| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_4002 | | DNA-dependent ATPase required for recombination | 1.0 | PP_0123 | | DNA polymerase I, 5 | 0.35 | 1 |
| Pseudomonas fluorescens FW300-N2E3 | 0.93 | AO353_27640 | | recombination factor protein RarA | 0.80 | AO353_10930 | | DNA polymerase I | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.92 | Pf1N1B4_4062 | | FIG065221: Holliday junction DNA helicase | 0.79 | Pf1N1B4_1875 | | DNA polymerase I (EC 2.7.7.7) | — | — |
| Pseudomonas sp. RS175 | 0.92 | PFR28_02606 | | Replication-associated recombination protein A | 0.79 | PFR28_04624 | | DNA polymerase I | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.92 | AO356_22185 | | recombination factor protein RarA | 0.80 | AO356_11465 | | DNA polymerase I | 0.23 | 77 |
| Pseudomonas fluorescens FW300-N2E2 | 0.91 | Pf6N2E2_299 | | FIG065221: Holliday junction DNA helicase | 0.80 | Pf6N2E2_4162 | | DNA polymerase I (EC 2.7.7.7) | low | > 103 |
| Pseudomonas fluorescens GW456-L13 | 0.91 | PfGW456L13_2653 | | FIG065221: Holliday junction DNA helicase | 0.76 | PfGW456L13_594 | | DNA polymerase I (EC 2.7.7.7) | low | > 87 |
| Pseudomonas syringae pv. syringae B728a | 0.91 | Psyr_3177 | | Recombination protein MgsA | 0.79 | Psyr_0270 | | DNA polymerase I | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.91 | Psyr_3177 | | Recombination protein MgsA | 0.79 | Psyr_0270 | | DNA polymerase I | low | > 86 |
| Pseudomonas simiae WCS417 | 0.91 | PS417_16480 | | recombination factor protein RarA | 0.79 | PS417_00405 | | DNA polymerase I | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.91 | PFLU_RS18520 | | replication-associated recombination protein A | 0.77 | PFLU_RS00395 | | DNA polymerase I | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.91 | PFLU_RS18520 | | replication-associated recombination protein A | 0.77 | PFLU_RS00395 | | DNA polymerase I | low | > 109 |
| Pseudomonas sp. S08-1 | 0.88 | OH686_00270 | | Replication-associated recombination protein RarA | 0.77 | OH686_12215 | | DNA polymerase I | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.86 | Psest_2034 | | ATPase related to the helicase subunit of the Holliday junction resolvase | 0.77 | Psest_4219 | | DNA polymerase I | low | > 67 |
| Kangiella aquimarina DSM 16071 | 0.68 | B158DRAFT_1819 | | ATPase related to the helicase subunit of the Holliday junction resolvase | 0.57 | B158DRAFT_0499 | | DNA polymerase I (EC 2.7.7.7) | low | > 40 |
| Marinobacter adhaerens HP15 | 0.64 | HP15_1817 | | recombination factor protein RarA | 0.56 | HP15_293 | | DNA polymerase I | low | > 73 |
| Rahnella sp. WP5 | 0.60 | EX31_RS18515 | | replication-associated recombination protein A | 0.61 | EX31_RS15905 | | DNA polymerase I | low | > 89 |
| Klebsiella michiganensis M5al | 0.60 | BWI76_RS09670 | | recombination factor protein RarA | 0.59 | BWI76_RS00355 | | DNA polymerase I | low | > 92 |
| Enterobacter asburiae PDN3 | 0.60 | EX28DRAFT_2040 | | ATPase related to the helicase subunit of the Holliday junction resolvase | 0.60 | EX28DRAFT_4343 | | DNA polymerase I (EC 2.7.7.7) | — | — |
