Conservation of cofitness between Psest_2285 and Psest_1259 in Pseudomonas stutzeri RCH2

96 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_2285 ATP-dependent protease La 1.0 Psest_1259 23S rRNA m2A2503 methyltransferase 0.34 5
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_2554 ATP-dependent protease La (EC 3.4.21.53) Type I 0.87 PfGW456L13_4865 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) low > 87
Pseudomonas fluorescens FW300-N2C3 0.91 AO356_01740 DNA-binding protein 0.87 AO356_06605 23S rRNA (adenine(2503)-C2)-methyltransferase low > 104
Pseudomonas sp. RS175 0.91 PFR28_01230 Lon protease 0.88 PFR28_00294 Dual-specificity RNA methyltransferase RlmN low > 88
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_2216 ATP-dependent protease La (EC 3.4.21.53) Type I 0.87 Pf6N2E2_3181 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-)
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_20185 DNA-binding protein 0.87 AO353_15875 23S rRNA (adenine(2503)-C2)-methyltransferase low > 101
Pseudomonas fluorescens FW300-N1B4 0.91 Pf1N1B4_3947 ATP-dependent protease La (EC 3.4.21.53) Type I 0.87 Pf1N1B4_857 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-)
Pseudomonas simiae WCS417 0.90 PS417_17225 DNA-binding protein 0.86 PS417_23160 50S rRNA methyltransferase
Pseudomonas fluorescens SBW25 0.90 PFLU_RS19160 endopeptidase La 0.87 PFLU_RS24815 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 109
Pseudomonas fluorescens SBW25-INTG 0.90 PFLU_RS19160 endopeptidase La 0.87 PFLU_RS24815 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 109
Pseudomonas sp. S08-1 0.90 OH686_03635 endopeptidase La 0.87 OH686_17515 23S rRNA (adenine(2503)-C(2))-methyltransferase low > 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.89 Psyr_1749 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 0.89 Psyr_1245 23S rRNA m(2)A-2503 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.89 Psyr_1749 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 0.89 Psyr_1245 23S rRNA m(2)A-2503 methyltransferase low > 86
Pseudomonas putida KT2440 0.88 PP_2302 DNA-binding, ATP-dependent protease 0.84 PP_0850 Dual-specificity RNA methyltransferase RlmN low > 96
Marinobacter adhaerens HP15 0.71 HP15_2183 DNA-binding ATP-dependent protease La 0.69 HP15_1490 conserved hypothetical protein 0.30 48
Shewanella loihica PV-4 0.70 Shew_2506 ATP-dependent protease La (RefSeq) 0.52 Shew_1287 hypothetical protein (RefSeq)
Shewanella oneidensis MR-1 0.70 SO1796 lon ATP-dependent protease La (NCBI ptt file) 0.53 SO3315 conserved hypothetical protein TIGR00048 (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.70 Shewana3_2659 Lon-A peptidase (RefSeq) 0.53 Shewana3_1226 hypothetical protein (RefSeq)
Dickeya dadantii 3937 0.69 DDA3937_RS05650 endopeptidase La 0.54 DDA3937_RS15480 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 74
Dickeya dianthicola 67-19 0.69 HGI48_RS05695 endopeptidase La 0.54 HGI48_RS15590 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 71
Dickeya dianthicola ME23 0.69 DZA65_RS06020 endopeptidase La 0.54 DZA65_RS16665 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 75
Klebsiella michiganensis M5al 0.69 BWI76_RS06535 endopeptidase La 0.55 BWI76_RS21095 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 92
Serratia liquefaciens MT49 0.69 IAI46_05020 endopeptidase La 0.55 IAI46_19290 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 86
