Conservation of cofitness between GFF4044 and GFF3357 in Hydrogenophaga sp. GW460-11-11-14-LB1

96 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF4044 ATP-dependent protease La (EC 3.4.21.53) Type I 1.0 GFF3357 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.74 16
Acidovorax sp. GW101-3H11 0.86 Ac3H11_937 ATP-dependent protease La (EC 3.4.21.53) Type I 0.73 Ac3H11_1532 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.52 41
Variovorax sp. OAS795 0.83 ABID97_RS17590 endopeptidase La 0.61 ABID97_RS08440 tRNA pseudouridine(38-40) synthase TruA 0.55 79
Variovorax sp. SCN45 0.82 GFF487 ATP-dependent protease La (EC 3.4.21.53) Type I 0.62 GFF3885 tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) low > 127
Ralstonia sp. UNC404CL21Col 0.77 ABZR87_RS12785 endopeptidase La 0.48 ABZR87_RS14510 tRNA pseudouridine(38-40) synthase TruA 0.39 49
Ralstonia solanacearum PSI07 0.77 RPSI07_RS16135 endopeptidase La 0.49 RPSI07_RS14720 tRNA pseudouridine(38-40) synthase TruA — —
Paraburkholderia sabiae LMG 24235 0.77 QEN71_RS21975 endopeptidase La 0.53 QEN71_RS17635 tRNA pseudouridine(38-40) synthase TruA 0.58 99
Ralstonia solanacearum UW163 0.76 UW163_RS14650 endopeptidase La 0.50 UW163_RS11130 tRNA pseudouridine(38-40) synthase TruA — —
Ralstonia solanacearum IBSBF1503 0.76 RALBFv3_RS01340 endopeptidase La 0.50 RALBFv3_RS02595 tRNA pseudouridine(38-40) synthase TruA — —
Ralstonia solanacearum GMI1000 0.76 RS_RS08655 endopeptidase La 0.49 RS_RS09975 tRNA pseudouridine(38-40) synthase TruA — —
Paraburkholderia bryophila 376MFSha3.1 0.76 H281DRAFT_00898 ATP-dependent proteinase. Serine peptidase. MEROPS family S16 0.54 H281DRAFT_06069 tRNA pseudouridine38-40 synthase — —
Burkholderia phytofirmans PsJN 0.76 BPHYT_RS09460 peptidase 0.54 BPHYT_RS33885 tRNA pseudouridine synthase A — —
Herbaspirillum seropedicae SmR1 0.76 HSERO_RS12905 peptidase 0.49 HSERO_RS16485 tRNA pseudouridine synthase A — —
Cupriavidus basilensis FW507-4G11 0.76 RR42_RS09030 DNA-binding protein 0.45 RR42_RS14370 tRNA pseudouridine synthase A — —
Castellaniella sp019104865 MT123 0.74 ABCV34_RS05125 endopeptidase La 0.52 ABCV34_RS04265 tRNA pseudouridine(38-40) synthase TruA — —
Paraburkholderia graminis OAS925 0.74 ABIE53_002117 ATP-dependent Lon protease 0.54 ABIE53_004807 tRNA pseudouridine38-40 synthase low > 113
Dechlorosoma suillum PS 0.72 Dsui_2198 ATP-dependent protease La 0.56 Dsui_3194 pseudouridylate synthase I low > 51
Klebsiella michiganensis M5al 0.66 BWI76_RS06535 endopeptidase La 0.46 BWI76_RS20380 tRNA pseudouridine(38-40) synthase TruA low > 92
Dickeya dadantii 3937 0.66 DDA3937_RS05650 endopeptidase La 0.43 DDA3937_RS14465 tRNA pseudouridine(38-40) synthase TruA low > 74
Pectobacterium carotovorum WPP14 0.66 HER17_RS15840 endopeptidase La 0.43 HER17_RS06990 tRNA pseudouridine(38-40) synthase TruA — —
Dickeya dianthicola ME23 0.66 DZA65_RS06020 endopeptidase La 0.43 DZA65_RS15370 tRNA pseudouridine(38-40) synthase TruA low > 75
Dickeya dianthicola 67-19 0.66 HGI48_RS05695 endopeptidase La 0.43 HGI48_RS14435 tRNA pseudouridine(38-40) synthase TruA low > 71
Erwinia tracheiphila SCR3 0.66 LU632_RS18335 lon endopeptidase La 0.44 LU632_RS07825 truA tRNA pseudouridine(38-40) synthase TruA — —