| Serratia liquefaciens MT49 | 0.59 | IAI46_08570 | | replication-associated recombination protein A | 0.60 | IAI46_24985 | | DNA polymerase I | low | > 86 |
| Shewanella sp. ANA-3 | 0.59 | Shewana3_2052 | | recombination factor protein RarA (RefSeq) | 0.61 | Shewana3_4109 | | DNA polymerase I (RefSeq) | — | — |
| Shewanella loihica PV-4 | 0.59 | Shew_2022 | | recombination factor protein RarA (RefSeq) | 0.60 | Shew_3714 | | DNA polymerase I (RefSeq) | low | > 60 |
| Enterobacter sp. TBS_079 | 0.59 | MPMX20_01554 | | Replication-associated recombination protein A | 0.60 | MPMX20_04601 | | DNA polymerase I | low | > 85 |
| Vibrio cholerae E7946 ATCC 55056 | 0.59 | CSW01_05630 | | replication-associated recombination protein A | 0.61 | CSW01_00560 | | DNA polymerase I | low | > 62 |
| Erwinia tracheiphila SCR3 | 0.59 | LU632_RS09755 | | replication-associated recombination protein A | 0.61 | LU632_RS23870 | polA | DNA polymerase I | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.59 | GFF4896 | | FIG065221: Holliday junction DNA helicase | 0.60 | GFF2216 | | DNA polymerase I (EC 2.7.7.7) | low | > 78 |
| Shewanella oneidensis MR-1 | 0.59 | SO2308 | | ATPase, AAA family (NCBI ptt file) | 0.60 | SO4669 | polA | DNA polymerase I (NCBI ptt file) | — | — |
| Escherichia coli ECRC101 | 0.59 | OKFHMN_05560 | rarA | replication-associated recombination protein RarA | 0.61 | OKFHMN_14150 | polA | DNA polymerase I | — | — |
| Escherichia fergusonii Becca | 0.59 | EFB2_03169 | | Replication-associated recombination protein A | 0.60 | EFB2_04753 | | DNA polymerase I | — | — |
| Escherichia coli ECRC98 | 0.59 | JDDGAC_09370 | rarA | replication-associated recombination protein RarA | 0.61 | JDDGAC_17775 | polA | DNA polymerase I | — | — |
| Escherichia coli Nissle 1917 | 0.59 | ECOLIN_RS04745 | | replication-associated recombination protein RarA | 0.61 | ECOLIN_RS22270 | | DNA polymerase I | — | — |
| Escherichia coli BW25113 | 0.59 | b0892 | ycaJ | recombination protein (NCBI) | 0.61 | b3863 | polA | DNA polymerase I (NCBI) | low | > 76 |
| Cupriavidus basilensis FW507-4G11 | 0.59 | RR42_RS04355 | | recombination factor protein RarA | 0.52 | RR42_RS15050 | | DNA polymerase I | low | > 128 |
| Escherichia coli ECRC99 | 0.59 | KEDOAH_22175 | rarA | replication-associated recombination protein RarA | 0.61 | KEDOAH_14000 | polA | DNA polymerase I | — | — |
| Escherichia coli ECRC101 | 0.59 | MCAODC_24950 | rarA | replication-associated recombination protein RarA | 0.61 | MCAODC_04650 | polA | DNA polymerase I | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.59 | OHPLBJKB_02776 | | Replication-associated recombination protein A | 0.61 | OHPLBJKB_04189 | | DNA polymerase I | — | — |
| Escherichia coli ECOR27 | 0.59 | NOLOHH_22130 | rarA | replication-associated recombination protein RarA | 0.61 | NOLOHH_06280 | polA | DNA polymerase I | — | — |
| Escherichia coli ECRC102 | 0.59 | NIAGMN_03280 | rarA | replication-associated recombination protein RarA | 0.61 | NIAGMN_11905 | polA | DNA polymerase I | — | — |
