Conservation of cofitness between PP_4722 and PP_0123 in Pseudomonas putida KT2440

93 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4722 Transcription elongation factor GreA 1.0 PP_0123 DNA polymerase I, 5 0.47 3
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_3363 Transcription elongation factor GreA 0.80 Pf6N2E2_4162 DNA polymerase I (EC 2.7.7.7) — —
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_07475 transcription elongation factor GreA 0.80 AO356_11465 DNA polymerase I — —
Pseudomonas sp. RS175 0.85 PFR28_00078 Transcription elongation factor GreA 0.79 PFR28_04624 DNA polymerase I — —
Pseudomonas syringae pv. syringae B728a 0.82 Psyr_4190 transcription elongation factor GreA 0.79 Psyr_0270 DNA polymerase I — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.82 Psyr_4190 transcription elongation factor GreA 0.79 Psyr_0270 DNA polymerase I — —
Pseudomonas sp. S08-1 0.81 OH686_17085 Transcription elongation factor GreA 0.77 OH686_12215 DNA polymerase I low > 80
Pseudomonas fluorescens FW300-N1B4 0.80 Pf1N1B4_1171 Transcription elongation factor GreA 0.79 Pf1N1B4_1875 DNA polymerase I (EC 2.7.7.7) — —
Pseudomonas fluorescens SBW25 0.80 PFLU_RS25875 transcription elongation factor GreA 0.77 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas fluorescens FW300-N2E3 0.80 AO353_05625 transcription elongation factor GreA 0.80 AO353_10930 DNA polymerase I low > 101
Pseudomonas fluorescens SBW25-INTG 0.80 PFLU_RS25875 transcription elongation factor GreA 0.77 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas fluorescens GW456-L13 0.79 PfGW456L13_5098 Transcription elongation factor GreA 0.76 PfGW456L13_594 DNA polymerase I (EC 2.7.7.7) — —
Pseudomonas simiae WCS417 0.79 PS417_24035 transcription elongation factor GreA 0.79 PS417_00405 DNA polymerase I — —
Pseudomonas stutzeri RCH2 0.77 Psest_0969 transcription elongation factor GreA 0.77 Psest_4219 DNA polymerase I low > 67
Shewanella loihica PV-4 0.61 Shew_2837 transcription elongation factor GreA (RefSeq) 0.60 Shew_3714 DNA polymerase I (RefSeq) low > 60
Shewanella sp. ANA-3 0.61 Shewana3_1017 transcription elongation factor GreA (RefSeq) 0.61 Shewana3_4109 DNA polymerase I (RefSeq) — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.61 GFF2922 Transcription elongation factor GreA 0.60 GFF2216 DNA polymerase I (EC 2.7.7.7) low > 78
Escherichia coli ECOR38 0.60 HEPCGN_16920 greA transcription elongation factor GreA 0.61 HEPCGN_12785 polA DNA polymerase I — —
Escherichia fergusonii Becca 0.60 EFB2_00642 Transcription elongation factor GreA 0.60 EFB2_04753 DNA polymerase I — —
Escherichia coli ECOR27 0.60 NOLOHH_09845 greA transcription elongation factor GreA 0.61 NOLOHH_06280 polA DNA polymerase I — —
Escherichia coli BL21 0.60 ECD_03046 transcript cleavage factor 0.61 ECD_03749 5 — —
Escherichia coli ECRC98 0.60 JDDGAC_21670 greA transcription elongation factor GreA 0.61 JDDGAC_17775 polA DNA polymerase I — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.60 OHPLBJKB_00519 Transcription elongation factor GreA 0.61 OHPLBJKB_04189 DNA polymerase I — —
Escherichia coli ECRC99 0.60 KEDOAH_10105 greA transcription elongation factor GreA 0.61 KEDOAH_14000 polA DNA polymerase I — —
