, DSM 17526 0.29 Echvi_2996 polyphosphate kinase 1 0.18 Echvi_0172 23S rRNA (uracil-5-)-methyltransferase RumA low > 79
Mucilaginibacter yixingensis YX-36 DSM 26809 0.28 ABZR88_RS04845 polyphosphate kinase 1 0.19 ABZR88_RS21250 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 71
Escherichia coli ECRC98 0.27 JDDGAC_25745 ppk1 polyphosphate kinase 1 0.34 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.27 OHPLBJKB_01225 Polyphosphate kinase 0.34 OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 73
Escherichia coli BL21 0.27 ECD_02393 polyphosphate kinase, component of RNA degradosome 0.34 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent low > 60
Escherichia coli ECRC99 0.27 KEDOAH_06420 ppk1 polyphosphate kinase 1 0.34 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Escherichia coli ECRC101 0.27 MCAODC_12330 ppk1 polyphosphate kinase 1 0.34 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Escherichia coli ECRC62 0.27 BNILDI_12260 ppk1 polyphosphate kinase 1 0.34 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Escherichia coli ECRC102 0.27 NIAGMN_19570 ppk1 polyphosphate kinase 1 0.34 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Escherichia coli ECRC101 0.27 OKFHMN_21800 ppk1 polyphosphate kinase 1 0.34 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Escherichia coli ECOR38 0.27 HEPCGN_20965 ppk1 polyphosphate kinase 1 0.35 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 85
Escherichia coli Nissle 1917 0.27 ECOLIN_RS14200 polyphosphate kinase 1 0.34 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 52
Escherichia coli BW25113 0.27 b2501 ppk polyphosphate kinase (NCBI) 0.34 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) low > 76
Escherichia coli ECOR27 0.27 NOLOHH_13450 ppk1 polyphosphate kinase 1 0.34 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Escherichia fergusonii Becca 0.27 EFB2_01397 Polyphosphate kinase 0.34 EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.49 37
Pectobacterium carotovorum WPP14 0.27 HER17_RS06425 polyphosphate kinase 1 0.35 HER17_RS04110 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 75
Dickeya dadantii 3937 0.27 DDA3937_RS15150 polyphosphate kinase 1 0.34 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 74
Klebsiella michiganensis M5al 0.27 BWI76_RS20995 RNA degradosome polyphosphate kinase 0.33 BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase low > 92
Dickeya dianthicola ME23 0.27 DZA65_RS16045 polyphosphate kinase 1 0.33 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 75
Pedobacter sp. GW460-11-11-14-LB5 0.27 CA265_RS09830 polyphosphate kinase 1 0.16 CA265_RS25340 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 88
Dickeya dianthicola 67-19 0.27 HGI48_RS15225 polyphosphate kinase 1 0.32 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 71
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.27 GFF2167 Polyphosphate kinase (EC 2.7.4.1) 0.34 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) low > 78
Serratia liquefaciens MT49 0.26 IAI46_18915 polyphosphate kinase 1 0.37 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 86
Enterobacter sp. TBS_079 0.26 MPMX20_03356 Polyphosphate kinase 0.35 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 85
Rahnella sp. WP5 0.26 EX31_RS22680 polyphosphate kinase 1 0.34 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 89
Enterobacter asburiae PDN3 0.26 EX28DRAFT_0166 polyphosphate kinase 1 0.35 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA low > 76
Pantoea sp. MT58 0.26 IAI47_05155 polyphosphate kinase 1 0.36 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 76
Vibrio cholerae E7946 ATCC 55056 0.26 CSW01_03780 polyphosphate kinase 1 0.40 CSW01_12410 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 62
Parabacteroides merdae CL09T00C40 0.26 HMPREF1078_RS16770 RNA degradosome polyphosphate kinase 0.15 HMPREF1078_RS02375 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 61
Alteromonas macleodii MIT1002 0.26 MIT1002_00872 Polyphosphate kinase 0.31 MIT1002_00793 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 70
Erwinia tracheiphila SCR3 0.25 LU632_RS08260 ppk1 polyphosphate kinase 1 0.35 LU632_RS06345 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 74
Bacteroides ovatus ATCC 8483 0.25 BACOVA_03769 polyphosphate kinase 1 0.17 BACOVA_02267 23S rRNA (uracil-5-)-methyltransferase RumA low > 94
Bacteroides thetaiotaomicron VPI-5482 0.25 BT0541 Polyphosphate kinase (NCBI ptt file) 0.17 BT0643 RNA methyltransferase (NCBI ptt file) low > 81
Shewanella amazonensis SB2B 0.25 Sama_2011 polyphosphate kinase (RefSeq) 0.38 Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) low > 62
Shewanella sp. ANA-3 0.25 Shewana3_2417 polyphosphate kinase (RefSeq) 0.37 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) low > 73
Shewanella loihica PV-4 0.25 Shew_3079 polyphosphate kinase (RefSeq) 0.37 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) low > 60
Bacteroides stercoris CC31F 0.24 HMPREF1181_RS08035 RNA degradosome polyphosphate kinase 0.16 HMPREF1181_RS16525 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 56
Phocaeicola dorei CL03T12C01 0.24 ABI39_RS14955 RNA degradosome polyphosphate kinase 0.16 ABI39_RS17490 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 72
Phocaeicola vulgatus CL09T03C04 0.23 HMPREF1058_RS02340 RNA degradosome polyphosphate kinase 0.15 HMPREF1058_RS03720 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 67

Not shown: 2 genomes with orthologs for PP_5217 only; 4 genomes with orthologs for PP_1655 only