Conservation of cofitness between PS417_02485 and PS417_02555 in Pseudomonas simiae WCS417

93 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_02485 tRNA delta(2)-isopentenylpyrophosphate transferase 1.0 PS417_02555 exoribonuclease R 0.32 17
Pseudomonas fluorescens SBW25 0.98 PFLU_RS02565 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.95 PFLU_RS02625 ribonuclease R low > 109
Pseudomonas fluorescens SBW25-INTG 0.98 PFLU_RS02565 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.95 PFLU_RS02625 ribonuclease R low > 109
Pseudomonas fluorescens FW300-N2E3 0.89 AO353_13140 tRNA dimethylallyltransferase 0.91 AO353_13200 exoribonuclease R low > 101
Pseudomonas fluorescens GW456-L13 0.88 PfGW456L13_155 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.90 PfGW456L13_144 3'-to-5' exoribonuclease RNase R low > 87
Pseudomonas fluorescens FW300-N1B4 0.88 Pf1N1B4_1413 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.90 Pf1N1B4_1403 3'-to-5' exoribonuclease RNase R — —
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_08660 tRNA dimethylallyltransferase 0.98 AO356_08610 exoribonuclease R low > 104
Pseudomonas fluorescens FW300-N2E2 0.87 Pf6N2E2_3615 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.98 Pf6N2E2_3607 3'-to-5' exoribonuclease RNase R — —
Pseudomonas sp. RS175 0.86 PFR28_05120 tRNA dimethylallyltransferase 0.91 PFR28_05130 Ribonuclease R low > 88
Pseudomonas syringae pv. syringae B728a 0.85 Psyr_0571 tRNA isopentenyltransferase 0.87 Psyr_0579 RNAse R low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.85 Psyr_0571 tRNA isopentenyltransferase 0.87 Psyr_0579 RNAse R low > 86
Pseudomonas putida KT2440 0.77 PP_4895 tRNA dimethylallyltransferase 0.80 PP_4880 exoribonuclease R 0.39 23
Pseudomonas stutzeri RCH2 0.75 Psest_0682 tRNA dimethylallyltransferase 0.76 Psest_0691 ribonuclease R — —
Pseudomonas sp. S08-1 0.73 OH686_09475 tRNA dimethylallyltransferase 0.77 OH686_15910 ribonuclease R low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.59 OHPLBJKB_03871 tRNA dimethylallyltransferase 0.46 OHPLBJKB_03863 Ribonuclease R — —
Escherichia coli BL21 0.59 ECD_04038 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase 0.46 ECD_04046 exoribonuclease R, RNase R 0.44 48
Klebsiella michiganensis M5al 0.59 BWI76_RS02530 tRNA dimethylallyltransferase 0.46 BWI76_RS02575 exoribonuclease R low > 92
Escherichia coli ECOR27 0.59 NOLOHH_04525 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.46 NOLOHH_04485 rnr ribonuclease R — —
Escherichia coli BW25113 0.59 b4171 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) 0.46 b4179 vacB putative enzyme (VIMSS) 0.30 75
Escherichia coli ECOR38 0.59 HEPCGN_10490 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.46 HEPCGN_10450 rnr ribonuclease R low > 85
Vibrio cholerae E7946 ATCC 55056 0.59 CSW01_01830 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.44 CSW01_13155 ribonuclease R low > 62
Escherichia coli ECRC98 0.59 JDDGAC_15900 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.46 JDDGAC_15860 rnr ribonuclease R — —
Escherichia coli ECRC102 0.59 NIAGMN_10110 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.46 NIAGMN_10070 rnr ribonuclease R — —
Escherichia coli ECRC99 0.59 KEDOAH_15895 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.46 KEDOAH_15935 rnr ribonuclease R — —
Escherichia coli ECRC101 0.59 OKFHMN_12260 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.46 OKFHMN_12220 rnr ribonuclease R — —
Escherichia coli ECRC62 0.59 BNILDI_06965 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.46 BNILDI_07005 rnr ribonuclease R — —
Escherichia fergusonii Becca 0.59 EFB2_04364 tRNA dimethylallyltransferase 0.46 EFB2_04356 Ribonuclease R low > 86
Escherichia coli ECRC101 0.59 MCAODC_02775 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.46 MCAODC_02735 rnr ribonuclease R — —
Escherichia coli Nissle 1917 0.59 ECOLIN_RS24225 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.46 ECOLIN_RS24265 ribonuclease R low > 52
Enterobacter asburiae PDN3 0.59 EX28DRAFT_3368 tRNA dimethylallyltransferase 0.45 EX28DRAFT_3376 ribonuclease R low > 76
Enterobacter sp. TBS_079 0.58 MPMX20_00452 tRNA dimethylallyltransferase 0.45 MPMX20_00460 Ribonuclease R low > 85
Dickeya dadantii 3937 0.58 DDA3937_RS18615 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.45 DDA3937_RS17260 ribonuclease R low > 74
