| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Marinobacter adhaerens HP15 | 1.0 | HP15_487 | | DNA repair protein RadA | 1.0 | HP15_1568 | | excinuclease ABC subunit C | 0.76 | 12 |
| Enterobacter asburiae PDN3 | 0.73 | EX28DRAFT_3597 | | DNA repair protein RadA | 0.49 | EX28DRAFT_0634 | | Excinuclease ABC subunit C | low | > 76 |
| Enterobacter sp. TBS_079 | 0.73 | MPMX20_00694 | | DNA repair protein RadA | 0.50 | MPMX20_02838 | | UvrABC system protein C | low | > 85 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.72 | OHPLBJKB_03672 | | DNA repair protein RadA | 0.51 | OHPLBJKB_01816 | | UvrABC system protein C | 0.56 | 11 |
| Escherichia coli Nissle 1917 | 0.72 | ECOLIN_RS25190 | | DNA repair protein RadA | 0.51 | ECOLIN_RS10895 | | excinuclease ABC subunit UvrC | low | > 52 |
| Rahnella sp. WP5 | 0.72 | EX31_RS04030 | | DNA repair protein RadA | 0.49 | EX31_RS24150 | | excinuclease ABC subunit UvrC | low | > 89 |
| Escherichia coli BL21 | 0.72 | ECD_04265 | | DNA repair protein | 0.51 | ECD_01878 | | excinuclease UvrABC, endonuclease subunit | 0.67 | 21 |
| Escherichia fergusonii Becca | 0.72 | EFB2_04057 | | DNA repair protein RadA | 0.51 | EFB2_02033 | | UvrABC system protein C | low | > 86 |
| Escherichia coli BW25113 | 0.72 | b4389 | radA | predicted repair protein (NCBI) | 0.51 | b1913 | uvrC | excinuclease ABC, subunit C; repair of UV damage to DNA (VIMSS) | 0.49 | 8 |
| Escherichia coli ECRC62 | 0.72 | BNILDI_08075 | radA | DNA repair protein RadA | 0.51 | BNILDI_15235 | uvrC | excinuclease ABC subunit UvrC | — | — |
| Escherichia coli ECRC99 | 0.72 | KEDOAH_16960 | radA | DNA repair protein RadA | 0.51 | KEDOAH_02265 | uvrC | excinuclease ABC subunit UvrC | — | — |
| Shewanella sp. ANA-3 | 0.72 | Shewana3_1049 | | DNA repair protein RadA (RefSeq) | 0.49 | Shewana3_1609 | uvrC | excinuclease ABC subunit C (RefSeq) | low | > 73 |
| Escherichia coli ECRC98 | 0.72 | JDDGAC_14790 | radA | DNA repair protein RadA | 0.51 | JDDGAC_00415 | uvrC | excinuclease ABC subunit UvrC | — | — |
| Escherichia coli ECRC102 | 0.72 | NIAGMN_09045 | radA | DNA repair protein RadA | 0.51 | NIAGMN_02225 | uvrC | excinuclease ABC subunit UvrC | — | — |
| Escherichia coli ECOR27 | 0.72 | NOLOHH_03520 | radA | DNA repair protein RadA | 0.51 | NOLOHH_16445 | uvrC | excinuclease ABC subunit UvrC | — | — |
| Escherichia coli ECRC101 | 0.72 | MCAODC_01710 | radA | DNA repair protein RadA | 0.51 | MCAODC_19565 | uvrC | excinuclease ABC subunit UvrC | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.72 | GFF1057 | | DNA repair protein RadA | 0.50 | GFF1700 | | Excinuclease ABC subunit C | low | > 78 |
| Escherichia coli ECRC101 | 0.72 | OKFHMN_11195 | radA | DNA repair protein RadA | 0.51 | OKFHMN_25825 | uvrC | excinuclease ABC subunit UvrC | — | — |
| Escherichia coli ECOR38 | 0.72 | HEPCGN_09195 | radA | DNA repair protein RadA | 0.51 | HEPCGN_04180 | uvrC | excinuclease ABC subunit UvrC | low | > 85 |
