Conservation of cofitness between IAI47_11310 and IAI47_03375 in Pantoea sp. MT58

92 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pantoea sp. MT58 1.0 IAI47_11310 redox-regulated ATPase YchF 1.0 IAI47_03375 peptide chain release factor 3 0.47 4
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF2784 GTP-binding and nucleic acid-binding protein YchF 0.93 GFF1035 Peptide chain release factor 3 low > 78
Dickeya dianthicola ME23 0.94 DZA65_RS11435 redox-regulated ATPase YchF 0.91 DZA65_RS02505 peptide chain release factor 3 low > 75
Dickeya dianthicola 67-19 0.94 HGI48_RS10975 redox-regulated ATPase YchF 0.91 HGI48_RS02400 peptide chain release factor 3 — —
Dickeya dadantii 3937 0.94 DDA3937_RS11035 redox-regulated ATPase YchF 0.91 DDA3937_RS02445 peptide chain release factor 3 low > 74
Erwinia tracheiphila SCR3 0.94 LU632_RS13950 ychF redox-regulated ATPase YchF 0.93 LU632_RS02475 prfC peptide chain release factor 3 low > 74
Escherichia coli HS(pFamp)R (ATCC 700891) 0.93 OHPLBJKB_02484 Ribosome-binding ATPase YchF 0.91 OHPLBJKB_03687 Peptide chain release factor RF3 low > 73
Escherichia coli ECRC102 0.93 NIAGMN_27825 ychF redox-regulated ATPase YchF 0.91 NIAGMN_09130 prfC peptide chain release factor 3 — —
Escherichia coli ECRC101 0.93 OKFHMN_28410 ychF redox-regulated ATPase YchF 0.91 OKFHMN_11280 prfC peptide chain release factor 3 — —
Escherichia coli ECRC101 0.93 MCAODC_21850 ychF redox-regulated ATPase YchF 0.91 MCAODC_01795 prfC peptide chain release factor 3 — —
Escherichia coli BW25113 0.93 b1203 ychF translation-associated GTPase (NCBI) 0.91 b4375 prfC peptide chain release factor 3 (NCBI) — —
Escherichia coli ECOR27 0.93 NOLOHH_20650 ychF redox-regulated ATPase YchF 0.91 NOLOHH_03600 prfC peptide chain release factor 3 — —
Escherichia coli ECRC99 0.93 KEDOAH_25405 ychF redox-regulated ATPase YchF 0.91 KEDOAH_16865 prfC peptide chain release factor 3 — —
Escherichia coli ECOR38 0.93 HEPCGN_24875 ychF redox-regulated ATPase YchF 0.91 HEPCGN_09285 prfC peptide chain release factor 3 — —
Escherichia coli ECRC98 0.93 JDDGAC_06165 ychF redox-regulated ATPase YchF 0.91 JDDGAC_14875 prfC peptide chain release factor 3 — —
Escherichia coli Nissle 1917 0.93 ECOLIN_RS07280 redox-regulated ATPase YchF 0.91 ECOLIN_RS25110 peptide chain release factor 3 — —
Escherichia fergusonii Becca 0.93 EFB2_02724 Ribosome-binding ATPase YchF 0.91 EFB2_04072 Peptide chain release factor RF3 low > 86
Escherichia coli ECRC62 0.93 BNILDI_18805 ychF redox-regulated ATPase YchF 0.91 BNILDI_08000 prfC peptide chain release factor 3 — —
Escherichia coli BL21 0.93 ECD_01178 catalase inhibitor protein; ATPase, K+-dependent, ribosome-associated 0.91 ECD_04250 peptide chain release factor RF-3 — —
Pectobacterium carotovorum WPP14 0.93 HER17_RS10445 redox-regulated ATPase YchF 0.92 HER17_RS19065 peptide chain release factor 3 low > 75
Serratia liquefaciens MT49 0.91 IAI46_10240 redox-regulated ATPase YchF 0.93 IAI46_02875 peptide chain release factor 3 — —
Rahnella sp. WP5 0.90 EX31_RS07380 redox-regulated ATPase YchF 0.92 EX31_RS04095 peptide chain release factor 3 — —
Enterobacter asburiae PDN3 0.89 EX28DRAFT_0821 GTP-binding protein YchF 0.94 EX28DRAFT_3583 peptide chain release factor 3 — —