Dickeya dianthicola ME23 0.58 DZA65_RS19685 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.45 DZA65_RS18405 ribonuclease R low > 75
Rahnella sp. WP5 0.58 EX31_RS08825 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.46 EX31_RS08785 ribonuclease R low > 89
Dickeya dianthicola 67-19 0.58 HGI48_RS18550 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.45 HGI48_RS17315 ribonuclease R low > 71
Shewanella oneidensis MR-1 0.58 SO0602 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI ptt file) 0.44 SO3935 vacB ribonuclease R (NCBI ptt file) low > 76
Pectobacterium carotovorum WPP14 0.58 HER17_RS02580 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.45 HER17_RS03835 ribonuclease R low > 75
Shewanella loihica PV-4 0.57 Shew_0565 tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) 0.44 Shew_3289 ribonuclease R (RefSeq) low > 60
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.57 GFF824 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.46 GFF832 '3'-to-5' exoribonuclease RNase R' transl_table=11 low > 78
Serratia liquefaciens MT49 0.57 IAI46_01620 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.45 IAI46_01660 ribonuclease R low > 86
Pantoea sp. MT58 0.57 IAI47_02585 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.46 IAI47_02625 ribonuclease R low > 76
Marinobacter adhaerens HP15 0.56 HP15_2500 tRNA delta(2)-isopentenylpyrophosphate transferase 0.47 HP15_622 exoribonuclease R — —
Shewanella sp. ANA-3 0.56 Shewana3_0596 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) 0.44 Shewana3_0697 RNAse R (RefSeq) — —
Shewanella amazonensis SB2B 0.56 Sama_3026 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) 0.41 Sama_3067 exoribonuclease II (RefSeq) — —
Alteromonas macleodii MIT1002 0.56 MIT1002_03789 tRNA dimethylallyltransferase 0.44 MIT1002_03606 Ribonuclease R — —
Erwinia tracheiphila SCR3 0.54 LU632_RS02050 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.46 LU632_RS21750 rnr ribonuclease R low > 74
Kangiella aquimarina DSM 16071 0.53 B158DRAFT_1951 tRNA dimethylallyltransferase 0.44 B158DRAFT_1989 ribonuclease R low > 40
Dechlorosoma suillum PS 0.53 Dsui_1552 tRNA isopentenyltransferase MiaA 0.43 Dsui_3128 ribonuclease R — —
Dyella japonica UNC79MFTsu3.2 0.52 ABZR86_RS08370 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.40 ABZR86_RS08270 ribonuclease R — —
Rhodanobacter sp. FW510-T8 0.52 OKGIIK_06625 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.39 OKGIIK_06755 rnr ribonuclease R — —
Herbaspirillum seropedicae SmR1 0.52 HSERO_RS04185 tRNA delta(2)-isopentenylpyrophosphate transferase 0.42 HSERO_RS09290 ribonuclease R — —
Rhodanobacter denitrificans FW104-10B01 0.51 LRK54_RS00635 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.40 LRK54_RS00495 ribonuclease R low > 59
Rhodanobacter denitrificans MT42 0.51 LRK55_RS00405 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.40 LRK55_RS00235 ribonuclease R — —
Ralstonia solanacearum PSI07 0.51 RPSI07_RS12065 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.42 RPSI07_RS18030 ribonuclease R low > 81
Paraburkholderia bryophila 376MFSha3.1 0.51 H281DRAFT_04711 tRNA dimethylallyltransferase 0.41 H281DRAFT_00712 RNAse R — —
Paraburkholderia graminis OAS925 0.51 ABIE53_000875 tRNA dimethylallyltransferase 0.42 ABIE53_001940 ribonuclease R 0.37 54
Ralstonia solanacearum GMI1000 0.51 RS_RS12855 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.42 RS_RS06155 ribonuclease R low > 80
Ralstonia sp. UNC404CL21Col 0.50 ABZR87_RS00875 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.41 ABZR87_RS10985 ribonuclease R low > 80
Paraburkholderia sabiae LMG 24235 0.50 QEN71_RS26440 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.42 QEN71_RS22925 ribonuclease R — —
Ralstonia solanacearum UW163 0.49 UW163_RS08390 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.42 UW163_RS12810 ribonuclease R — —
Ralstonia solanacearum IBSBF1503 0.49 RALBFv3_RS05235 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.42 RALBFv3_RS15345 ribonuclease R low > 76
Cupriavidus basilensis FW507-4G11 0.49 RR42_RS17210 tRNA delta(2)-isopentenylpyrophosphate transferase 0.43 RR42_RS13065 ribonuclease R — —
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS03645 tRNA dimethylallyltransferase 0.42 BPHYT_RS08455 ribonuclease R low > 109