| Klebsiella michiganensis M5al | 0.72 | BWI76_RS04165 | | DNA repair protein RadA | 0.50 | BWI76_RS18330 | | excinuclease ABC subunit C | low | > 92 |
| Shewanella oneidensis MR-1 | 0.72 | SO1226 | radA | DNA repair protein RadA (NCBI ptt file) | 0.49 | SO1861 | uvrC | excinuclease ABC, C subunit (NCBI ptt file) | 0.58 | 3 |
| Pantoea sp. MT58 | 0.72 | IAI47_16345 | | DNA repair protein RadA | 0.50 | IAI47_12465 | | excinuclease ABC subunit UvrC | low | > 76 |
| Erwinia tracheiphila SCR3 | 0.71 | LU632_RS02550 | radA | DNA repair protein RadA | 0.50 | LU632_RS10195 | uvrC | excinuclease ABC subunit UvrC | low | > 74 |
| Serratia liquefaciens MT49 | 0.71 | IAI46_02945 | | DNA repair protein RadA | 0.50 | IAI46_09210 | | excinuclease ABC subunit UvrC | low | > 86 |
| Alteromonas macleodii MIT1002 | 0.70 | MIT1002_02706 | | Lon protease 2 | 0.48 | MIT1002_02153 | | Excinuclease ABC subunit C | low | > 70 |
| Shewanella amazonensis SB2B | 0.70 | Sama_0981 | | DNA repair protein RadA (RefSeq) | 0.48 | Sama_1608 | uvrC | excinuclease ABC subunit C (RefSeq) | 0.65 | 7 |
| Pectobacterium carotovorum WPP14 | 0.69 | HER17_RS19085 | | DNA repair protein RadA | 0.50 | HER17_RS07715 | | excinuclease ABC subunit UvrC | 0.64 | 60 |
| Vibrio cholerae E7946 ATCC 55056 | 0.69 | CSW01_11870 | | DNA repair protein RadA | 0.49 | CSW01_06140 | | excinuclease ABC subunit C | low | > 62 |
| Dickeya dianthicola ME23 | 0.68 | DZA65_RS02485 | | DNA repair protein RadA | 0.49 | DZA65_RS14285 | | excinuclease ABC subunit UvrC | low | > 75 |
| Dickeya dianthicola 67-19 | 0.68 | HGI48_RS02380 | | DNA repair protein RadA | 0.49 | HGI48_RS13795 | | excinuclease ABC subunit UvrC | 0.38 | 69 |
| Dickeya dadantii 3937 | 0.68 | DDA3937_RS02420 | | DNA repair protein RadA | 0.49 | DDA3937_RS13700 | | excinuclease ABC subunit UvrC | low | > 74 |
| Pseudomonas fluorescens GW456-L13 | 0.65 | PfGW456L13_1442 | | DNA repair protein RadA | 0.56 | PfGW456L13_2886 | | Excinuclease ABC subunit C | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.64 | AO353_13980 | | DNA repair protein RadA | 0.57 | AO353_21835 | | excinuclease ABC subunit C | 0.57 | 6 |
| Pseudomonas sp. RS175 | 0.64 | PFR28_03792 | | DNA repair protein RadA | 0.55 | PFR28_01411 | | UvrABC system protein C | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.64 | Pf1N1B4_2768 | | DNA repair protein RadA | 0.57 | Pf1N1B4_5618 | | Excinuclease ABC subunit C | 0.40 | 4 |
| Pseudomonas fluorescens SBW25 | 0.64 | PFLU_RS26230 | | DNA repair protein RadA | 0.57 | PFLU_RS10770 | | excinuclease ABC subunit UvrC | low | > 109 |
| Pseudomonas fluorescens FW300-N2C3 | 0.64 | AO356_15680 | | DNA repair protein RadA | 0.57 | AO356_00350 | | excinuclease ABC subunit C | 0.74 | 3 |
| Pseudomonas fluorescens SBW25-INTG | 0.64 | PFLU_RS26230 | | DNA repair protein RadA | 0.57 | PFLU_RS10770 | | excinuclease ABC subunit UvrC | 0.27 | 3 |