Enterobacter sp. TBS_079 0.89 MPMX20_02645 Ribosome-binding ATPase YchF 0.94 MPMX20_00673 Peptide chain release factor RF3 low > 85
Klebsiella michiganensis M5al 0.89 BWI76_RS17485 GTP-binding protein YchF 0.93 BWI76_RS04100 peptide chain release factor 3 — —
Shewanella amazonensis SB2B 0.81 Sama_2571 GTP-dependent nucleic acid-binding protein EngD (RefSeq) 0.86 Sama_0968 prfC peptide chain release factor 3 (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.81 MIT1002_01504 Ribosome-binding ATPase YchF 0.84 MIT1002_01192 Peptide chain release factor 3 low > 70
Shewanella sp. ANA-3 0.80 Shewana3_1012 GTP-dependent nucleic acid-binding protein EngD (RefSeq) 0.80 Shewana3_1037 prfC peptide chain release factor 3 (RefSeq) low > 73
Shewanella loihica PV-4 0.78 Shew_2919 translation-associated GTPase (RefSeq) 0.80 Shew_2820 prfC peptide chain release factor 3 (RefSeq) 0.51 26
Marinobacter adhaerens HP15 0.75 HP15_704 translation-associated GTPase 0.81 HP15_541 peptide chain release factor 3 0.45 4
Vibrio cholerae E7946 ATCC 55056 0.74 CSW01_10875 redox-regulated ATPase YchF 0.85 CSW01_03470 peptide chain release factor 3 low > 62
Cupriavidus basilensis FW507-4G11 0.73 RR42_RS18365 GTP-binding protein 0.62 RR42_RS37475 peptide chain release factor 3 low > 128
Pseudomonas sp. S08-1 0.73 OH686_07965 GTP-binding and nucleic acid-binding protein YchF 0.69 OH686_08765 peptide chain release factor 3 — —
Pseudomonas putida KT2440 0.73 PP_0719 ribosome-associated potassium-dependent informational ATP/GTPase 0.69 PP_0872 Peptide chain release factor 3 0.27 59
Kangiella aquimarina DSM 16071 0.73 B158DRAFT_2052 GTP-binding protein YchF 0.77 B158DRAFT_2239 peptide chain release factor 3 low > 40
Acinetobacter radioresistens SK82 0.72 MPMX26_01861 Ribosome-binding ATPase YchF 0.67 MPMX26_00476 Peptide chain release factor RF3 0.88 3
Pseudomonas stutzeri RCH2 0.72 Psest_1103 GTP-binding protein YchF 0.71 Psest_3351 peptide chain release factor 3 low > 67
Pseudomonas sp. RS175 0.72 PFR28_03664 Ribosome-binding ATPase YchF 0.70 PFR28_00118 Peptide chain release factor RF3 — —
Pseudomonas fluorescens FW300-N2E3 0.72 AO353_14740 GTP-binding protein 0.70 AO353_05420 peptide chain release factor 3 low > 101
Pseudomonas fluorescens GW456-L13 0.72 PfGW456L13_1574 GTP-binding and nucleic acid-binding protein YchF 0.70 PfGW456L13_5060 Peptide chain release factor 3 0.66 4
Pseudomonas fluorescens FW300-N2C3 0.71 AO356_16450 GTP-binding protein 0.70 AO356_07285 peptide chain release factor 3 — —
Paraburkholderia sabiae LMG 24235 0.71 QEN71_RS27600 redox-regulated ATPase YchF 0.51 QEN71_RS17200 peptide chain release factor 3 low > 153
Pseudomonas syringae pv. syringae B728a 0.71 Psyr_0941 Conserved hypothetical protein 92 0.69 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.71 Psyr_0941 Conserved hypothetical protein 92 0.69 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) — —
Dyella japonica UNC79MFTsu3.2 0.71 ABZR86_RS22010 redox-regulated ATPase YchF 0.68 ABZR86_RS19000 peptide chain release factor 3 — —
Pseudomonas simiae WCS417 0.71 PS417_03560 GTP-binding protein 0.70 PS417_04030 peptide chain release factor 3 — —
Ralstonia solanacearum GMI1000 0.71 RS_RS14520 redox-regulated ATPase YchF 0.61 RS_RS25080 peptide chain release factor 3 low > 80
