Conservation of cofitness between PP_1215 and PP_1217 in Pseudomonas putida KT2440

93 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1215 Crossover junction endodeoxyribonuclease RuvC 1.0 PP_1217 Holliday junction ATP-dependent DNA helicase RuvB 0.55 1
Pseudomonas syringae pv. syringae B728a 0.90 Psyr_1408 Holliday junction endonuclease RuvC 0.87 Psyr_1410 Holliday junction DNA helicase RuvB 0.58 2
Pseudomonas syringae pv. syringae B728a ΔmexB 0.90 Psyr_1408 Holliday junction endonuclease RuvC 0.87 Psyr_1410 Holliday junction DNA helicase RuvB low > 86
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_639 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.89 Pf1N1B4_637 Holliday junction DNA helicase RuvB — —
Pseudomonas fluorescens FW300-N2E3 0.88 AO353_03590 crossover junction endodeoxyribonuclease RuvC 0.89 AO353_03580 ATP-dependent DNA helicase RuvB 0.56 1
Pseudomonas fluorescens FW300-N2E2 0.87 Pf6N2E2_5535 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.88 Pf6N2E2_5537 Holliday junction DNA helicase RuvB — —
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_18015 crossover junction endodeoxyribonuclease RuvC 0.88 AO356_18025 ATP-dependent DNA helicase RuvB — —
Pseudomonas fluorescens GW456-L13 0.87 PfGW456L13_1851 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.89 PfGW456L13_1853 Holliday junction DNA helicase RuvB 0.44 3
Pseudomonas sp. RS175 0.87 PFR28_03414 Crossover junction endodeoxyribonuclease RuvC 0.88 PFR28_03412 Holliday junction ATP-dependent DNA helicase RuvB 0.56 1
Pseudomonas fluorescens SBW25-INTG 0.86 PFLU_RS24095 crossover junction endodeoxyribonuclease RuvC 0.89 PFLU_RS24085 Holliday junction branch migration DNA helicase RuvB 0.66 2
Pseudomonas simiae WCS417 0.86 PS417_22455 crossover junction endodeoxyribonuclease RuvC 0.89 PS417_22445 ATP-dependent DNA helicase RuvB — —
Pseudomonas fluorescens SBW25 0.86 PFLU_RS24095 crossover junction endodeoxyribonuclease RuvC 0.89 PFLU_RS24085 Holliday junction branch migration DNA helicase RuvB low > 109
Pseudomonas stutzeri RCH2 0.86 Psest_1495 crossover junction endodeoxyribonuclease RuvC 0.85 Psest_1497 Holliday junction DNA helicase, RuvB subunit — —
Pseudomonas sp. S08-1 0.85 OH686_19125 crossover junction endodeoxyribonuclease RuvC 0.85 OH686_19135 Holliday junction DNA helicase RuvB 0.59 3
Vibrio cholerae E7946 ATCC 55056 0.56 CSW01_09250 crossover junction endodeoxyribonuclease RuvC 0.71 CSW01_09240 Holliday junction branch migration DNA helicase RuvB low > 62
Shewanella loihica PV-4 0.54 Shew_2077 crossover junction endodeoxyribonuclease RuvC (RefSeq) 0.69 Shew_2075 ruvB Holliday junction DNA helicase B (RefSeq) 0.40 18
Marinobacter adhaerens HP15 0.53 HP15_2042 crossover junction endodeoxyribonuclease RuvC 0.76 HP15_2040 Holliday junction ATP-dependent DNA helicase RuvB — —
Shewanella sp. ANA-3 0.52 Shewana3_1955 ruvC Holliday junction resolvase (RefSeq) 0.71 Shewana3_1957 ruvB Holliday junction DNA helicase RuvB (RefSeq) — —
Shewanella oneidensis MR-1 0.52 SO2431 ruvC crossover junction endodeoxyribonuclease RuvC (NCBI ptt file) 0.71 SO2429 ruvB Holliday junction DNA helicase RuvB (NCBI ptt file) 0.40 4