| Escherichia coli ECOR38 | 0.59 | HEPCGN_22950 | rarA | replication-associated recombination protein RarA | 0.61 | HEPCGN_12785 | polA | DNA polymerase I | — | — |
| Escherichia coli BL21 | 0.59 | ECD_00896 | | recombination intermediate processing DNA-dependent ATPase | 0.61 | ECD_03749 | | 5 | — | — |
| Pantoea sp. MT58 | 0.59 | IAI47_12900 | | replication-associated recombination protein A | 0.60 | IAI47_00430 | | DNA polymerase I | low | > 76 |
| Escherichia coli ECRC62 | 0.59 | BNILDI_20385 | rarA | replication-associated recombination protein RarA | 0.61 | BNILDI_05250 | polA | DNA polymerase I | — | — |
| Dickeya dadantii 3937 | 0.58 | DDA3937_RS09605 | | replication-associated recombination protein A | 0.59 | DDA3937_RS00105 | | DNA polymerase I | — | — |
| Dickeya dianthicola 67-19 | 0.58 | HGI48_RS09620 | | replication-associated recombination protein A | 0.59 | HGI48_RS21260 | | DNA polymerase I | — | — |
| Dickeya dianthicola ME23 | 0.58 | DZA65_RS09930 | | replication-associated recombination protein A | 0.59 | DZA65_RS22235 | | DNA polymerase I | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.58 | QEN71_RS03415 | | replication-associated recombination protein A | 0.52 | QEN71_RS17885 | | DNA polymerase I | — | — |
| Ralstonia sp. UNC404CL21Col | 0.58 | ABZR87_RS16030 | | replication-associated recombination protein A | 0.52 | ABZR87_RS15680 | | DNA polymerase I | low | > 80 |
| Pectobacterium carotovorum WPP14 | 0.58 | HER17_RS12345 | | replication-associated recombination protein A | 0.61 | HER17_RS21470 | | DNA polymerase I | — | — |
| Paraburkholderia graminis OAS925 | 0.58 | ABIE53_001292 | | putative ATPase | 0.51 | ABIE53_004852 | | DNA polymerase-1 | 0.26 | 21 |
| Shewanella amazonensis SB2B | 0.58 | Sama_1774 | | recombination factor protein RarA (RefSeq) | 0.61 | Sama_0093 | | DNA-directed DNA polymerase (RefSeq) | low | > 62 |
| Ralstonia solanacearum PSI07 | 0.58 | RPSI07_RS13205 | | replication-associated recombination protein A | 0.51 | RPSI07_RS13480 | | DNA polymerase I | low | > 81 |
| Burkholderia phytofirmans PsJN | 0.57 | BPHYT_RS05100 | | ATPase AAA | 0.51 | BPHYT_RS33610 | | DNA polymerase I | low | > 109 |
| Ralstonia solanacearum IBSBF1503 | 0.57 | RALBFv3_RS04145 | | replication-associated recombination protein A | 0.51 | RALBFv3_RS03750 | | DNA polymerase I | low | > 76 |
| Ralstonia solanacearum UW163 | 0.57 | UW163_RS09525 | | replication-associated recombination protein A | 0.51 | UW163_RS09920 | | DNA polymerase I | — | — |
| Dechlorosoma suillum PS | 0.56 | Dsui_1694 | | AAA ATPase | 0.52 | Dsui_0459 | | DNA polymerase I | low | > 51 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.56 | H281DRAFT_00180 | | Recombination protein MgsA | 0.50 | H281DRAFT_06022 | | DNA polymerase I | low | > 103 |
| Herbaspirillum seropedicae SmR1 | 0.56 | HSERO_RS09515 | | ATPase AAA | 0.53 | HSERO_RS02260 | | DNA polymerase I | low | > 78 |
| Ralstonia solanacearum GMI1000 | 0.56 | RS_RS11735 | | replication-associated recombination protein A | 0.51 | RS_RS11195 | | DNA polymerase I | low | > 80 |