Shewanella loihica PV-4 0.66 Shew_2506 ATP-dependent protease La (RefSeq) 0.42 Shew_2306 tRNA pseudouridine synthase A (RefSeq) — —
Shewanella sp. ANA-3 0.65 Shewana3_2659 Lon-A peptidase (RefSeq) 0.44 Shewana3_1479 truA tRNA pseudouridine synthase A (RefSeq) — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.65 GFF4355 ATP-dependent protease La (EC 3.4.21.53) Type I 0.45 GFF1934 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.53 57
Enterobacter sp. TBS_079 0.65 MPMX20_01030 Lon protease 0.45 MPMX20_03253 tRNA pseudouridine synthase A low > 85
Escherichia coli ECRC102 0.65 NIAGMN_06375 Lon protease 0.45 NIAGMN_20445 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC98 0.65 JDDGAC_11975 Lon protease 0.45 JDDGAC_26630 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC101 0.65 OKFHMN_08320 Lon protease 0.45 OKFHMN_22670 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC101 0.65 MCAODC_27545 Lon protease 0.45 MCAODC_13710 truA aspartate-semialdehyde dehydrogenase — —
Enterobacter asburiae PDN3 0.65 EX28DRAFT_2531 endopeptidase La 0.45 EX28DRAFT_0286 tRNA pseudouridine(38-40) synthase low > 76
Serratia liquefaciens MT49 0.65 IAI46_05020 endopeptidase La 0.43 IAI46_17840 tRNA pseudouridine(38-40) synthase TruA low > 86
Escherichia coli ECRC99 0.65 KEDOAH_19645 Lon protease 0.45 KEDOAH_05525 truA aspartate-semialdehyde dehydrogenase — —
Pseudomonas fluorescens FW300-N2C3 0.65 AO356_01740 DNA-binding protein 0.45 AO356_21435 pseudouridine synthase low > 104
Pseudomonas sp. RS175 0.65 PFR28_01230 Lon protease 0.44 PFR28_02817 tRNA pseudouridine synthase A low > 88
Escherichia coli ECRC62 0.65 BNILDI_22670 lon_P403L Lon protease 0.45 BNILDI_13225 truA tRNA pseudouridine(38-40) synthase TruA — —
Escherichia coli ECOR38 0.65 HEPCGN_06935 lon_P403L Lon protease 0.45 HEPCGN_21875 truA aspartate-semialdehyde dehydrogenase low > 85
Escherichia coli BL21 0.65 ECD_00391 DNA-binding ATP-dependent protease La 0.44 ECD_02243 tRNA pseudouridine(38-40) synthase — —
Escherichia coli ECOR27 0.65 NOLOHH_01255 lon_P403L Lon protease 0.44 NOLOHH_14305 truA tRNA pseudouridine(38-40) synthase TruA low > 57
Pseudomonas fluorescens FW300-N2E2 0.65 Pf6N2E2_2216 ATP-dependent protease La (EC 3.4.21.53) Type I 0.45 Pf6N2E2_70 tRNA pseudouridine synthase A (EC 4.2.1.70) — —
Alteromonas macleodii MIT1002 0.65 MIT1002_02757 Lon protease 0.42 MIT1002_02529 tRNA pseudouridine synthase A low > 70
Escherichia coli HS(pFamp)R (ATCC 700891) 0.65 OHPLBJKB_03234 Lon protease 0.44 OHPLBJKB_01387 tRNA pseudouridine synthase A low > 73
Escherichia coli BW25113 0.65 b0439 lon DNA-binding ATP-dependent protease La (NCBI) 0.44 b2318 truA tRNA pseudouridine synthase A (NCBI) 0.43 36
Escherichia coli Nissle 1917 0.65 ECOLIN_RS02635 endopeptidase La 0.45 ECOLIN_RS13435 tRNA pseudouridine(38-40) synthase TruA low > 52
Escherichia fergusonii Becca 0.65 EFB2_03618 Lon protease 0.44 EFB2_01540 tRNA pseudouridine synthase A low > 86
Vibrio cholerae E7946 ATCC 55056 0.65 CSW01_09605 endopeptidase La 0.43 CSW01_05090 tRNA pseudouridine(38-40) synthase TruA low > 62
Pseudomonas fluorescens SBW25-INTG 0.65 PFLU_RS19160 endopeptidase La 0.45 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA low > 109
Pseudomonas simiae WCS417 0.65 PS417_17225 DNA-binding protein 0.44 PS417_18565 pseudouridine synthase — —