Ralstonia sp. UNC404CL21Col 0.71 ABZR87_RS02220 redox-regulated ATPase YchF 0.62 ABZR87_RS23485 peptide chain release factor 3 low > 80
Paraburkholderia graminis OAS925 0.71 ABIE53_003650 GTP-binding protein YchF 0.52 ABIE53_004717 peptide chain release factor 3 low > 113
Paraburkholderia bryophila 376MFSha3.1 0.71 H281DRAFT_05705 hypothetical protein 0.52 H281DRAFT_03538 bacterial peptide chain release factor 3 (bRF-3) low > 103
Burkholderia phytofirmans PsJN 0.71 BPHYT_RS17445 GTP-binding protein YchF 0.52 BPHYT_RS34275 peptide chain release factor 3 low > 109
Lysobacter sp. OAE881 0.70 ABIE51_RS05745 redox-regulated ATPase YchF 0.67 ABIE51_RS16210 peptide chain release factor 3 — —
Castellaniella sp019104865 MT123 0.70 ABCV34_RS09215 redox-regulated ATPase YchF 0.53 ABCV34_RS12505 peptide chain release factor 3 — —
Pseudomonas fluorescens SBW25 0.70 PFLU_RS03610 redox-regulated ATPase YchF 0.70 PFLU_RS04070 peptide chain release factor 3 low > 109
Pseudomonas fluorescens SBW25-INTG 0.70 PFLU_RS03610 redox-regulated ATPase YchF 0.70 PFLU_RS04070 peptide chain release factor 3 low > 109
Ralstonia solanacearum UW163 0.70 UW163_RS07055 redox-regulated ATPase YchF 0.61 UW163_RS16595 peptide chain release factor 3 — —
Ralstonia solanacearum IBSBF1503 0.70 RALBFv3_RS06570 redox-regulated ATPase YchF 0.61 RALBFv3_RS23345 peptide chain release factor 3 low > 76
Ralstonia solanacearum PSI07 0.69 RPSI07_RS10660 redox-regulated ATPase YchF 0.61 RPSI07_RS07810 peptide chain release factor 3 low > 81
Dechlorosoma suillum PS 0.69 Dsui_1039 GTP-binding protein YchF 0.62 Dsui_2418 peptide chain release factor 3 — —
Xanthomonas campestris pv. campestris strain 8004 0.69 Xcc-8004.4168.1 GTP-binding and nucleic acid-binding protein YchF 0.65 Xcc-8004.1590.1 Peptide chain release factor 3 — —
Herbaspirillum seropedicae SmR1 0.69 HSERO_RS20405 GTP-binding protein YchF 0.63 HSERO_RS14640 peptide chain release factor 3 0.32 20
Variovorax sp. SCN45 0.69 GFF2141 GTP-binding and nucleic acid-binding protein YchF 0.51 GFF2045 Peptide chain release factor 3 low > 127
Rhodanobacter denitrificans MT42 0.68 LRK55_RS03425 redox-regulated ATPase YchF 0.68 LRK55_RS05155 peptide chain release factor 3 — —
Rhodanobacter denitrificans FW104-10B01 0.68 LRK54_RS03675 redox-regulated ATPase YchF 0.68 LRK54_RS05380 peptide chain release factor 3 — —
Rhodanobacter sp. FW510-T8 0.68 OKGIIK_10565 Ribosome-binding ATPase YchF 0.68 OKGIIK_01430 prfC peptide chain release factor 3 — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.68 GFF630 GTP-binding and nucleic acid-binding protein YchF 0.52 GFF768 Peptide chain release factor 3 low > 90
Acidovorax sp. GW101-3H11 0.65 Ac3H11_4001 GTP-binding and nucleic acid-binding protein YchF 0.53 Ac3H11_3041 Peptide chain release factor 3 — —
Sinorhizobium meliloti 1021 0.59 SMc02695 GTP-dependent nucleic acid-binding protein EngD 0.48 SMc00427 peptide chain release factor RF-3 protein low > 103
Phaeobacter inhibens DSM 17395 0.59 PGA1_c04950 GTP-dependent nucleic acid-binding protein EngD 0.46 PGA1_c10620 peptide chain release factor 3 — —
Rhodopseudomonas palustris CGA009 0.59 TX73_022570 redox-regulated ATPase YchF 0.48 TX73_011820 peptide chain release factor 3 low > 86
