Conservation of cofitness between PGA1_c35050 and PGA1_c18160 in Phaeobacter inhibens DSM 17395

90 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Phaeobacter inhibens DSM 17395 1.0 PGA1_c35050 oxygen-independent coproporphyrinogen III oxidase HemN 1.0 PGA1_c18160 trigger factor Tig 0.25 20
Dinoroseobacter shibae DFL-12 0.64 Dshi_3460 putative oxygen-independent coproporphyrinogen III oxidase (RefSeq) 0.82 Dshi_2190 trigger factor (RefSeq) low > 64
Azospirillum brasilense Sp245 0.51 AZOBR_RS02195 coproporphyrinogen III oxidase 0.42 AZOBR_RS07130 trigger factor low > 97
Agrobacterium fabrum C58 0.50 Atu0325 oxygen-independent coproporphyrinogen III oxidase 0.36 Atu1664 trigger factor
Sinorhizobium meliloti 1021 0.49 SMc01147 coproporphyrinogen III oxidase 0.41 SMc02050 trigger factor low > 103
Rhizobium sp. OAE497 0.49 ABIE40_RS01625 radical SAM family heme chaperone HemW 0.39 ABIE40_RS08600 trigger factor
Rhodopseudomonas palustris CGA009 0.49 TX73_001700 radical SAM family heme chaperone HemW 0.39 TX73_015360 trigger factor
Bosea sp. OAE506 0.48 ABIE41_RS03305 radical SAM family heme chaperone HemW 0.38 ABIE41_RS18065 trigger factor low > 77
Azospirillum sp. SherDot2 0.48 MPMX19_02574 Heme chaperone HemW 0.41 MPMX19_01549 Trigger factor
Magnetospirillum magneticum AMB-1 0.45 AMB_RS22770 radical SAM protein 0.40 AMB_RS14050 trigger factor
Sphingomonas koreensis DSMZ 15582 0.43 Ga0059261_2753 putative oxygen-independent coproporphyrinogen III oxidase 0.41 Ga0059261_0089 trigger factor low > 68
Rhodospirillum rubrum S1H 0.42 Rru_A3639 Putative oxygen-independent coproporphyrinogen III oxidase (NCBI) 0.39 Rru_A1549 Trigger factor (NCBI) 0.56 32
Brevundimonas sp. GW460-12-10-14-LB2 0.40 A4249_RS12445 radical SAM family heme chaperone HemW 0.40 A4249_RS06500 trigger factor
Caulobacter crescentus NA1000 Δfur 0.39 CCNA_00144 oxygen-independent coproporphyrinogen-III oxidase 0.39 CCNA_02042 trigger factor chaperone low > 67
Caulobacter crescentus NA1000 0.39 CCNA_00144 oxygen-independent coproporphyrinogen-III oxidase 0.39 CCNA_02042 trigger factor chaperone low > 66
Castellaniella sp019104865 MT123 0.34 ABCV34_RS03525 radical SAM family heme chaperone HemW 0.21 ABCV34_RS05140 trigger factor
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_04010 oxygen-independent coproporphyrinogen-3 oxidase 0.21 H281DRAFT_00895 trigger factor 0.39 62
Paraburkholderia sabiae LMG 24235 0.33 QEN71_RS03635 radical SAM family heme chaperone HemW 0.22 QEN71_RS21990 trigger factor 0.71 97
Paraburkholderia graminis OAS925 0.33 ABIE53_003236 putative oxygen-independent coproporphyrinogen III oxidase 0.20 ABIE53_002114 trigger factor 0.47 55
Ralstonia solanacearum PSI07 0.33 RPSI07_RS13830 oxygen-independent coproporphyrinogen III oxidase-like protein 0.21 RPSI07_RS16120 trigger factor 0.55 16
Lysobacter sp. OAE881 0.33 ABIE51_RS17300 radical SAM family heme chaperone HemW 0.17 ABIE51_RS14160 trigger factor low > 62
Burkholderia phytofirmans PsJN 0.32 BPHYT_RS15335 coproporphyrinogen III oxidase 0.21 BPHYT_RS09445 trigger factor low > 109
Dechlorosoma suillum PS 0.32 Dsui_0491 putative oxygen-independent coproporphyrinogen III oxidase 0.21 Dsui_2195 trigger factor 0.50 10