Escherichia coli ECRC102 0.60 NIAGMN_15805 greA transcription elongation factor GreA 0.61 NIAGMN_11905 polA DNA polymerase I — —
Escherichia coli Nissle 1917 0.60 ECOLIN_RS18320 transcription elongation factor GreA 0.61 ECOLIN_RS22270 DNA polymerase I — —
Escherichia coli ECRC101 0.60 MCAODC_08565 greA transcription elongation factor GreA 0.61 MCAODC_04650 polA DNA polymerase I — —
Escherichia coli ECRC62 0.60 BNILDI_01690 greA transcription elongation factor GreA 0.61 BNILDI_05250 polA DNA polymerase I — —
Escherichia coli ECRC101 0.60 OKFHMN_18045 greA transcription elongation factor GreA 0.61 OKFHMN_14150 polA DNA polymerase I — —
Escherichia coli BW25113 0.60 b3181 greA transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) 0.61 b3863 polA DNA polymerase I (NCBI) low > 76
Shewanella oneidensis MR-1 0.60 SO1191 greA transcription elongation factor GreA (NCBI ptt file) 0.60 SO4669 polA DNA polymerase I (NCBI ptt file) — —
Alteromonas macleodii MIT1002 0.60 MIT1002_01468 Transcript cleavage factor GreA 0.62 MIT1002_00014 DNA polymerase I low > 70
Enterobacter sp. TBS_079 0.59 MPMX20_04085 Transcription elongation factor GreA 0.60 MPMX20_04601 DNA polymerase I low > 85
Marinobacter adhaerens HP15 0.59 HP15_3076 protein containing prokaryotic transcription elongation factor GreA domain 0.56 HP15_293 DNA polymerase I 0.30 47
Enterobacter asburiae PDN3 0.59 EX28DRAFT_3232 transcription elongation factor GreA 0.60 EX28DRAFT_4343 DNA polymerase I (EC 2.7.7.7) — —
Shewanella amazonensis SB2B 0.59 Sama_0951 GreA/GreB family elongation factor (RefSeq) 0.61 Sama_0093 DNA-directed DNA polymerase (RefSeq) low > 62
Klebsiella michiganensis M5al 0.59 BWI76_RS25160 transcription elongation factor GreA 0.59 BWI76_RS00355 DNA polymerase I low > 92
Pantoea sp. MT58 0.58 IAI47_17080 transcription elongation factor GreA 0.60 IAI47_00430 DNA polymerase I low > 76
Kangiella aquimarina DSM 16071 0.58 B158DRAFT_0617 transcription elongation factor GreA 0.57 B158DRAFT_0499 DNA polymerase I (EC 2.7.7.7) low > 40
Pectobacterium carotovorum WPP14 0.57 HER17_RS18330 transcription elongation factor GreA 0.61 HER17_RS21470 DNA polymerase I — —
Dickeya dadantii 3937 0.57 DDA3937_RS03015 transcription elongation factor GreA 0.59 DDA3937_RS00105 DNA polymerase I — —
Dickeya dianthicola 67-19 0.57 HGI48_RS03185 transcription elongation factor GreA 0.59 HGI48_RS21260 DNA polymerase I — —
Dickeya dianthicola ME23 0.57 DZA65_RS03180 transcription elongation factor GreA 0.59 DZA65_RS22235 DNA polymerase I — —
Acinetobacter radioresistens SK82 0.56 MPMX26_00765 Transcription elongation factor GreA 0.48 MPMX26_00574 DNA polymerase I low > 36
Serratia liquefaciens MT49 0.56 IAI46_01880 transcription elongation factor GreA 0.60 IAI46_24985 DNA polymerase I low > 86
Rahnella sp. WP5 0.56 EX31_RS08595 transcription elongation factor GreA 0.61 EX31_RS15905 DNA polymerase I low > 89
Erwinia tracheiphila SCR3 0.54 LU632_RS21165 greA transcription elongation factor GreA 0.61 LU632_RS23870 polA DNA polymerase I — —
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_03330 transcription elongation factor GreA 0.61 CSW01_00560 DNA polymerase I low > 62