| Castellaniella sp019104865 MT123 | 0.55 | ABCV34_RS07220 | | replication-associated recombination protein A | 0.47 | ABCV34_RS02195 | | DNA polymerase I | low | > 48 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.55 | Xcc-8004.2744.1 | | FIG065221: Holliday junction DNA helicase | 0.52 | Xcc-8004.5105.1 | | DNA polymerase I (EC 2.7.7.7) | — | — |
| Alteromonas macleodii MIT1002 | 0.54 | MIT1002_02178 | | Replication-associated recombination protein A | 0.62 | MIT1002_00014 | | DNA polymerase I | low | > 70 |
| Variovorax sp. SCN45 | 0.54 | GFF6034 | | Replication-associated recombination protein RarA | 0.49 | GFF4006 | | DNA polymerase I (EC 2.7.7.7) | low | > 127 |
| Variovorax sp. OAS795 | 0.54 | ABID97_RS07835 | | replication-associated recombination protein A | 0.48 | ABID97_RS09180 | | DNA polymerase I | low | > 91 |
| Acidovorax sp. GW101-3H11 | 0.53 | Ac3H11_1696 | | FIG065221: Holliday junction DNA helicase | 0.48 | Ac3H11_1648 | | DNA polymerase I (EC 2.7.7.7) | — | — |
| Rhodanobacter sp. FW510-T8 | 0.53 | OKGIIK_07580 | rarA | recombination factor protein RarA | 0.56 | OKGIIK_16785 | polA | DNA polymerase I | low | > 52 |
| Rhodanobacter denitrificans FW104-10B01 | 0.53 | LRK54_RS17320 | | replication-associated recombination protein A | 0.56 | LRK54_RS06840 | | DNA polymerase I | low | > 59 |
| Dyella japonica UNC79MFTsu3.2 | 0.53 | ABZR86_RS01825 | | replication-associated recombination protein A | 0.55 | ABZR86_RS17015 | | DNA polymerase I | low | > 74 |
| Rhodanobacter denitrificans MT42 | 0.53 | LRK55_RS17545 | | replication-associated recombination protein A | 0.56 | LRK55_RS06585 | | DNA polymerase I | low | > 63 |
| Lysobacter sp. OAE881 | 0.52 | ABIE51_RS11445 | | replication-associated recombination protein A | 0.52 | ABIE51_RS02010 | | DNA polymerase I | low | > 62 |
| Azospirillum brasilense Sp245 | 0.48 | AZOBR_RS06885 | | ATPase AAA | 0.39 | AZOBR_RS30685 | | DNA polymerase | low | > 97 |
| Phaeobacter inhibens DSM 17395 | 0.48 | PGA1_c01930 | | replication-associated recombination protein A | 0.39 | PGA1_c31780 | | DNA polymerase I | low | > 62 |
| Agrobacterium fabrum C58 | 0.47 | Atu1914 | | ATPase, AAA family protein | 0.41 | Atu0110 | | DNA polymerase I | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.47 | A4249_RS07890 | | replication-associated recombination protein A | 0.39 | A4249_RS13840 | | DNA polymerase I | — | — |
| Azospirillum sp. SherDot2 | 0.47 | MPMX19_01528 | | Replication-associated recombination protein A | 0.38 | MPMX19_04869 | | DNA polymerase I | low | > 112 |
| Rhizobium sp. OAE497 | 0.47 | ABIE40_RS08045 | | replication-associated recombination protein A | 0.31 | ABIE40_RS00490 | | DNA polymerase I | low | > 107 |
| Magnetospirillum magneticum AMB-1 | 0.46 | AMB_RS17620 | | replication-associated recombination protein A | 0.39 | AMB_RS21305 | | DNA polymerase I | — | — |
| Rhodopseudomonas palustris CGA009 | 0.46 | TX73_016655 | | replication-associated recombination protein A | 0.36 | TX73_024545 | | DNA polymerase I | low | > 86 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.46 | GFF777 | | FIG065221: Holliday junction DNA helicase | 0.45 | GFF5584 | | DNA polymerase I (EC 2.7.7.7) | low | > 90 |