Pseudomonas fluorescens SBW25-INTG 0.32 PFLU_RS28405 radical SAM family heme chaperone HemW 0.23 PFLU_RS19175 trigger factor low > 109
Pseudomonas fluorescens FW300-N2E2 0.32 Pf6N2E2_4593 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB 0.24 Pf6N2E2_2219 Cell division trigger factor (EC 5.2.1.8) low > 103
Pseudomonas fluorescens SBW25 0.32 PFLU_RS28405 radical SAM family heme chaperone HemW 0.23 PFLU_RS19175 trigger factor low > 109
Cupriavidus basilensis FW507-4G11 0.31 RR42_RS04880 coproporphyrinogen III oxidase 0.21 RR42_RS09015 trigger factor 0.31 127
Pseudomonas simiae WCS417 0.31 PS417_26760 oxidase 0.24 PS417_17240 trigger factor low > 88
Pseudomonas fluorescens GW456-L13 0.31 PfGW456L13_1003 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB 0.24 PfGW456L13_2551 Cell division trigger factor (EC 5.2.1.8) low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.31 Psyr_0471 coproporphyrinogen III oxidase, anaerobic 0.24 Psyr_1746 Trigger factor low > 86
Pseudomonas fluorescens FW300-N2E3 0.31 AO353_08200 coproporphyrinogen III oxidase 0.23 AO353_20170 trigger factor low > 101
Pseudomonas syringae pv. syringae B728a 0.31 Psyr_0471 coproporphyrinogen III oxidase, anaerobic 0.24 Psyr_1746 Trigger factor low > 86
Herbaspirillum seropedicae SmR1 0.31 HSERO_RS10665 coproporphyrinogen III oxidase 0.22 HSERO_RS12920 trigger factor low > 78
Ralstonia solanacearum GMI1000 0.31 RS_RS10840 oxygen-independent coproporphyrinogen III oxidase-like protein 0.20 RS_RS08640 trigger factor 0.26 65
Ralstonia solanacearum IBSBF1503 0.31 RALBFv3_RS03355 oxygen-independent coproporphyrinogen III oxidase-like protein 0.21 RALBFv3_RS01355 trigger factor
Ralstonia solanacearum UW163 0.31 UW163_RS10365 oxygen-independent coproporphyrinogen III oxidase-like protein 0.21 UW163_RS14665 trigger factor
Pseudomonas fluorescens FW300-N1B4 0.31 Pf1N1B4_2334 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB 0.24 Pf1N1B4_3944 Cell division trigger factor (EC 5.2.1.8)
Ralstonia sp. UNC404CL21Col 0.31 ABZR87_RS15265 radical SAM family heme chaperone HemW 0.21 ABZR87_RS12800 trigger factor low > 80
Xanthomonas campestris pv. campestris strain 8004 0.31 Xcc-8004.1224.1 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB 0.16 Xcc-8004.4049.1 Cell division trigger factor (EC 5.2.1.8) low > 74
Pseudomonas fluorescens FW300-N2C3 0.31 AO356_13390 coproporphyrinogen III oxidase 0.24 AO356_01755 trigger factor low > 104
Pseudomonas sp. RS175 0.31 PFR28_04249 Heme chaperone HemW 0.23 PFR28_01227 Trigger factor low > 88
Dyella japonica UNC79MFTsu3.2 0.30 ABZR86_RS11910 radical SAM family heme chaperone HemW 0.17 ABZR86_RS07335 trigger factor low > 74
Shewanella oneidensis MR-1 0.30 SO3359 oxygen-independent coproporphyrinogen III oxidase, putative (NCBI ptt file) 0.21 SO1793 tig trigger factor (NCBI ptt file) low > 76
Hydrogenophaga sp. GW460-11-11-14-LB1 0.30 GFF3256 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB 0.20 GFF4040 Cell division trigger factor (EC 5.2.1.8) low > 90
Rhodanobacter denitrificans FW104-10B01 0.30 LRK54_RS11735 radical SAM family heme chaperone HemW 0.17 LRK54_RS16720 trigger factor low > 59