Xanthomonas campestris pv. campestris strain 8004 0.52 Xcc-8004.2911.1 Transcription elongation factor GreA 0.52 Xcc-8004.5105.1 DNA polymerase I (EC 2.7.7.7) — —
Lysobacter sp. OAE881 0.51 ABIE51_RS11610 transcription elongation factor GreA 0.52 ABIE51_RS02010 DNA polymerase I low > 62
Dinoroseobacter shibae DFL-12 0.50 Dshi_3076 transcription elongation factor GreA (RefSeq) 0.40 Dshi_2909 DNA polymerase I (RefSeq) low > 64
Acidovorax sp. GW101-3H11 0.49 Ac3H11_437 Transcription elongation factor GreA 0.48 Ac3H11_1648 DNA polymerase I (EC 2.7.7.7) — —
Dechlorosoma suillum PS 0.49 Dsui_3063 transcription elongation factor GreA 0.52 Dsui_0459 DNA polymerase I low > 51
Brevundimonas sp. GW460-12-10-14-LB2 0.48 A4249_RS00695 transcription elongation factor GreA 0.39 A4249_RS13840 DNA polymerase I — —
Herbaspirillum seropedicae SmR1 0.48 HSERO_RS06930 transcription elongation factor GreA 0.53 HSERO_RS02260 DNA polymerase I — —
Ralstonia sp. UNC404CL21Col 0.48 ABZR87_RS14135 transcription elongation factor GreA 0.52 ABZR87_RS15680 DNA polymerase I low > 80
Cupriavidus basilensis FW507-4G11 0.47 RR42_RS13505 transcription elongation factor GreA 0.52 RR42_RS15050 DNA polymerase I — —
Ralstonia solanacearum PSI07 0.47 RPSI07_RS15260 transcription elongation factor GreA 0.51 RPSI07_RS13480 DNA polymerase I low > 81
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS04785 transcription elongation factor GreA 0.52 QEN71_RS17885 DNA polymerase I — —
Azospirillum sp. SherDot2 0.47 MPMX19_02300 Transcription elongation factor GreA 0.38 MPMX19_04869 DNA polymerase I low > 112
Hydrogenophaga sp. GW460-11-11-14-LB1 0.47 GFF4897 Transcription elongation factor GreA 0.45 GFF5584 DNA polymerase I (EC 2.7.7.7) low > 90
Phaeobacter inhibens DSM 17395 0.47 PGA1_c03290 transcription elongation factor GreA 0.39 PGA1_c31780 DNA polymerase I low > 62
Paraburkholderia graminis OAS925 0.46 ABIE53_003003 transcription elongation factor GreA 0.51 ABIE53_004852 DNA polymerase-1 low > 113
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS14185 transcription elongation factor GreA 0.51 BPHYT_RS33610 DNA polymerase I low > 109
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_04404 GreA/GreB family elongation factor 0.50 H281DRAFT_06022 DNA polymerase I low > 103
Ralstonia solanacearum UW163 0.46 UW163_RS15495 transcription elongation factor GreA 0.51 UW163_RS09920 DNA polymerase I — —
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS02185 transcription elongation factor GreA 0.51 RALBFv3_RS03750 DNA polymerase I low > 76
Azospirillum brasilense Sp245 0.46 AZOBR_RS12900 transcription elongation factor GreA 0.39 AZOBR_RS30685 DNA polymerase — —
Caulobacter crescentus NA1000 0.46 CCNA_02941 transcription elongation factor greA 0.40 CCNA_03577 DNA polymerase I low > 66
Caulobacter crescentus NA1000 Δfur 0.46 CCNA_02941 transcription elongation factor greA 0.40 CCNA_03577 DNA polymerase I low > 67
Ralstonia solanacearum GMI1000 0.46 RS_RS07635 transcription elongation factor GreA 0.51 RS_RS11195 DNA polymerase I — —
