Conservation of cofitness between PP_1216 and PP_1215 in Pseudomonas putida KT2440

93 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1216 Holliday junction ATP-dependent DNA helicase RuvA 1.0 PP_1215 Crossover junction endodeoxyribonuclease RuvC 0.45 6
Pseudomonas syringae pv. syringae B728a ΔmexB 0.84 Psyr_1409 Holliday junction DNA helicase subunit RuvA 0.90 Psyr_1408 Holliday junction endonuclease RuvC low > 86
Pseudomonas syringae pv. syringae B728a 0.84 Psyr_1409 Holliday junction DNA helicase subunit RuvA 0.90 Psyr_1408 Holliday junction endonuclease RuvC — —
Pseudomonas sp. S08-1 0.82 OH686_19130 Holliday junction DNA helicase RuvA 0.85 OH686_19125 crossover junction endodeoxyribonuclease RuvC — —
Pseudomonas fluorescens FW300-N2E3 0.82 AO353_03585 ATP-dependent DNA helicase RuvA 0.88 AO353_03590 crossover junction endodeoxyribonuclease RuvC 0.31 6
Pseudomonas sp. RS175 0.82 PFR28_03413 Holliday junction ATP-dependent DNA helicase RuvA 0.87 PFR28_03414 Crossover junction endodeoxyribonuclease RuvC 0.49 2
Pseudomonas fluorescens GW456-L13 0.81 PfGW456L13_1852 Holliday junction DNA helicase RuvA 0.87 PfGW456L13_1851 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.56 2
Pseudomonas fluorescens FW300-N1B4 0.81 Pf1N1B4_638 Holliday junction DNA helicase RuvA 0.89 Pf1N1B4_639 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) — —
Pseudomonas fluorescens FW300-N2E2 0.81 Pf6N2E2_5536 Holliday junction DNA helicase RuvA 0.87 Pf6N2E2_5535 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) — —
Pseudomonas simiae WCS417 0.81 PS417_22450 ATP-dependent DNA helicase RuvA 0.86 PS417_22455 crossover junction endodeoxyribonuclease RuvC — —
Pseudomonas fluorescens SBW25-INTG 0.81 PFLU_RS24090 Holliday junction branch migration protein RuvA 0.86 PFLU_RS24095 crossover junction endodeoxyribonuclease RuvC 0.53 2
Pseudomonas fluorescens SBW25 0.81 PFLU_RS24090 Holliday junction branch migration protein RuvA 0.86 PFLU_RS24095 crossover junction endodeoxyribonuclease RuvC low > 109
Pseudomonas fluorescens FW300-N2C3 0.81 AO356_18020 ATP-dependent DNA helicase RuvA 0.87 AO356_18015 crossover junction endodeoxyribonuclease RuvC — —
Pseudomonas stutzeri RCH2 0.80 Psest_1496 Holliday junction DNA helicase, RuvA subunit 0.86 Psest_1495 crossover junction endodeoxyribonuclease RuvC — —
Vibrio cholerae E7946 ATCC 55056 0.57 CSW01_09245 Holliday junction branch migration protein RuvA 0.56 CSW01_09250 crossover junction endodeoxyribonuclease RuvC low > 62
Shewanella sp. ANA-3 0.56 Shewana3_1956 ruvA Holliday junction DNA helicase RuvA (RefSeq) 0.52 Shewana3_1955 ruvC Holliday junction resolvase (RefSeq) — —
Shewanella oneidensis MR-1 0.56 SO2430 ruvA Holliday junction DNA helicase RuvA (NCBI ptt file) 0.52 SO2431 ruvC crossover junction endodeoxyribonuclease RuvC (NCBI ptt file) 0.42 12
Alteromonas macleodii MIT1002 0.55 MIT1002_01332 Holliday junction ATP-dependent DNA helicase RuvA 0.51 MIT1002_01331 Crossover junction endodeoxyribonuclease RuvC — —
Rahnella sp. WP5 0.54 EX31_RS11675 Holliday junction branch migration protein RuvA 0.48 EX31_RS11680 crossover junction endodeoxyribonuclease RuvC — —