Shewanella amazonensis SB2B 0.52 Sama_1841 ruvC Holliday junction resolvase (RefSeq) 0.69 Sama_1839 ruvB Holliday junction DNA helicase RuvB (RefSeq) — —
Alteromonas macleodii MIT1002 0.51 MIT1002_01331 Crossover junction endodeoxyribonuclease RuvC 0.72 MIT1002_01333 Holliday junction ATP-dependent DNA helicase RuvB — —
Dickeya dianthicola 67-19 0.50 HGI48_RS10100 crossover junction endodeoxyribonuclease RuvC 0.73 HGI48_RS10115 Holliday junction branch migration DNA helicase RuvB — —
Dickeya dianthicola ME23 0.50 DZA65_RS10515 crossover junction endodeoxyribonuclease RuvC 0.73 DZA65_RS10530 Holliday junction branch migration DNA helicase RuvB — —
Dickeya dadantii 3937 0.50 DDA3937_RS10070 crossover junction endodeoxyribonuclease RuvC 0.73 DDA3937_RS10085 Holliday junction branch migration DNA helicase RuvB — —
Serratia liquefaciens MT49 0.50 IAI46_14630 crossover junction endodeoxyribonuclease RuvC 0.74 IAI46_14620 Holliday junction branch migration DNA helicase RuvB — —
Pantoea sp. MT58 0.49 IAI47_08440 crossover junction endodeoxyribonuclease RuvC 0.74 IAI47_08450 Holliday junction branch migration DNA helicase RuvB 0.49 1
Enterobacter sp. TBS_079 0.49 MPMX20_02768 Crossover junction endodeoxyribonuclease RuvC 0.72 MPMX20_02766 Holliday junction ATP-dependent DNA helicase RuvB 0.37 10
Pectobacterium carotovorum WPP14 0.49 HER17_RS11850 crossover junction endodeoxyribonuclease RuvC 0.73 HER17_RS11840 Holliday junction branch migration DNA helicase RuvB 0.66 5
Acinetobacter radioresistens SK82 0.48 MPMX26_01780 Crossover junction endodeoxyribonuclease RuvC 0.69 MPMX26_02186 Holliday junction ATP-dependent DNA helicase RuvB — —
Erwinia tracheiphila SCR3 0.48 LU632_RS13420 ruvC crossover junction endodeoxyribonuclease RuvC 0.72 LU632_RS13410 ruvB Holliday junction branch migration DNA helicase RuvB — —
Rahnella sp. WP5 0.48 EX31_RS11680 crossover junction endodeoxyribonuclease RuvC 0.73 EX31_RS11670 Holliday junction branch migration DNA helicase RuvB — —
Enterobacter asburiae PDN3 0.48 EX28DRAFT_0694 Holliday junction endonuclease RuvC (EC 3.1.22.4) 0.71 EX28DRAFT_0696 Holliday junction DNA helicase subunit RuvB — —
Escherichia coli ECRC102 0.48 NIAGMN_01795 ruvC crossover junction endodeoxyribonuclease RuvC 0.72 NIAGMN_01775 ruvB Holliday junction branch migration DNA helicase RuvB — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.48 OHPLBJKB_01865 Crossover junction endodeoxyribonuclease RuvC 0.72 OHPLBJKB_01868 Holliday junction ATP-dependent DNA helicase RuvB — —
Escherichia coli BL21 0.48 ECD_01834 component of RuvABC resolvasome, endonuclease 0.72 ECD_01831 ATP-dependent DNA helicase, component of RuvABC resolvasome — —
Escherichia coli ECRC101 0.48 OKFHMN_26265 ruvC crossover junction endodeoxyribonuclease RuvC 0.72 OKFHMN_26285 ruvB Holliday junction branch migration DNA helicase RuvB — —
Escherichia coli BW25113 0.48 b1863 ruvC Holliday junction resolvase (NCBI) 0.72 b1860 ruvB Holliday junction DNA helicase B (NCBI) 0.54 6
Escherichia coli ECRC98 0.48 JDDGAC_00840 ruvC crossover junction endodeoxyribonuclease RuvC 0.72 JDDGAC_00860 ruvB Holliday junction branch migration DNA helicase RuvB — —