Variovorax sp. SCN45 0.45 GFF374 Transcription elongation factor GreA 0.49 GFF4006 DNA polymerase I (EC 2.7.7.7) low > 127
Castellaniella sp019104865 MT123 0.45 ABCV34_RS15540 transcription elongation factor GreA 0.47 ABCV34_RS02195 DNA polymerase I low > 48
Bosea sp. OAE506 0.45 ABIE41_RS11905 transcription elongation factor GreA 0.31 ABIE41_RS03570 DNA polymerase I — —
Magnetospirillum magneticum AMB-1 0.45 AMB_RS03610 transcription elongation factor GreA 0.39 AMB_RS21305 DNA polymerase I — —
Agrobacterium fabrum C58 0.45 Atu2182 transcription elongation facto 0.41 Atu0110 DNA polymerase I — —
Variovorax sp. OAS795 0.45 ABID97_RS17070 transcription elongation factor GreA 0.48 ABID97_RS09180 DNA polymerase I low > 91
Rhodopseudomonas palustris CGA009 0.42 TX73_021095 transcription elongation factor GreA 0.36 TX73_024545 DNA polymerase I — —
Desulfovibrio vulgaris Miyazaki F 0.42 DvMF_0383 greA transcription elongation factor GreA (RefSeq) 0.25 DvMF_1713 DNA polymerase I (RefSeq) — —
Rhodospirillum rubrum S1H 0.41 Rru_A2887 GreA/GreB family elongation factor (NCBI) 0.36 Rru_A3514 DNA polymerase A (NCBI) — —
Rhodanobacter sp. FW510-T8 0.40 OKGIIK_07290 greA transcription elongation factor GreA 0.56 OKGIIK_16785 polA DNA polymerase I low > 52
Sphingomonas koreensis DSMZ 15582 0.39 Ga0059261_0008 transcription elongation factor GreA 0.35 Ga0059261_2244 DNA polymerase I (EC 2.7.7.7) — —
Rhodanobacter denitrificans FW104-10B01 0.39 LRK54_RS18005 transcription elongation factor GreA 0.56 LRK54_RS06840 DNA polymerase I low > 59
Rhodanobacter denitrificans MT42 0.39 LRK55_RS17860 transcription elongation factor GreA 0.56 LRK55_RS06585 DNA polymerase I low > 63
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS05595 transcription elongation factor GreA 0.55 ABZR86_RS17015 DNA polymerase I low > 74
Parabacteroides merdae CL09T00C40 0.36 HMPREF1078_RS17725 transcription elongation factor GreA 0.36 HMPREF1078_RS06335 DNA polymerase I low > 61
Pedobacter sp. GW460-11-11-14-LB5 0.35 CA265_RS23190 transcription elongation factor GreA 0.36 CA265_RS19630 DNA polymerase I low > 88
Mucilaginibacter yixingensis YX-36 DSM 26809 0.35 ABZR88_RS00130 transcription elongation factor GreA 0.37 ABZR88_RS20185 DNA polymerase I low > 71
Bacteroides thetaiotaomicron VPI-5482 0.34 BT2565 transcription elongation factor greA (NCBI ptt file) 0.36 BT3260 DNA polymerase I (NCBI ptt file) — —
Phocaeicola vulgatus CL09T03C04 0.34 HMPREF1058_RS12565 transcription elongation factor GreA 0.35 HMPREF1058_RS11500 DNA polymerase I — —
Bacteroides ovatus ATCC 8483 0.34 BACOVA_01643 prokaryotic transcription elongation factor, GreA/GreB domain protein 0.37 BACOVA_01357 DNA-directed DNA polymerase low > 94
Bacteroides stercoris CC31F 0.33 HMPREF1181_RS00805 transcription elongation factor GreA 0.36 HMPREF1181_RS02070 DNA polymerase I — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.32 Echvi_0180 transcription elongation factor GreA 0.36 Echvi_1032 DNA polymerase I low > 79
Pontibacter actiniarum KMM 6156, DSM 19842 0.31 CA264_03870 transcription elongation factor GreA 0.35 CA264_16535 DNA polymerase I — —

Not shown: 3 genomes with orthologs for PP_4722 only; 4 genomes with orthologs for PP_0123 only