Rhodanobacter denitrificans MT42 0.30 LRK55_RS11460 radical SAM family heme chaperone HemW 0.17 LRK55_RS16445 trigger factor 0.67 43
Shewanella sp. ANA-3 0.30 Shewana3_1188 putative oxygen-independent coproporphyrinogen III oxidase (RefSeq) 0.22 Shewana3_2662 tig trigger factor (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.29 MIT1002_00939 Oxygen-independent coproporphyrinogen-III oxidase 1 0.25 MIT1002_02761 Trigger factor low > 70
Variovorax sp. OAS795 0.29 ABID97_RS23630 radical SAM family heme chaperone HemW 0.22 ABID97_RS17605 trigger factor low > 91
Pseudomonas putida KT2440 0.29 PP_5101 coproporphyrinogen/heterocyclic compound oxidase (aerobic) 0.25 PP_2299 Trigger factor 0.35 80
Dickeya dianthicola ME23 0.29 DZA65_RS18460 radical SAM family heme chaperone HemW 0.22 DZA65_RS06005 trigger factor low > 75
Klebsiella michiganensis M5al 0.29 BWI76_RS24120 YggW family oxidoreductase 0.24 BWI76_RS06520 trigger factor low > 92
Vibrio cholerae E7946 ATCC 55056 0.29 CSW01_02425 YggW family oxidoreductase 0.22 CSW01_09620 trigger factor low > 62
Dickeya dianthicola 67-19 0.29 HGI48_RS17370 radical SAM family heme chaperone HemW 0.22 HGI48_RS05680 trigger factor low > 71
Variovorax sp. SCN45 0.29 GFF2383 Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW 0.22 GFF490 Cell division trigger factor (EC 5.2.1.8) 0.83 29
Dickeya dadantii 3937 0.29 DDA3937_RS17325 radical SAM family heme chaperone HemW 0.22 DDA3937_RS05635 trigger factor low > 74
Serratia liquefaciens MT49 0.28 IAI46_21435 radical SAM family heme chaperone HemW 0.24 IAI46_05005 trigger factor low > 86
Pseudomonas stutzeri RCH2 0.28 Psest_0276 putative oxygen-independent coproporphyrinogen III oxidase 0.24 Psest_2288 trigger factor low > 67
Pectobacterium carotovorum WPP14 0.28 HER17_RS03785 radical SAM family heme chaperone HemW 0.23 HER17_RS15855 trigger factor low > 75
Enterobacter sp. TBS_079 0.28 MPMX20_03813 Heme chaperone HemW 0.24 MPMX20_01027 Trigger factor 0.34 51
Rhodanobacter sp. FW510-T8 0.28 OKGIIK_12160 hemW radical SAM family heme chaperone HemW 0.19 OKGIIK_08045 tig trigger factor low > 52
Erwinia tracheiphila SCR3 0.28 LU632_RS05445 hemW radical SAM family heme chaperone HemW 0.23 LU632_RS18350 tig trigger factor low > 74
Rahnella sp. WP5 0.28 EX31_RS02710 radical SAM family heme chaperone HemW 0.25 EX31_RS22240 trigger factor low > 89
Enterobacter asburiae PDN3 0.28 EX28DRAFT_2993 putative oxygen-independent coproporphyrinogen III oxidase 0.24 EX28DRAFT_2535 trigger factor 0.59 33
Kangiella aquimarina DSM 16071 0.28 B158DRAFT_0201 coproporphyrinogen III oxidase, anaerobic (EC 1.3.99.22) 0.24 B158DRAFT_1033 trigger factor low > 40
Pantoea sp. MT58 0.28 IAI47_03580 radical SAM family heme chaperone HemW 0.24 IAI47_14660 trigger factor low > 76
Shewanella loihica PV-4 0.28 Shew_1131 putative oxygen-independent coproporphyrinogen III oxidase (RefSeq) 0.24 Shew_2509 tig trigger factor (RefSeq) low > 60
Shewanella amazonensis SB2B 0.28 Sama_2483 oxygen-independent coproporphyrinogen III oxidase, putative (RefSeq) 0.24 Sama_1223 tig trigger factor (RefSeq) low > 62
Escherichia coli Nissle 1917 0.28 ECOLIN_RS16435 radical SAM family heme chaperone HemW 0.24 ECOLIN_RS02620 trigger factor low > 52