| Pseudomonas fluorescens FW300-N2E2 | 0.64 | Pf6N2E2_5076 | | DNA repair protein RadA | 0.55 | Pf6N2E2_2021 | | Excinuclease ABC subunit C | 0.36 | 10 |
| Pseudomonas simiae WCS417 | 0.64 | PS417_24305 | | DNA repair protein RadA | 0.57 | PS417_10725 | | excinuclease ABC subunit C | 0.41 | 6 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.64 | Psyr_4275 | | DNA replication and repair protein RadA | 0.57 | Psyr_2896 | | Excinuclease ABC subunit C | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.64 | Psyr_4275 | | DNA replication and repair protein RadA | 0.57 | Psyr_2896 | | Excinuclease ABC subunit C | low | > 86 |
| Pseudomonas sp. S08-1 | 0.64 | OH686_16185 | | DNA repair protein RadA | 0.56 | OH686_00340 | | excinuclease ABC subunit C | low | > 80 |
| Pseudomonas putida KT2440 | 0.64 | PP_4644 | | DNA repair enzyme | 0.56 | PP_4098 | | UvrABC system protein C | low | > 96 |
| Pseudomonas stutzeri RCH2 | 0.63 | Psest_3401 | | DNA repair protein RadA | 0.58 | Psest_2259 | | excinuclease ABC, C subunit | 0.60 | 4 |
| Kangiella aquimarina DSM 16071 | 0.62 | B158DRAFT_0877 | | DNA replication and repair protein RadA | 0.47 | B158DRAFT_1273 | | Excinuclease ABC subunit C | 0.54 | 18 |
| Acinetobacter radioresistens SK82 | 0.62 | MPMX26_02235 | | DNA repair protein RadA | 0.44 | MPMX26_00228 | | UvrABC system protein C | low | > 36 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.61 | Xcc-8004.3812.1 | | DNA repair protein RadA | 0.45 | Xcc-8004.2477.1 | | Excinuclease ABC subunit C | low | > 74 |
| Lysobacter sp. OAE881 | 0.60 | ABIE51_RS07685 | | DNA repair protein RadA | 0.44 | ABIE51_RS12455 | | excinuclease ABC subunit UvrC | low | > 62 |
| Rhodanobacter denitrificans FW104-10B01 | 0.59 | LRK54_RS02525 | | DNA repair protein RadA | 0.51 | LRK54_RS00380 | | excinuclease ABC subunit UvrC | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.59 | LRK55_RS02280 | | DNA repair protein RadA | 0.51 | LRK55_RS00120 | | excinuclease ABC subunit UvrC | low | > 63 |
| Rhodanobacter sp. FW510-T8 | 0.59 | OKGIIK_09580 | radA | DNA repair protein RadA | 0.50 | OKGIIK_06930 | uvrC | excinuclease ABC subunit UvrC | low | > 52 |
| Dyella japonica UNC79MFTsu3.2 | 0.59 | ABZR86_RS08845 | | DNA repair protein RadA | 0.50 | ABZR86_RS02245 | | excinuclease ABC subunit UvrC | 0.84 | 4 |
| Ralstonia sp. UNC404CL21Col | 0.55 | ABZR87_RS11670 | | DNA repair protein RadA | 0.43 | ABZR87_RS10245 | | excinuclease ABC subunit UvrC | 0.45 | 6 |
| Cupriavidus basilensis FW507-4G11 | 0.54 | RR42_RS12030 | | DNA repair protein RadA | 0.41 | RR42_RS14000 | | excinuclease ABC subunit C | — | — |
| Ralstonia solanacearum GMI1000 | 0.54 | RS_RS06880 | | DNA repair protein RadA | 0.41 | RS_RS05305 | | excinuclease ABC subunit UvrC | low | > 80 |
| Ralstonia solanacearum UW163 | 0.54 | UW163_RS13540 | | DNA repair protein RadA | 0.42 | UW163_RS11990 | | excinuclease ABC subunit UvrC | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.54 | RALBFv3_RS00210 | | DNA repair protein RadA | 0.42 | RALBFv3_RS14525 | | excinuclease ABC subunit UvrC | low | > 76 |