Escherichia coli ECRC62 0.48 BNILDI_15500 ruvC crossover junction endodeoxyribonuclease RuvC 0.72 BNILDI_15520 ruvB Holliday junction branch migration DNA helicase RuvB — —
Klebsiella michiganensis M5al 0.48 BWI76_RS18155 crossover junction endodeoxyribonuclease RuvC 0.72 BWI76_RS18145 Holliday junction branch migration DNA helicase RuvB — —
Escherichia coli Nissle 1917 0.48 ECOLIN_RS10375 crossover junction endodeoxyribonuclease RuvC 0.72 ECOLIN_RS10360 Holliday junction branch migration DNA helicase RuvB — —
Escherichia fergusonii Becca 0.48 EFB2_02079 Crossover junction endodeoxyribonuclease RuvC 0.72 EFB2_02082 Holliday junction ATP-dependent DNA helicase RuvB — —
Escherichia coli ECOR38 0.48 HEPCGN_04675 ruvC crossover junction endodeoxyribonuclease RuvC 0.72 HEPCGN_04695 ruvB Holliday junction branch migration DNA helicase RuvB — —
Escherichia coli ECRC101 0.48 MCAODC_19140 ruvC crossover junction endodeoxyribonuclease RuvC 0.72 MCAODC_19120 ruvB Holliday junction branch migration DNA helicase RuvB — —
Escherichia coli ECRC99 0.48 KEDOAH_01840 ruvC crossover junction endodeoxyribonuclease RuvC 0.72 KEDOAH_01820 ruvB Holliday junction branch migration DNA helicase RuvB — —
Escherichia coli ECOR27 0.48 NOLOHH_16710 ruvC crossover junction endodeoxyribonuclease RuvC 0.72 NOLOHH_16730 ruvB Holliday junction branch migration DNA helicase RuvB — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.48 GFF1644 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.71 GFF1639 Holliday junction DNA helicase RuvB — —
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_04253 Holliday junction endonuclease RuvC 0.68 H281DRAFT_04255 Holliday junction DNA helicase subunit RuvB — —
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS16605 crossover junction endodeoxyribonuclease RuvC 0.68 BPHYT_RS16620 holliday junction ATP-dependent DNA helicase RuvB — —
Paraburkholderia graminis OAS925 0.45 ABIE53_003493 crossover junction endodeoxyribonuclease RuvC 0.68 ABIE53_003495 Holliday junction DNA helicase RuvB — —
Kangiella aquimarina DSM 16071 0.44 B158DRAFT_1124 Holliday junction endonuclease RuvC (EC 3.1.22.4) 0.71 B158DRAFT_1136 Holliday junction DNA helicase subunit RuvB 0.88 2
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS26785 crossover junction endodeoxyribonuclease RuvC 0.69 QEN71_RS26800 Holliday junction branch migration DNA helicase RuvB — —
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS02715 Holliday junction DNA helicase 0.69 RR42_RS02700 ATP-dependent DNA helicase RuvB — —
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS07635 crossover junction endodeoxyribonuclease RuvC 0.69 ABZR87_RS07620 Holliday junction branch migration DNA helicase RuvB 0.59 14
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS11680 crossover junction endodeoxyribonuclease RuvC 0.68 RALBFv3_RS11665 Holliday junction branch migration DNA helicase RuvB — —
Ralstonia solanacearum UW163 0.41 UW163_RS01905 crossover junction endodeoxyribonuclease RuvC 0.68 UW163_RS01920 Holliday junction branch migration DNA helicase RuvB — —