Pectobacterium carotovorum WPP14 0.69 HER17_RS15840 endopeptidase La 0.54 HER17_RS06085 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN
Rahnella sp. WP5 0.69 EX31_RS22255 endopeptidase La 0.56 EX31_RS20525 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 89
Shewanella amazonensis SB2B 0.69 Sama_1226 endopeptidase La (RefSeq) 0.53 Sama_2368 hypothetical protein (RefSeq) low > 62
Enterobacter sp. TBS_079 0.68 MPMX20_01030 Lon protease 0.55 MPMX20_03395 Dual-specificity RNA methyltransferase RlmN low > 85
Erwinia tracheiphila SCR3 0.68 LU632_RS18335 lon endopeptidase La 0.55 LU632_RS17815 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN
Enterobacter asburiae PDN3 0.68 EX28DRAFT_2531 endopeptidase La 0.55 EX28DRAFT_0126 23S rRNA (adenine(2503)-C(2))-methyltransferase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.68 GFF4355 ATP-dependent protease La (EC 3.4.21.53) Type I 0.55 GFF2414 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) low > 78
Pantoea sp. MT58 0.68 IAI47_14645 endopeptidase La 0.54 IAI47_05040 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN
Escherichia coli BW25113 0.68 b0439 lon DNA-binding ATP-dependent protease La (NCBI) 0.55 b2517 yfgB predicted enzyme (NCBI) low > 76
Vibrio cholerae E7946 ATCC 55056 0.68 CSW01_09605 endopeptidase La 0.53 CSW01_03930 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 62
Escherichia coli BL21 0.68 ECD_00391 DNA-binding ATP-dependent protease La 0.55 ECD_02409 dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent low > 60
Escherichia coli ECOR38 0.68 HEPCGN_06935 lon_P403L Lon protease 0.55 HEPCGN_20830 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 85
Escherichia coli ECRC62 0.68 BNILDI_22670 lon_P403L Lon protease 0.55 BNILDI_12160 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN
Escherichia coli Nissle 1917 0.68 ECOLIN_RS02635 endopeptidase La 0.55 ECOLIN_RS14300 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 52
Alteromonas macleodii MIT1002 0.68 MIT1002_02757 Lon protease 0.51 MIT1002_02791 Dual-specificity RNA methyltransferase RlmN low > 70
Escherichia coli ECOR27 0.68 NOLOHH_01255 lon_P403L Lon protease 0.55 NOLOHH_13360 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 0.68 OHPLBJKB_03234 Lon protease 0.55 OHPLBJKB_01192 Dual-specificity RNA methyltransferase RlmN low > 73
Escherichia coli ECRC101 0.68 MCAODC_27545 Lon protease 0.55 MCAODC_12240 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN
Escherichia fergusonii Becca 0.68 EFB2_03618 Lon protease 0.55 EFB2_01373 Dual-specificity RNA methyltransferase RlmN low > 86
Escherichia coli ECRC102 0.68 NIAGMN_06375 Lon protease 0.55 NIAGMN_19480 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN
Escherichia coli ECRC99 0.68 KEDOAH_19645 Lon protease 0.55 KEDOAH_06510 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN
Escherichia coli ECRC98 0.68 JDDGAC_11975 Lon protease 0.55 JDDGAC_25385 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN
Escherichia coli ECRC101 0.68 OKFHMN_08320 Lon protease 0.55 OKFHMN_21710 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN
Ralstonia sp. UNC404CL21Col 0.68 ABZR87_RS12785 endopeptidase La 0.56 ABZR87_RS10900 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 80
Ralstonia solanacearum UW163 0.67 UW163_RS14650 endopeptidase La 0.55 UW163_RS12725 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN
Ralstonia solanacearum IBSBF1503 0.67 RALBFv3_RS01340 endopeptidase La 0.55 RALBFv3_RS15260 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN
Ralstonia solanacearum PSI07 0.67 RPSI07_RS16135 endopeptidase La 0.56 RPSI07_RS18115 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN
Ralstonia solanacearum GMI1000 0.67 RS_RS08655 endopeptidase La 0.56 RS_RS06070 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN
Paraburkholderia sabiae LMG 24235 0.67 QEN71_RS21975 endopeptidase La 0.54 QEN71_RS05965 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.69 44
Kangiella aquimarina DSM 16071 0.66 B158DRAFT_1038 ATP-dependent protease La 0.56 B158DRAFT_1149 23S rRNA m2A2503 methyltransferase low > 40
Lysobacter sp. OAE881 0.66 ABIE51_RS14145 endopeptidase La 0.56 ABIE51_RS09415 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 62
Dyella japonica UNC79MFTsu3.2 0.66 ABZR86_RS07320 endopeptidase La 0.53 ABZR86_RS05455 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 74
Rhodanobacter sp. FW510-T8 0.66 OKGIIK_08030 lon endopeptidase La 0.54 OKGIIK_07140 rlmN 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 52
Paraburkholderia bryophila 376MFSha3.1 0.66 H281DRAFT_00898 ATP-dependent proteinase. Serine peptidase. MEROPS family S16 0.53 H281DRAFT_00514 23S rRNA m(2)A-2503 methyltransferase
Rhodanobacter denitrificans MT42 0.66 LRK55_RS16460 endopeptidase La 0.54 LRK55_RS18065 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 63
Rhodanobacter denitrificans FW104-10B01 0.66 LRK54_RS16735 endopeptidase La 0.54 LRK54_RS00070 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 59
Burkholderia phytofirmans PsJN 0.66 BPHYT_RS09460 peptidase 0.53 BPHYT_RS12590 dual-specificity RNA methyltransferase RlmN
Dechlorosoma suillum PS 0.66 Dsui_2198 ATP-dependent protease La 0.54 Dsui_3145 23S rRNA m2A2503 methyltransferase
Cupriavidus basilensis FW507-4G11 0.66 RR42_RS09030 DNA-binding protein 0.56 RR42_RS13155 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN
Xanthomonas campestris pv. campestris strain 8004 0.66 Xcc-8004.4046.1 ATP-dependent protease La (EC 3.4.21.53) Type I 0.54 Xcc-8004.2737.1 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) low > 74
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS12905 peptidase 0.54 HSERO_RS14810 50S rRNA methyltransferase
Hydrogenophaga sp. GW460-11-11-14-LB1 0.65 GFF4044 ATP-dependent protease La (EC 3.4.21.53) Type I 0.50 GFF4866 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.70 26
Castellaniella sp019104865 MT123 0.65 ABCV34_RS05125 endopeptidase La 0.50 ABCV34_RS02610 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN
Acidovorax sp. GW101-3H11 0.65 Ac3H11_937 ATP-dependent protease La (EC 3.4.21.53) Type I 0.52 Ac3H11_1791 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) low > 79
Paraburkholderia graminis OAS925 0.64 ABIE53_002117 ATP-dependent Lon protease 0.53 ABIE53_002744 23S rRNA (adenine2503-C2)-methyltransferase low > 113
Variovorax sp. OAS795 0.64 ABID97_RS17590 endopeptidase La 0.49 ABID97_RS14210 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.57 58
Azospirillum brasilense Sp245 0.63 AZOBR_RS07145 peptidase 0.45 AZOBR_RS00800 50S rRNA methyltransferase low > 97
Azospirillum sp. SherDot2 0.63 MPMX19_01545 Lon protease 0.45 MPMX19_02413 Dual-specificity RNA methyltransferase RlmN low > 112
Variovorax sp. SCN45 0.63 GFF487 ATP-dependent protease La (EC 3.4.21.53) Type I 0.49 GFF992 23S rRNA (adenine(2503)-C(2))-methyltransferase @ tRNA (adenine(37)-C(2))-methyltransferase (EC 2.1.1.192) low > 127
Magnetospirillum magneticum AMB-1 0.63 AMB_RS14035 endopeptidase La 0.41 AMB_RS05715 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 64