| Dechlorosoma suillum PS | 0.54 | Dsui_2413 | | DNA repair protein RadA | 0.46 | Dsui_2470 | | excinuclease ABC, C subunit | 0.71 | 5 |
| Ralstonia solanacearum PSI07 | 0.53 | RPSI07_RS17270 | | DNA repair protein RadA | 0.42 | RPSI07_RS18935 | | excinuclease ABC subunit UvrC | low | > 81 |
| Variovorax sp. OAS795 | 0.53 | ABID97_RS03770 | | DNA repair protein RadA | 0.40 | ABID97_RS10635 | | excinuclease ABC subunit UvrC | low | > 91 |
| Variovorax sp. SCN45 | 0.53 | GFF5087 | | DNA repair protein RadA | 0.39 | GFF2859 | | Excinuclease ABC subunit C | 0.43 | 57 |
| Herbaspirillum seropedicae SmR1 | 0.53 | HSERO_RS10745 | | DNA repair protein RadA | 0.41 | HSERO_RS09690 | | excinuclease ABC subunit C | 0.54 | 6 |
| Castellaniella sp019104865 MT123 | 0.51 | ABCV34_RS02345 | | DNA repair protein RadA | 0.41 | ABCV34_RS06980 | | excinuclease ABC subunit UvrC | low | > 48 |
| Acidovorax sp. GW101-3H11 | 0.50 | Ac3H11_3371 | | DNA repair protein RadA | 0.37 | Ac3H11_373 | | Excinuclease ABC subunit C | 0.47 | 41 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.49 | GFF1833 | | DNA repair protein RadA | 0.37 | GFF3847 | | Excinuclease ABC subunit C | — | — |
| Phocaeicola vulgatus CL09T03C04 | 0.43 | HMPREF1058_RS14715 | | DNA repair protein RadA | 0.25 | HMPREF1058_RS11525 | | excinuclease ABC subunit UvrC | 0.65 | 2 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.43 | Echvi_1031 | | DNA repair protein RadA | 0.26 | Echvi_0619 | | excinuclease ABC, C subunit | 0.67 | 6 |
| Phocaeicola dorei CL03T12C01 | 0.43 | ABI39_RS10420 | | DNA repair protein RadA | 0.25 | ABI39_RS05415 | | excinuclease ABC subunit UvrC | low | > 72 |
| Dinoroseobacter shibae DFL-12 | 0.42 | Dshi_2129 | | DNA repair protein RadA (RefSeq) | 0.38 | Dshi_0644 | | excinuclease ABC, C subunit (RefSeq) | 0.72 | 4 |
| Rhizobium sp. OAE497 | 0.42 | ABIE40_RS06280 | | DNA repair protein RadA | 0.36 | ABIE40_RS06500 | | excinuclease ABC subunit UvrC | — | — |
| Sinorhizobium meliloti 1021 | 0.42 | SMc00556 | | DNA repair protein RadA | 0.38 | SMc00602 | | excinuclease ABC subunit C | 0.60 | 9 |
| Phaeobacter inhibens DSM 17395 | 0.42 | PGA1_c10840 | | DNA repair protein RadA | 0.38 | PGA1_c02880 | | uvrABC system protein C | 0.49 | 4 |
| Agrobacterium fabrum C58 | 0.42 | Atu1077 | | DNA repair protein | 0.37 | Atu1129 | | excinuclease ABC chain C | 0.42 | 13 |
| Bacteroides stercoris CC31F | 0.42 | HMPREF1181_RS00075 | | DNA repair protein RadA | 0.25 | HMPREF1181_RS02095 | | excinuclease ABC subunit UvrC | low | > 56 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.42 | CA264_17125 | | DNA repair protein RadA | 0.23 | CA264_16350 | | excinuclease ABC subunit C | 0.55 | 7 |
| Rhodopseudomonas palustris CGA009 | 0.42 | TX73_015980 | | DNA repair protein RadA | 0.36 | TX73_006010 | | excinuclease ABC subunit UvrC | low | > 86 |