Pseudomonas fluorescens GW456-L13 0.65 PfGW456L13_2554 ATP-dependent protease La (EC 3.4.21.53) Type I 0.46 PfGW456L13_3941 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 87
Pseudomonas fluorescens SBW25 0.65 PFLU_RS19160 endopeptidase La 0.45 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.65 Psyr_1749 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 0.45 Psyr_1662 tRNA pseudouridine synthase low > 86
Pseudomonas fluorescens FW300-N1B4 0.65 Pf1N1B4_3947 ATP-dependent protease La (EC 3.4.21.53) Type I 0.46 Pf1N1B4_7 tRNA pseudouridine synthase A (EC 4.2.1.70) — —
Pseudomonas syringae pv. syringae B728a 0.65 Psyr_1749 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 0.45 Psyr_1662 tRNA pseudouridine synthase low > 86
Pantoea sp. MT58 0.65 IAI47_14645 endopeptidase La 0.44 IAI47_06245 tRNA pseudouridine(38-40) synthase TruA — —
Pseudomonas fluorescens FW300-N2E3 0.65 AO353_20185 DNA-binding protein 0.44 AO353_20660 pseudouridine synthase low > 101
Shewanella amazonensis SB2B 0.65 Sama_1226 endopeptidase La (RefSeq) 0.44 Sama_2150 truA tRNA pseudouridine synthase A (RefSeq) low > 62
Kangiella aquimarina DSM 16071 0.65 B158DRAFT_1038 ATP-dependent protease La 0.41 B158DRAFT_1483 pseudouridylate synthase I low > 40
Rahnella sp. WP5 0.65 EX31_RS22255 endopeptidase La 0.47 EX31_RS19600 tRNA pseudouridine(38-40) synthase TruA low > 89
Pseudomonas stutzeri RCH2 0.64 Psest_2285 ATP-dependent protease La 0.41 Psest_2585 pseudouridylate synthase I low > 67
Pseudomonas putida KT2440 0.64 PP_2302 DNA-binding, ATP-dependent protease 0.47 PP_1994 tRNA pseudouridine (38-40)synthase 0.36 17
Marinobacter adhaerens HP15 0.63 HP15_2183 DNA-binding ATP-dependent protease La 0.45 HP15_1829 tRNA pseudouridine synthase A 0.50 8
Pseudomonas sp. S08-1 0.63 OH686_03635 endopeptidase La 0.44 OH686_04450 tRNA pseudouridine(38-40) synthase low > 80
Magnetospirillum magneticum AMB-1 0.63 AMB_RS14035 endopeptidase La 0.31 AMB_RS01225 tRNA pseudouridine(38-40) synthase TruA low > 64
Azospirillum sp. SherDot2 0.63 MPMX19_01545 Lon protease 0.34 MPMX19_02005 tRNA pseudouridine synthase A — —
Lysobacter sp. OAE881 0.63 ABIE51_RS14145 endopeptidase La 0.40 ABIE51_RS08245 tRNA pseudouridine(38-40) synthase TruA low > 62
Rhodospirillum rubrum S1H 0.62 Rru_A1552 Peptidase S16, ATP-dependent protease La (NCBI) 0.35 Rru_A3352 Pseudouridylate synthase (NCBI) — —
Azospirillum brasilense Sp245 0.62 AZOBR_RS07145 peptidase 0.35 AZOBR_RS03570 tRNA pseudouridine synthase A — —
Xanthomonas campestris pv. campestris strain 8004 0.62 Xcc-8004.4046.1 ATP-dependent protease La (EC 3.4.21.53) Type I 0.37 Xcc-8004.1961.1 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 74
Dyella japonica UNC79MFTsu3.2 0.62 ABZR86_RS07320 endopeptidase La 0.40 ABZR86_RS08015 tRNA pseudouridine(38-40) synthase TruA low > 74
Rhodanobacter denitrificans FW104-10B01 0.61 LRK54_RS16735 endopeptidase La 0.40 LRK54_RS01700 tRNA pseudouridine(38-40) synthase TruA low > 59
Rhodanobacter denitrificans MT42 0.61 LRK55_RS16460 endopeptidase La 0.40 LRK55_RS01480 tRNA pseudouridine(38-40) synthase TruA low > 63
Rhodanobacter sp. FW510-T8 0.60 OKGIIK_08030 lon endopeptidase La 0.39 OKGIIK_04830 truA tRNA pseudouridine(38-40) synthase TruA — —