Herbaspirillum seropedicae SmR1 0.41 HSERO_RS02080 Holliday junction resolvase 0.68 HSERO_RS02095 Holliday junction DNA helicase RuvB — —
Ralstonia solanacearum GMI1000 0.41 RS_RS02500 crossover junction endodeoxyribonuclease RuvC 0.69 RS_RS02485 Holliday junction branch migration DNA helicase RuvB — —
Dechlorosoma suillum PS 0.41 Dsui_0486 crossover junction endodeoxyribonuclease RuvC 0.70 Dsui_0484 Holliday junction DNA helicase, RuvB subunit — —
Ralstonia solanacearum PSI07 0.40 RPSI07_RS21535 crossover junction endodeoxyribonuclease RuvC 0.69 RPSI07_RS21555 Holliday junction branch migration DNA helicase RuvB — —
Acidovorax sp. GW101-3H11 0.39 Ac3H11_4050 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.67 Ac3H11_4685 Holliday junction DNA helicase RuvB — —
Variovorax sp. OAS795 0.38 ABID97_RS06275 crossover junction endodeoxyribonuclease RuvC 0.67 ABID97_RS24875 Holliday junction branch migration DNA helicase RuvB — —
Variovorax sp. SCN45 0.38 GFF4462 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.67 GFF2090 Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) 0.38 9
Dyella japonica UNC79MFTsu3.2 0.37 ABZR86_RS10845 crossover junction endodeoxyribonuclease RuvC 0.68 ABZR86_RS10830 Holliday junction branch migration DNA helicase RuvB — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF572 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.68 GFF1665 Holliday junction DNA helicase RuvB — —
Rhodanobacter sp. FW510-T8 0.37 OKGIIK_01835 ruvC crossover junction endodeoxyribonuclease RuvC 0.68 OKGIIK_01850 ruvB Holliday junction branch migration DNA helicase RuvB — —
Rhodanobacter denitrificans MT42 0.35 LRK55_RS04695 crossover junction endodeoxyribonuclease RuvC 0.67 LRK55_RS04680 Holliday junction branch migration DNA helicase RuvB — —
Rhodanobacter denitrificans FW104-10B01 0.35 LRK54_RS04915 crossover junction endodeoxyribonuclease RuvC 0.67 LRK54_RS04900 Holliday junction branch migration DNA helicase RuvB — —
Bosea sp. OAE506 0.34 ABIE41_RS09470 crossover junction endodeoxyribonuclease RuvC 0.59 ABIE41_RS09480 Holliday junction branch migration DNA helicase RuvB — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.34 CA264_03880 crossover junction endodeoxyribonuclease RuvC 0.57 CA264_19800 Holliday junction branch migration DNA helicase RuvB — —
Castellaniella sp019104865 MT123 0.34 ABCV34_RS07975 crossover junction endodeoxyribonuclease RuvC 0.67 ABCV34_RS07990 Holliday junction branch migration DNA helicase RuvB — —
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.1435.1 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.67 Xcc-8004.1439.1 Holliday junction DNA helicase RuvB — —
Desulfovibrio vulgaris Hildenborough JW710 0.34 DVU2258 ruvC crossover junction endodeoxyribonuclease RuvC (TIGR) 0.56 DVU2255 ruvB Holliday junction DNA helicase RuvB (TIGR) 0.42 21
Rhodospirillum rubrum S1H 0.33 Rru_A1087 Crossover junction endodeoxyribonuclease RuvC (NCBI) 0.61 Rru_A1089 Holliday junction DNA helicase RuvB (NCBI) — —
Magnetospirillum magneticum AMB-1 0.32 AMB_RS16260 crossover junction endodeoxyribonuclease RuvC 0.59 AMB_RS16245 Holliday junction branch migration DNA helicase RuvB — —