| Bacteroides ovatus ATCC 8483 | 0.42 | BACOVA_03019 | | DNA repair protein RadA | 0.25 | BACOVA_01365 | | excinuclease ABC, C subunit | low | > 94 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.42 | CA265_RS22660 | | DNA repair protein RadA | 0.24 | CA265_RS18110 | | excinuclease ABC subunit C | 0.44 | 22 |
| Sphingomonas koreensis DSMZ 15582 | 0.42 | Ga0059261_0751 | | DNA repair protein RadA | 0.36 | Ga0059261_3186 | | Excinuclease ABC subunit C | 0.49 | 8 |
| Parabacteroides merdae CL09T00C40 | 0.41 | HMPREF1078_RS08395 | | DNA repair protein RadA | 0.27 | HMPREF1078_RS06310 | | excinuclease ABC subunit UvrC | low | > 61 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.41 | BT2406 | | putative DNA repair protein (NCBI ptt file) | 0.25 | BT3266 | | excinuclease ABC subunit C (NCBI ptt file) | 0.57 | 6 |
| Magnetospirillum magneticum AMB-1 | 0.41 | AMB_RS10555 | | DNA repair protein RadA | 0.35 | AMB_RS19240 | | UvrABC system protein C | low | > 64 |
| Azospirillum brasilense Sp245 | 0.41 | AZOBR_RS08320 | | DNA repair protein RadA | 0.37 | AZOBR_RS08965 | | excinuclease ABC subunit C | 0.41 | 79 |
| Azospirillum sp. SherDot2 | 0.41 | MPMX19_00904 | | DNA repair protein RadA | 0.37 | MPMX19_01070 | | UvrABC system protein C | low | > 112 |
| Caulobacter crescentus NA1000 | 0.41 | CCNA_01732 | | DNA repair protein RadA | 0.32 | CCNA_02975 | | excinuclease ABC subunit C | 0.76 | 6 |
| Caulobacter crescentus NA1000 Δfur | 0.41 | CCNA_01732 | | DNA repair protein RadA | 0.32 | CCNA_02975 | | excinuclease ABC subunit C | low | > 67 |
| Synechococcus elongatus PCC 7942 | 0.40 | Synpcc7942_1452 | radA | DNA repair protein RadA | 0.25 | Synpcc7942_1945 | uvrC | excinuclease ABC subunit C | low | > 38 |
| Rhodospirillum rubrum S1H | 0.40 | Rru_A0406 | | DNA repair protein RadA (NCBI) | 0.36 | Rru_A2220 | | Excinuclease ABC, C subunit (NCBI) | low | > 58 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.40 | ABZR88_RS20495 | | DNA repair protein RadA | 0.24 | ABZR88_RS04150 | | excinuclease ABC subunit UvrC | low | > 71 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.40 | A4249_RS03745 | | DNA repair protein RadA | 0.34 | A4249_RS01670 | | excinuclease ABC subunit UvrC | low | > 48 |
| Shewanella loihica PV-4 | 0.39 | Shew_2807 | | DNA repair protein RadA (RefSeq) | 0.48 | Shew_1825 | uvrC | excinuclease ABC subunit C (RefSeq) | 0.91 | 2 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.36 | DVU1590 | radA | DNA repair protein RadA (TIGR) | 0.23 | DVU0801 | uvrC | excinuclease ABC, C subunit (TIGR) | low | > 55 |
| Fusobacterium nucleatum SB010 | 0.34 | HUW76_02270 | | DNA repair protein RadA | 0.27 | HUW76_06695 | | excinuclease ABC subunit UvrC | low | > 35 |
| Mycobacterium tuberculosis H37Rv | 0.33 | Rv3585 | | DNA repair protein RadA (DNA repair protein SMS) | 0.28 | Rv1420 | | Probable excinuclease ABC (subunit C-nuclease) UvrC | low | > 58 |
Not shown: 7 genomes with orthologs for HP15_487 only; 2 genomes with orthologs for HP15_1568 only