Castellaniella sp019104865 MT123 0.48 ABCV34_RS08790 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.38 ABCV34_RS06625 ribonuclease R — —
Lysobacter sp. OAE881 0.47 ABIE51_RS06535 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.37 ABIE51_RS07475 ribonuclease R low > 62
Variovorax sp. OAS795 0.46 ABID97_RS20320 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.37 ABID97_RS17200 ribonuclease R — —
Variovorax sp. SCN45 0.46 GFF4798 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.37 GFF399 3'-to-5' exoribonuclease RNase R — —
Xanthomonas campestris pv. campestris strain 8004 0.44 Xcc-8004.3121.1 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.38 Xcc-8004.3370.1 3'-to-5' exoribonuclease RNase R — —
Acinetobacter radioresistens SK82 0.43 MPMX26_01208 tRNA dimethylallyltransferase 0.34 MPMX26_02684 Ribonuclease R — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF5491 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.36 GFF4921 3'-to-5' exoribonuclease RNase R low > 90
Synechococcus elongatus PCC 7942 0.30 Synpcc7942_2490 miaA tRNA delta(2)-isopentenylpyrophosphate transferase 0.13 Synpcc7942_1911 zam Cold shock protein 0.66 1
Sinorhizobium meliloti 1021 0.28 SMc01435 tRNA delta(2)-isopentenylpyrophosphate transferase 0.22 SMc01365 exoribonuclease II protein — —
Rhizobium sp. OAE497 0.27 ABIE40_RS11505 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.23 ABIE40_RS07350 ribonuclease R — —
Rhodopseudomonas palustris CGA009 0.26 TX73_010460 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.20 TX73_016160 ribonuclease R low > 86
Agrobacterium fabrum C58 0.26 Atu2039 tRNA delta(2)-isopentenylpyrophosphate 0.22 Atu1303 exoribonuclease — —
Pedobacter sp. GW460-11-11-14-LB5 0.26 CA265_RS02960 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.20 CA265_RS10530 ribonuclease R low > 88
Pontibacter actiniarum KMM 6156, DSM 19842 0.26 CA264_12070 tRNA dimethylallyltransferase 0.20 CA264_17355 ribonuclease R low > 74
Sphingomonas koreensis DSMZ 15582 0.26 Ga0059261_0069 tRNA dimethylallyltransferase 0.18 Ga0059261_3266 ribonuclease R low > 68
Caulobacter crescentus NA1000 0.25 CCNA_02183 tRNA delta(2)-isopentenylpyrophosphate transferase 0.20 CCNA_02537 ribonuclease R — —
Caulobacter crescentus NA1000 Δfur 0.25 CCNA_02183 tRNA delta(2)-isopentenylpyrophosphate transferase 0.20 CCNA_02537 ribonuclease R — —
Bacteroides ovatus ATCC 8483 0.24 BACOVA_05050 tRNA dimethylallyltransferase 0.20 BACOVA_02736 ribonuclease R low > 94
Echinicola vietnamensis KMM 6221, DSM 17526 0.24 Echvi_2323 tRNA dimethylallyltransferase 0.20 Echvi_0669 ribonuclease R — —
Bosea sp. OAE506 0.23 ABIE41_RS12880 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.18 ABIE41_RS18140 ribonuclease R low > 77
Bacteroides thetaiotaomicron VPI-5482 0.23 BT4203 tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI ptt file) 0.20 BT3077 ribonuclease R (NCBI ptt file) — —
Azospirillum brasilense Sp245 0.23 AZOBR_RS06550 tRNA delta(2)-isopentenylpyrophosphate transferase 0.22 AZOBR_RS16165 ribonuclease R — —
Azospirillum sp. SherDot2 0.22 MPMX19_01778 tRNA dimethylallyltransferase 0.21 MPMX19_01812 Ribonuclease R — —
Phocaeicola dorei CL03T12C01 0.22 ABI39_RS00520 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.21 ABI39_RS06100 ribonuclease R low > 72
Phocaeicola vulgatus CL09T03C04 0.22 HMPREF1058_RS08065 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.21 HMPREF1058_RS10970 ribonuclease R low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.21 A4249_RS05030 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.20 A4249_RS08325 ribonuclease R — —
Magnetospirillum magneticum AMB-1 0.21 AMB_RS17735 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.22 AMB_RS04465 ribonuclease R low > 64
Parabacteroides merdae CL09T00C40 0.21 HMPREF1078_RS13930 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.21 HMPREF1078_RS05885 ribonuclease R low > 61
Rhodospirillum rubrum S1H 0.19 Rru_A0466 tRNA isopentenyltransferase (NCBI) 0.22 Rru_A3203 ribonuclease R (NCBI) — —
Phaeobacter inhibens DSM 17395 0.18 PGA1_c14200 tRNA delta(2)-isopentenylpyrophosphate transferase MiaA 0.19 PGA1_c36430 putative ribonuclease R — —
Dinoroseobacter shibae DFL-12 0.17 Dshi_1492 tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) 0.15 Dshi_0015 ribonuclease R (RefSeq) — —

Not shown: 8 genomes with orthologs for PS417_02485 only; 0 genomes with orthologs for PS417_02555 only