| Dinoroseobacter shibae DFL-12 | 0.45 | Dshi_0313 | | AAA ATPase central domain protein (RefSeq) | 0.40 | Dshi_2909 | | DNA polymerase I (RefSeq) | low | > 64 |
| Rhodospirillum rubrum S1H | 0.45 | Rru_A2660 | | AAA ATPase, central region (NCBI) | 0.36 | Rru_A3514 | | DNA polymerase A (NCBI) | — | — |
| Caulobacter crescentus NA1000 | 0.45 | CCNA_01342 | | ATPase, AAA family | 0.40 | CCNA_03577 | | DNA polymerase I | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.45 | CCNA_01342 | | ATPase, AAA family | 0.40 | CCNA_03577 | | DNA polymerase I | low | > 67 |
| Bosea sp. OAE506 | 0.44 | ABIE41_RS14690 | | replication-associated recombination protein A | 0.31 | ABIE41_RS03570 | | DNA polymerase I | 0.44 | 11 |
| Bacteroides ovatus ATCC 8483 | 0.43 | BACOVA_03971 | | ATPase, AAA family | 0.37 | BACOVA_01357 | | DNA-directed DNA polymerase | low | > 94 |
| Bacteroides stercoris CC31F | 0.42 | HMPREF1181_RS16975 | | replication-associated recombination protein A | 0.36 | HMPREF1181_RS02070 | | DNA polymerase I | low | > 56 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.42 | CA265_RS22400 | | AAA family ATPase | 0.36 | CA265_RS19630 | | DNA polymerase I | low | > 88 |
| Parabacteroides merdae CL09T00C40 | 0.42 | HMPREF1078_RS15395 | | replication-associated recombination protein A | 0.36 | HMPREF1078_RS06335 | | DNA polymerase I | low | > 61 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.42 | BT1205 | | putative ATPase, AAA family (NCBI ptt file) | 0.36 | BT3260 | | DNA polymerase I (NCBI ptt file) | low | > 81 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.41 | ABZR88_RS20285 | | replication-associated recombination protein A | 0.37 | ABZR88_RS20185 | | DNA polymerase I | low | > 71 |
| Phocaeicola vulgatus CL09T03C04 | 0.41 | HMPREF1058_RS06440 | | replication-associated recombination protein A | 0.35 | HMPREF1058_RS11500 | | DNA polymerase I | low | > 67 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.41 | CA264_02215 | | AAA family ATPase | 0.35 | CA264_16535 | | DNA polymerase I | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.41 | Echvi_4603 | | ATPase related to the helicase subunit of the Holliday junction resolvase | 0.36 | Echvi_1032 | | DNA polymerase I | 0.26 | 36 |
| Acinetobacter radioresistens SK82 | 0.40 | MPMX26_02987 | | Replication-associated recombination protein A | 0.48 | MPMX26_00574 | | DNA polymerase I | low | > 36 |
| Mycobacterium tuberculosis H37Rv | 0.35 | Rv2559c | | Conserved hypothetical alanine leucine valine rich protein | 0.26 | Rv1629 | | Probable DNA polymerase I PolA | — | — |
| Fusobacterium nucleatum SB010 | 0.33 | HUW76_02735 | | replication-associated recombination protein A | 0.26 | HUW76_04385 | | DNA polymerase I | low | > 35 |
| Desulfovibrio vulgaris Miyazaki F | 0.32 | DvMF_0339 | | recombination factor protein RarA (RefSeq) | 0.25 | DvMF_1713 | | DNA polymerase I (RefSeq) | — | — |
Not shown: 4 genomes with orthologs for PP_4002 only; 2 genomes with orthologs for PP_0123 only