Shewanella loihica PV-4 0.53 Shew_2076 Holliday junction DNA helicase RuvA (RefSeq) 0.54 Shew_2077 crossover junction endodeoxyribonuclease RuvC (RefSeq) — —
Enterobacter asburiae PDN3 0.53 EX28DRAFT_0695 Holliday junction DNA helicase subunit RuvA 0.48 EX28DRAFT_0694 Holliday junction endonuclease RuvC (EC 3.1.22.4) — —
Escherichia coli BW25113 0.53 b1861 ruvA Holliday junction DNA helicase motor protein (NCBI) 0.48 b1863 ruvC Holliday junction resolvase (NCBI) 0.62 1
Escherichia fergusonii Becca 0.53 EFB2_02081 Holliday junction ATP-dependent DNA helicase RuvA 0.48 EFB2_02079 Crossover junction endodeoxyribonuclease RuvC — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.53 OHPLBJKB_01867 Holliday junction ATP-dependent DNA helicase RuvA 0.48 OHPLBJKB_01865 Crossover junction endodeoxyribonuclease RuvC — —
Escherichia coli BL21 0.53 ECD_01832 component of RuvABC resolvasome, regulatory subunit 0.48 ECD_01834 component of RuvABC resolvasome, endonuclease — —
Escherichia coli Nissle 1917 0.53 ECOLIN_RS10365 Holliday junction branch migration protein RuvA 0.48 ECOLIN_RS10375 crossover junction endodeoxyribonuclease RuvC — —
Enterobacter sp. TBS_079 0.52 MPMX20_02767 Holliday junction ATP-dependent DNA helicase RuvA 0.49 MPMX20_02768 Crossover junction endodeoxyribonuclease RuvC 0.32 25
Escherichia coli ECOR27 0.52 NOLOHH_16725 ruvA Holliday junction branch migration protein RuvA 0.48 NOLOHH_16710 ruvC crossover junction endodeoxyribonuclease RuvC — —
Escherichia coli ECRC62 0.52 BNILDI_15515 ruvA Holliday junction branch migration protein RuvA 0.48 BNILDI_15500 ruvC crossover junction endodeoxyribonuclease RuvC — —
Escherichia coli ECRC99 0.52 KEDOAH_01825 ruvA Holliday junction branch migration protein RuvA 0.48 KEDOAH_01840 ruvC crossover junction endodeoxyribonuclease RuvC — —
Escherichia coli ECOR38 0.52 HEPCGN_04690 ruvA Holliday junction branch migration protein RuvA 0.48 HEPCGN_04675 ruvC crossover junction endodeoxyribonuclease RuvC — —
Escherichia coli ECRC98 0.52 JDDGAC_00855 ruvA Holliday junction branch migration protein RuvA 0.48 JDDGAC_00840 ruvC crossover junction endodeoxyribonuclease RuvC — —
Shewanella amazonensis SB2B 0.52 Sama_1840 ruvA Holliday junction DNA helicase RuvA (RefSeq) 0.52 Sama_1841 ruvC Holliday junction resolvase (RefSeq) — —
Escherichia coli ECRC101 0.52 MCAODC_19125 ruvA Holliday junction branch migration protein RuvA 0.48 MCAODC_19140 ruvC crossover junction endodeoxyribonuclease RuvC — —
Escherichia coli ECRC102 0.52 NIAGMN_01780 ruvA Holliday junction branch migration protein RuvA 0.48 NIAGMN_01795 ruvC crossover junction endodeoxyribonuclease RuvC — —
Escherichia coli ECRC101 0.52 OKFHMN_26280 ruvA Holliday junction branch migration protein RuvA 0.48 OKFHMN_26265 ruvC crossover junction endodeoxyribonuclease RuvC — —
Klebsiella michiganensis M5al 0.52 BWI76_RS18150 Holliday junction branch migration protein RuvA 0.48 BWI76_RS18155 crossover junction endodeoxyribonuclease RuvC — —
Kangiella aquimarina DSM 16071 0.52 B158DRAFT_1125 Holliday junction DNA helicase subunit RuvA 0.44 B158DRAFT_1124 Holliday junction endonuclease RuvC (EC 3.1.22.4) 0.92 1