Dinoroseobacter shibae DFL-12 0.58 Dshi_0954 GTP-binding protein YchF (RefSeq) 0.45 Dshi_1336 peptide chain release factor 3 (RefSeq) — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.58 Echvi_2525 GTP-binding protein YchF 0.51 Echvi_0584 peptide chain release factor 3 low > 79
Bacteroides ovatus ATCC 8483 0.57 BACOVA_02821 GTP-binding protein YchF 0.46 BACOVA_04458 peptide chain release factor 3 — —
Bacteroides thetaiotaomicron VPI-5482 0.57 BT3116 GTP-binding protein (NCBI ptt file) 0.46 BT1729 peptide chain release factor 3 (RF-3) (NCBI ptt file) — —
Magnetospirillum magneticum AMB-1 0.57 AMB_RS21985 redox-regulated ATPase YchF 0.53 AMB_RS01375 peptide chain release factor 3 — —
Azospirillum sp. SherDot2 0.57 MPMX19_01641 Ribosome-binding ATPase YchF 0.52 MPMX19_01192 Peptide chain release factor 3 — —
Pedobacter sp. GW460-11-11-14-LB5 0.57 CA265_RS13275 redox-regulated ATPase YchF 0.47 CA265_RS18435 peptide chain release factor 3 0.56 29
Parabacteroides merdae CL09T00C40 0.57 HMPREF1078_RS06345 redox-regulated ATPase YchF 0.48 HMPREF1078_RS04145 peptide chain release factor 3 0.70 38
Phocaeicola dorei CL03T12C01 0.56 ABI39_RS05450 redox-regulated ATPase YchF 0.47 ABI39_RS00385 peptide chain release factor 3 — —
Synechococcus elongatus PCC 7942 0.56 Synpcc7942_0554 ychF translation-associated GTPase 0.43 Synpcc7942_2365 prfC peptide chain release factor 3 low > 38
Azospirillum brasilense Sp245 0.56 AZOBR_RS30645 GTP-binding protein YchF 0.54 AZOBR_RS14730 peptide chain release factor 3 — —
Phocaeicola vulgatus CL09T03C04 0.56 HMPREF1058_RS11490 redox-regulated ATPase YchF 0.47 HMPREF1058_RS07935 peptide chain release factor 3 — —
Sphingomonas koreensis DSMZ 15582 0.56 Ga0059261_3227 GTP-binding protein YchF 0.47 Ga0059261_2044 peptide chain release factor 3 low > 68
Rhizobium sp. OAE497 0.56 ABIE40_RS13100 redox-regulated ATPase YchF 0.47 ABIE40_RS01450 peptide chain release factor 3 — —
Rhodospirillum rubrum S1H 0.56 Rru_A3748 hypothetical protein (NCBI) 0.51 Rru_A2497 Peptide chain release factor 3 (NCBI) 0.63 41
Caulobacter crescentus NA1000 0.55 CCNA_00512 GTP-binding protein, probable translation factor 0.43 CCNA_01123 peptide chain release factor RF-3 low > 66
Brevundimonas sp. GW460-12-10-14-LB2 0.55 A4249_RS09035 redox-regulated ATPase YchF 0.43 A4249_RS15275 peptide chain release factor 3 low > 48
Caulobacter crescentus NA1000 Δfur 0.55 CCNA_00512 GTP-binding protein, probable translation factor 0.43 CCNA_01123 peptide chain release factor RF-3 low > 67
Agrobacterium fabrum C58 0.55 Atu2233 GTP-binding protein 0.47 Atu0315 peptide chain release factor 3 — —
Bosea sp. OAE506 0.55 ABIE41_RS11295 redox-regulated ATPase YchF 0.47 ABIE41_RS06180 peptide chain release factor 3 — —
Desulfovibrio vulgaris Hildenborough JW710 0.53 DVU1429 GTP-binding protein (TIGR) 0.59 DVU3116 prfC peptide chain release factor 3 (TIGR) low > 55
Bacteroides stercoris CC31F 0.52 HMPREF1181_RS02000 redox-regulated ATPase YchF 0.46 HMPREF1181_RS05585 peptide chain release factor 3 low > 56
Desulfovibrio vulgaris Miyazaki F 0.51 DvMF_0234 GTP-dependent nucleic acid-binding protein EngD (RefSeq) 0.60 DvMF_2372 prfC peptide chain release factor 3 (RefSeq) low > 51

Not shown: 8 genomes with orthologs for IAI47_11310 only; 1 genomes with orthologs for IAI47_03375 only