Caulobacter crescentus NA1000 0.60 CCNA_02037 ATP-dependent endopeptidase Lon 0.29 CCNA_00280 tRNA pseudouridine synthase A low > 66
Caulobacter crescentus NA1000 Δfur 0.60 CCNA_02037 ATP-dependent endopeptidase Lon 0.29 CCNA_00280 tRNA pseudouridine synthase A — —
Agrobacterium fabrum C58 0.60 Atu1261 ATP-dependent protease LA 0.28 Atu0368 tRNA pseudouridine synthase I — —
Rhizobium sp. OAE497 0.59 ABIE40_RS07100 endopeptidase La 0.29 ABIE40_RS01915 tRNA pseudouridine(38-40) synthase TruA — —
Bosea sp. OAE506 0.59 ABIE41_RS18050 endopeptidase La 0.31 ABIE41_RS00165 tRNA pseudouridine(38-40) synthase TruA — —
Sinorhizobium meliloti 1021 0.59 SMc01905 ATP-dependent protease LA protein 0.29 SMc01099 tRNA pseudouridine synthase A — —
Brevundimonas sp. GW460-12-10-14-LB2 0.59 A4249_RS06460 endopeptidase La 0.28 A4249_RS12340 tRNA pseudouridine(38-40) synthase TruA — —
Rhodopseudomonas palustris CGA009 0.59 TX73_015345 endopeptidase La 0.27 TX73_003225 tRNA pseudouridine(38-40) synthase TruA — —
Sphingomonas koreensis DSMZ 15582 0.58 Ga0059261_0102 endopeptidase La 0.25 Ga0059261_0647 tRNA pseudouridine(38-40) synthase low > 68
Phaeobacter inhibens DSM 17395 0.58 PGA1_c20540 ATP-dependent protease La 0.23 PGA1_c05650 tRNA pseudouridine synthase A — —
Dinoroseobacter shibae DFL-12 0.56 Dshi_1777 ATP-dependent protease La (RefSeq) 0.27 Dshi_1938 tRNA pseudouridine synthase A (RefSeq) low > 64
Acinetobacter radioresistens SK82 0.53 MPMX26_02299 Lon protease 0.38 MPMX26_00352 tRNA pseudouridine synthase A low > 36
Desulfovibrio vulgaris Hildenborough JW710 0.51 DVU1337 lon ATP-dependent protease La (TIGR) 0.20 DVU0911 truA tRNA pseudouridine synthase A (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.51 DvMF_0112 ATP-dependent protease La (RefSeq) 0.21 DvMF_1395 truA tRNA pseudouridine synthase A (RefSeq) low > 51
Mucilaginibacter yixingensis YX-36 DSM 26809 0.42 ABZR88_RS15670 endopeptidase La 0.18 ABZR88_RS21140 tRNA pseudouridine(38-40) synthase TruA low > 71
Fusobacterium nucleatum SB010 0.41 HUW76_01065 endopeptidase La 0.20 HUW76_09850 tRNA pseudouridine(38-40) synthase TruA low > 35
Pontibacter actiniarum KMM 6156, DSM 19842 0.41 CA264_00045 endopeptidase La 0.22 CA264_17725 tRNA pseudouridine synthase A low > 74
Bacteroides stercoris CC31F 0.41 HMPREF1181_RS14340 endopeptidase La 0.21 HMPREF1181_RS06250 tRNA pseudouridine(38-40) synthase TruA 0.61 55
Pedobacter sp. GW460-11-11-14-LB5 0.40 CA265_RS14555 endopeptidase La 0.22 CA265_RS15580 tRNA pseudouridine(38-40) synthase TruA low > 88
Echinicola vietnamensis KMM 6221, DSM 17526 0.40 Echvi_4670 ATP-dependent protease La 0.23 Echvi_1728 pseudouridylate synthase I low > 79
Bacteroides ovatus ATCC 8483 0.40 BACOVA_02571 endopeptidase La 0.22 BACOVA_05075 tRNA pseudouridine synthase A low > 94
Phocaeicola vulgatus CL09T03C04 0.39 HMPREF1058_RS01210 endopeptidase La 0.23 HMPREF1058_RS16775 tRNA pseudouridine(38-40) synthase TruA low > 67
Phocaeicola dorei CL03T12C01 0.39 ABI39_RS16520 endopeptidase La 0.24 ABI39_RS12690 tRNA pseudouridine(38-40) synthase TruA low > 72
Parabacteroides merdae CL09T00C40 0.39 HMPREF1078_RS16185 endopeptidase La 0.23 HMPREF1078_RS16085 tRNA pseudouridine(38-40) synthase TruA low > 61

Not shown: 1 genomes with orthologs for GFF4044 only; 3 genomes with orthologs for GFF3357 only