Escherichia coli ECOR38 0.28 HEPCGN_18540 hemW radical SAM family heme chaperone HemW 0.24 HEPCGN_06955 tig trigger factor low > 85
Escherichia coli BL21 0.28 ECD_02785 HemN family putative oxidoreductase 0.24 ECD_00387 peptidyl-prolyl cis/trans isomerase (trigger factor) low > 60
Escherichia fergusonii Becca 0.28 EFB2_00947 Heme chaperone HemW 0.23 EFB2_03621 Trigger factor low > 86
Pseudomonas sp. S08-1 0.28 OH686_11020 Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW 0.25 OH686_03650 trigger factor low > 80
Escherichia coli ECRC101 0.28 MCAODC_09755 hemW radical SAM family heme chaperone HemW 0.24 MCAODC_27565 tig trigger factor
Escherichia coli ECRC102 0.28 NIAGMN_17000 hemW radical SAM family heme chaperone HemW 0.24 NIAGMN_06395 tig trigger factor
Escherichia coli ECRC99 0.28 KEDOAH_08905 hemW radical SAM family heme chaperone HemW 0.24 KEDOAH_19625 tig trigger factor
Escherichia coli BW25113 0.28 b2955 yggW coproporphyrinogen III oxidase (NCBI) 0.24 b0436 tig trigger factor (NCBI) low > 76
Escherichia coli ECRC101 0.28 OKFHMN_19235 hemW radical SAM family heme chaperone HemW 0.24 OKFHMN_08340 tig trigger factor
Escherichia coli ECRC98 0.28 JDDGAC_22865 hemW radical SAM family heme chaperone HemW 0.24 JDDGAC_11995 tig trigger factor
Escherichia coli HS(pFamp)R (ATCC 700891) 0.27 OHPLBJKB_00761 Oxygen-independent coproporphyrinogen-III oxidase-like protein YqeR 0.24 OHPLBJKB_03237 Trigger factor low > 73
Acidovorax sp. GW101-3H11 0.27 Ac3H11_3672 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB 0.23 Ac3H11_934 Cell division trigger factor (EC 5.2.1.8) low > 79
Escherichia coli ECRC62 0.27 BNILDI_09685 hemW radical SAM family heme chaperone HemW 0.23 BNILDI_22690 tig trigger factor
Desulfovibrio vulgaris Miyazaki F 0.27 DvMF_2374 oxygen-independent coproporphyrinogen III oxidase (RefSeq) 0.15 DvMF_0109 trigger factor (RefSeq)
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.27 GFF3058 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB 0.24 GFF4352 Cell division trigger factor (EC 5.2.1.8) low > 78
Escherichia coli ECOR27 0.27 NOLOHH_11105 hemW radical SAM family heme chaperone HemW 0.24 NOLOHH_01275 tig trigger factor low > 57
Marinobacter adhaerens HP15 0.27 HP15_280 putative oxygen-independent coproporphyrinogen III oxidase 0.25 HP15_2186 trigger factor low > 73
Synechococcus elongatus PCC 7942 0.26 Synpcc7942_2382 hemN coproporphyrinogen III oxidase 0.14 Synpcc7942_2524 tig trigger factor
Pontibacter actiniarum KMM 6156, DSM 19842 0.25 CA264_16765 coproporphyrinogen III oxidase 0.09 CA264_01415 trigger factor low > 74
Acinetobacter radioresistens SK82 0.25 MPMX26_00308 Heme chaperone HemW 0.22 MPMX26_00407 Trigger factor low > 36
Mycobacterium tuberculosis H37Rv 0.24 Rv2388c Probable oxygen-independent coproporphyrinogen III oxidase HemN (coproporphyrinogenase) (coprogen oxidase) 0.11 Rv2462c Probable trigger factor (TF) protein Tig low > 58
Bifidobacterium breve UCC2003 0.24 BBR_RS15235 coproporphyrinogen III oxidase 0.11 BBR_RS14495 trigger factor low > 34

Not shown: 7 genomes with orthologs for PGA1_c35050 only; 2 genomes with orthologs for PGA1_c18160 only