Caulobacter crescentus NA1000 Δfur 0.61 CCNA_02037 ATP-dependent endopeptidase Lon 0.43 CCNA_00133 radical SAM family enzyme
Caulobacter crescentus NA1000 0.61 CCNA_02037 ATP-dependent endopeptidase Lon 0.43 CCNA_00133 radical SAM family enzyme low > 66
Rhodopseudomonas palustris CGA009 0.61 TX73_015345 endopeptidase La 0.41 TX73_002060 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN
Rhizobium sp. OAE497 0.61 ABIE40_RS07100 endopeptidase La 0.41 ABIE40_RS18200 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN
Sinorhizobium meliloti 1021 0.61 SMc01905 ATP-dependent protease LA protein 0.41 SMc03831 hypothetical protein
Agrobacterium fabrum C58 0.60 Atu1261 ATP-dependent protease LA 0.42 Atu2673 hypothetical protein
Brevundimonas sp. GW460-12-10-14-LB2 0.60 A4249_RS06460 endopeptidase La 0.43 A4249_RS12865 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN
Phaeobacter inhibens DSM 17395 0.59 PGA1_c20540 ATP-dependent protease La 0.44 PGA1_c36240 ribosomal RNA large subunit methyltransferase N
Bosea sp. OAE506 0.59 ABIE41_RS18050 endopeptidase La 0.40 ABIE41_RS04880 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN
Dinoroseobacter shibae DFL-12 0.59 Dshi_1777 ATP-dependent protease La (RefSeq) 0.42 Dshi_3311 radical SAM enzyme, Cfr family (RefSeq) low > 64
Sphingomonas koreensis DSMZ 15582 0.58 Ga0059261_0102 endopeptidase La 0.39 Ga0059261_1407 23S rRNA (adenine(2503)-C(2))-methyltransferase low > 68
Acinetobacter radioresistens SK82 0.55 MPMX26_02299 Lon protease 0.59 MPMX26_00426 Dual-specificity RNA methyltransferase RlmN low > 36
Desulfovibrio vulgaris Miyazaki F 0.53 DvMF_0112 ATP-dependent protease La (RefSeq) 0.33 DvMF_1431 radical SAM enzyme, Cfr family (RefSeq) low > 51
Desulfovibrio vulgaris Hildenborough JW710 0.52 DVU1337 lon ATP-dependent protease La (TIGR) 0.33 DVU2904 radical SAM enzyme, Cfr family (TIGR) low > 55
Mucilaginibacter yixingensis YX-36 DSM 26809 0.44 ABZR88_RS15670 endopeptidase La 0.28 ABZR88_RS00655 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 71
Fusobacterium nucleatum SB010 0.43 HUW76_01065 endopeptidase La 0.29 HUW76_07445 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 35
Pontibacter actiniarum KMM 6156, DSM 19842 0.42 CA264_00045 endopeptidase La 0.31 CA264_15910 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 74
Pedobacter sp. GW460-11-11-14-LB5 0.42 CA265_RS14555 endopeptidase La 0.29 CA265_RS19115 23S rRNA (adenine(2503)-C(2))-methyltransferase low > 88
Echinicola vietnamensis KMM 6221, DSM 17526 0.42 Echvi_4670 ATP-dependent protease La 0.31 Echvi_0755 23S rRNA m2A2503 methyltransferase 0.27 41
Bacteroides stercoris CC31F 0.41 HMPREF1181_RS14340 endopeptidase La 0.31 HMPREF1181_RS05775 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 56
Bacteroides ovatus ATCC 8483 0.40 BACOVA_02571 endopeptidase La 0.31 BACOVA_05204 23S rRNA m2A2503 methyltransferase low > 94
Phocaeicola vulgatus CL09T03C04 0.40 HMPREF1058_RS01210 endopeptidase La 0.30 HMPREF1058_RS17025 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 67
Phocaeicola dorei CL03T12C01 0.40 ABI39_RS16520 endopeptidase La 0.31 ABI39_RS12945 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.51 16
Parabacteroides merdae CL09T00C40 0.39 HMPREF1078_RS16185 endopeptidase La 0.29 HMPREF1078_RS14530 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 61

Not shown: 1 genomes with orthologs for Psest_2285 only; 3 genomes with orthologs for Psest_1259 only