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.51 GFF1640 Holliday junction DNA helicase RuvA 0.48 GFF1644 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) — —
Pantoea sp. MT58 0.51 IAI47_08445 Holliday junction branch migration protein RuvA 0.49 IAI47_08440 crossover junction endodeoxyribonuclease RuvC 0.24 23
Marinobacter adhaerens HP15 0.51 HP15_2041 Holliday junction ATP-dependent DNA helicase RuvA 0.53 HP15_2042 crossover junction endodeoxyribonuclease RuvC — —
Erwinia tracheiphila SCR3 0.51 LU632_RS13415 ruvA Holliday junction branch migration protein RuvA 0.48 LU632_RS13420 ruvC crossover junction endodeoxyribonuclease RuvC — —
Dickeya dadantii 3937 0.50 DDA3937_RS10080 Holliday junction branch migration protein RuvA 0.50 DDA3937_RS10070 crossover junction endodeoxyribonuclease RuvC — —
Pectobacterium carotovorum WPP14 0.50 HER17_RS11845 Holliday junction branch migration protein RuvA 0.49 HER17_RS11850 crossover junction endodeoxyribonuclease RuvC — —
Dickeya dianthicola ME23 0.48 DZA65_RS10525 Holliday junction branch migration protein RuvA 0.50 DZA65_RS10515 crossover junction endodeoxyribonuclease RuvC — —
Serratia liquefaciens MT49 0.48 IAI46_14625 Holliday junction branch migration protein RuvA 0.50 IAI46_14630 crossover junction endodeoxyribonuclease RuvC — —
Dickeya dianthicola 67-19 0.48 HGI48_RS10110 Holliday junction branch migration protein RuvA 0.50 HGI48_RS10100 crossover junction endodeoxyribonuclease RuvC — —
Acinetobacter radioresistens SK82 0.45 MPMX26_02185 Holliday junction ATP-dependent DNA helicase RuvA 0.48 MPMX26_01780 Crossover junction endodeoxyribonuclease RuvC — —
Lysobacter sp. OAE881 0.45 ABIE51_RS05045 Holliday junction branch migration protein RuvA 0.29 ABIE51_RS05040 crossover junction endodeoxyribonuclease RuvC — —
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS16615 holliday junction ATP-dependent DNA helicase RuvA 0.45 BPHYT_RS16605 crossover junction endodeoxyribonuclease RuvC — —
Dechlorosoma suillum PS 0.45 Dsui_0485 Holliday junction DNA helicase, RuvA subunit 0.41 Dsui_0486 crossover junction endodeoxyribonuclease RuvC — —
Variovorax sp. SCN45 0.44 GFF2073 Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12) 0.38 GFF4462 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) low > 127
Castellaniella sp019104865 MT123 0.44 ABCV34_RS07980 Holliday junction branch migration protein RuvA 0.34 ABCV34_RS07975 crossover junction endodeoxyribonuclease RuvC — —
Rhodanobacter denitrificans MT42 0.44 LRK55_RS04690 Holliday junction branch migration protein RuvA 0.35 LRK55_RS04695 crossover junction endodeoxyribonuclease RuvC — —
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS04910 Holliday junction branch migration protein RuvA 0.35 LRK54_RS04915 crossover junction endodeoxyribonuclease RuvC — —
Variovorax sp. OAS795 0.44 ABID97_RS24920 Holliday junction branch migration protein RuvA 0.38 ABID97_RS06275 crossover junction endodeoxyribonuclease RuvC low > 91