Dinoroseobacter shibae DFL-12 0.32 Dshi_1103 crossover junction endodeoxyribonuclease RuvC (RefSeq) 0.57 Dshi_1105 Holliday junction DNA helicase RuvB (RefSeq) — —
Caulobacter crescentus NA1000 Δfur 0.32 CCNA_03346 crossover junction endodeoxyribonuclease ruvC 0.57 CCNA_03344 Holliday junction DNA helicase RuvB — —
Caulobacter crescentus NA1000 0.32 CCNA_03346 crossover junction endodeoxyribonuclease ruvC 0.57 CCNA_03344 Holliday junction DNA helicase RuvB low > 66
Parabacteroides merdae CL09T00C40 0.31 HMPREF1078_RS13315 crossover junction endodeoxyribonuclease RuvC 0.55 HMPREF1078_RS06175 Holliday junction branch migration DNA helicase RuvB low > 61
Agrobacterium fabrum C58 0.30 Atu3724 Holliday junction resolvase 0.57 Atu3722 Holliday junction DNA helicase RuvB — —
Rhizobium sp. OAE497 0.30 ABIE40_RS15730 crossover junction endodeoxyribonuclease RuvC 0.57 ABIE40_RS15760 Holliday junction branch migration DNA helicase RuvB 0.35 16
Sinorhizobium meliloti 1021 0.30 SMc03967 Holliday junction resolvase 0.59 SMc03965 Holliday junction DNA helicase RuvB — —
Fusobacterium nucleatum SB010 0.30 HUW76_02575 crossover junction endodeoxyribonuclease RuvC 0.56 HUW76_04170 Holliday junction branch migration DNA helicase RuvB — —
Lysobacter sp. OAE881 0.29 ABIE51_RS05040 crossover junction endodeoxyribonuclease RuvC 0.69 ABIE51_RS05055 Holliday junction branch migration DNA helicase RuvB — —
Phocaeicola vulgatus CL09T03C04 0.29 HMPREF1058_RS01800 crossover junction endodeoxyribonuclease RuvC 0.55 HMPREF1058_RS11890 Holliday junction branch migration DNA helicase RuvB 0.70 2
Phocaeicola dorei CL03T12C01 0.29 ABI39_RS15265 crossover junction endodeoxyribonuclease RuvC 0.55 ABI39_RS04970 Holliday junction branch migration DNA helicase RuvB 0.29 24
Bacteroides ovatus ATCC 8483 0.29 BACOVA_04396 crossover junction endodeoxyribonuclease RuvC 0.56 BACOVA_00895 Holliday junction DNA helicase RuvB — —
Bacteroides stercoris CC31F 0.29 HMPREF1181_RS05370 crossover junction endodeoxyribonuclease RuvC 0.55 HMPREF1181_RS02130 Holliday junction branch migration DNA helicase RuvB low > 56
Brevundimonas sp. GW460-12-10-14-LB2 0.28 A4249_RS15855 crossover junction endodeoxyribonuclease RuvC 0.57 A4249_RS15865 Holliday junction branch migration DNA helicase RuvB — —
Bacteroides thetaiotaomicron VPI-5482 0.28 BT_1664 ruvC Holliday junction resolvase (RefSeq) 0.56 BT3285 Holliday junction DNA helicase ruvB (NCBI ptt file) — —
Phaeobacter inhibens DSM 17395 0.28 PGA1_c05850 crossover junction endodeoxyribonuclease RuvC 0.57 PGA1_c05870 holliday junction ATP-dependent DNA helicase RuvB — —
Rhodopseudomonas palustris CGA009 0.26 TX73_005650 crossover junction endodeoxyribonuclease RuvC 0.59 TX73_005665 Holliday junction branch migration DNA helicase RuvB — —
Sphingomonas koreensis DSMZ 15582 0.24 Ga0059261_0822 Holliday junction endonuclease RuvC (EC 3.1.22.4) 0.57 Ga0059261_0819 Holliday junction DNA helicase subunit RuvB — —
Synechococcus elongatus PCC 7942 0.19 Synpcc7942_0798 ruvC Holliday junction resolvase 0.54 Synpcc7942_0835 ruvB Holliday junction DNA helicase B — —

Not shown: 0 genomes with orthologs for PP_1215 only; 8 genomes with orthologs for PP_1217 only