Paraburkholderia sabiae LMG 24235 0.43 QEN71_RS26795 Holliday junction branch migration protein RuvA 0.44 QEN71_RS26785 crossover junction endodeoxyribonuclease RuvC — —
Dyella japonica UNC79MFTsu3.2 0.43 ABZR86_RS10840 Holliday junction branch migration protein RuvA 0.37 ABZR86_RS10845 crossover junction endodeoxyribonuclease RuvC — —
Paraburkholderia graminis OAS925 0.43 ABIE53_003494 Holliday junction DNA helicase RuvA 0.45 ABIE53_003493 crossover junction endodeoxyribonuclease RuvC — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF1666 Holliday junction DNA helicase RuvA 0.37 GFF572 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) — —
Ralstonia solanacearum GMI1000 0.42 RS_RS02490 Holliday junction branch migration protein RuvA 0.41 RS_RS02500 crossover junction endodeoxyribonuclease RuvC — —
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS11670 Holliday junction branch migration protein RuvA 0.41 RALBFv3_RS11680 crossover junction endodeoxyribonuclease RuvC — —
Ralstonia solanacearum PSI07 0.42 RPSI07_RS21550 Holliday junction branch migration protein RuvA 0.40 RPSI07_RS21535 crossover junction endodeoxyribonuclease RuvC — —
Ralstonia solanacearum UW163 0.42 UW163_RS01915 Holliday junction branch migration protein RuvA 0.41 UW163_RS01905 crossover junction endodeoxyribonuclease RuvC — —
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_01840 ruvA Holliday junction branch migration protein RuvA 0.37 OKGIIK_01835 ruvC crossover junction endodeoxyribonuclease RuvC — —
Paraburkholderia bryophila 376MFSha3.1 0.42 H281DRAFT_04254 Holliday junction DNA helicase subunit RuvA 0.45 H281DRAFT_04253 Holliday junction endonuclease RuvC — —
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS02705 Holliday junction DNA helicase RuvA 0.42 RR42_RS02715 Holliday junction DNA helicase — —
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.1436.1 Holliday junction DNA helicase RuvA 0.34 Xcc-8004.1435.1 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) — —
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS07625 Holliday junction branch migration protein RuvA 0.42 ABZR87_RS07635 crossover junction endodeoxyribonuclease RuvC 0.32 13
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS02090 Holliday junction DNA helicase RuvA 0.41 HSERO_RS02080 Holliday junction resolvase — —
Acidovorax sp. GW101-3H11 0.40 Ac3H11_4683 Holliday junction DNA helicase RuvA 0.39 Ac3H11_4050 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.37 CA264_14545 Holliday junction branch migration protein RuvA 0.34 CA264_03880 crossover junction endodeoxyribonuclease RuvC — —
Synechococcus elongatus PCC 7942 0.34 Synpcc7942_2298 ruvA Holliday junction DNA helicase motor protein 0.19 Synpcc7942_0798 ruvC Holliday junction resolvase — —
Parabacteroides merdae CL09T00C40 0.33 HMPREF1078_RS13015 Holliday junction branch migration protein RuvA 0.31 HMPREF1078_RS13315 crossover junction endodeoxyribonuclease RuvC low > 61
Sphingomonas koreensis DSMZ 15582 0.31 Ga0059261_0820 Holliday junction DNA helicase subunit RuvA 0.24 Ga0059261_0822 Holliday junction endonuclease RuvC (EC 3.1.22.4) — —
Bacteroides ovatus ATCC 8483 0.31 BACOVA_00691 Holliday junction DNA helicase RuvA 0.29 BACOVA_04396 crossover junction endodeoxyribonuclease RuvC — —
Bacteroides stercoris CC31F 0.30 HMPREF1181_RS07915 Holliday junction branch migration protein RuvA 0.29 HMPREF1181_RS05370 crossover junction endodeoxyribonuclease RuvC low > 56
Magnetospirillum magneticum AMB-1 0.30 AMB_RS16255 Holliday junction branch migration protein RuvA 0.32 AMB_RS16260 crossover junction endodeoxyribonuclease RuvC — —
Rhodopseudomonas palustris CGA009 0.30 TX73_005655 Holliday junction branch migration protein RuvA 0.26 TX73_005650 crossover junction endodeoxyribonuclease RuvC — —
Bacteroides thetaiotaomicron VPI-5482 0.29 BT1978 Holliday junction DNA helicase ruvA (NCBI ptt file) 0.28 BT_1664 ruvC Holliday junction resolvase (RefSeq) — —
Bosea sp. OAE506 0.29 ABIE41_RS09475 Holliday junction branch migration protein RuvA 0.34 ABIE41_RS09470 crossover junction endodeoxyribonuclease RuvC — —
Rhodospirillum rubrum S1H 0.28 Rru_A1088 DNA recombination protein RuvA (NCBI) 0.33 Rru_A1087 Crossover junction endodeoxyribonuclease RuvC (NCBI) — —
Agrobacterium fabrum C58 0.28 Atu3723 Holliday junction DNA helicase RuvA 0.30 Atu3724 Holliday junction resolvase — —
Phocaeicola dorei CL03T12C01 0.27 ABI39_RS08200 Holliday junction branch migration protein RuvA 0.29 ABI39_RS15265 crossover junction endodeoxyribonuclease RuvC — —
Rhizobium sp. OAE497 0.27 ABIE40_RS15745 Holliday junction branch migration protein RuvA 0.30 ABIE40_RS15730 crossover junction endodeoxyribonuclease RuvC 0.37 71
Brevundimonas sp. GW460-12-10-14-LB2 0.27 A4249_RS15860 Holliday junction branch migration protein RuvA 0.28 A4249_RS15855 crossover junction endodeoxyribonuclease RuvC — —
Dinoroseobacter shibae DFL-12 0.27 Dshi_1104 Holliday junction DNA helicase RuvA (RefSeq) 0.32 Dshi_1103 crossover junction endodeoxyribonuclease RuvC (RefSeq) — —
Phocaeicola vulgatus CL09T03C04 0.26 HMPREF1058_RS00595 Holliday junction branch migration protein RuvA 0.29 HMPREF1058_RS01800 crossover junction endodeoxyribonuclease RuvC 0.74 1
Desulfovibrio vulgaris Hildenborough JW710 0.26 DVU2256 ruvA Holliday junction DNA helicase RuvA (TIGR) 0.34 DVU2258 ruvC crossover junction endodeoxyribonuclease RuvC (TIGR) 0.49 7
Sinorhizobium meliloti 1021 0.26 SMc03966 Holliday junction DNA helicase RuvA 0.30 SMc03967 Holliday junction resolvase — —
Fusobacterium nucleatum SB010 0.24 HUW76_06655 Holliday junction branch migration protein RuvA 0.30 HUW76_02575 crossover junction endodeoxyribonuclease RuvC — —
Phaeobacter inhibens DSM 17395 0.24 PGA1_c05860 holliday junction ATP-dependent DNA helicase RuvA 0.28 PGA1_c05850 crossover junction endodeoxyribonuclease RuvC — —
Caulobacter crescentus NA1000 0.24 CCNA_03345 Holliday junction DNA helicase RuvA 0.32 CCNA_03346 crossover junction endodeoxyribonuclease ruvC low > 66
Caulobacter crescentus NA1000 Δfur 0.24 CCNA_03345 Holliday junction DNA helicase RuvA 0.32 CCNA_03346 crossover junction endodeoxyribonuclease ruvC — —

Not shown: 8 genomes with orthologs for PP_1216 only; 0 genomes with orthologs for PP_1215 only