Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
Pseudomonas stutzeri RCH2 | 1.0 | Psest_2285 | | ATP-dependent protease La | 1.0 | Psest_1259 | | 23S rRNA m2A2503 methyltransferase | 0.34 | 5 |
Pseudomonas fluorescens GW456-L13 | 0.91 | PfGW456L13_2554 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.87 | PfGW456L13_4865 | | Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) | low | > 87 |
Pseudomonas fluorescens FW300-N2C3 | 0.91 | AO356_01740 | | DNA-binding protein | 0.87 | AO356_06605 | | 23S rRNA (adenine(2503)-C2)-methyltransferase | low | > 104 |
Pseudomonas sp. RS175 | 0.91 | PFR28_01230 | | Lon protease | 0.88 | PFR28_00294 | | Dual-specificity RNA methyltransferase RlmN | low | > 88 |
Pseudomonas fluorescens FW300-N2E2 | 0.91 | Pf6N2E2_2216 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.87 | Pf6N2E2_3181 | | Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) | — | — |
Pseudomonas fluorescens FW300-N2E3 | 0.91 | AO353_20185 | | DNA-binding protein | 0.87 | AO353_15875 | | 23S rRNA (adenine(2503)-C2)-methyltransferase | low | > 101 |
Pseudomonas fluorescens FW300-N1B4 | 0.91 | Pf1N1B4_3947 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.87 | Pf1N1B4_857 | | Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) | — | — |
Pseudomonas simiae WCS417 | 0.90 | PS417_17225 | | DNA-binding protein | 0.86 | PS417_23160 | | 50S rRNA methyltransferase | — | — |
Pseudomonas fluorescens SBW25 | 0.90 | PFLU_RS19160 | | endopeptidase La | 0.87 | PFLU_RS24815 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | low | > 109 |
Pseudomonas fluorescens SBW25-INTG | 0.90 | PFLU_RS19160 | | endopeptidase La | 0.87 | PFLU_RS24815 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | low | > 109 |
Pseudomonas sp. S08-1 | 0.90 | OH686_03635 | | endopeptidase La | 0.87 | OH686_17515 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase | low | > 80 |
Pseudomonas syringae pv. syringae B728a ΔmexB | 0.89 | Psyr_1749 | | ATP-dependent proteinase, Serine peptidase, MEROPS family S16 | 0.89 | Psyr_1245 | | 23S rRNA m(2)A-2503 methyltransferase | low | > 86 |
Pseudomonas syringae pv. syringae B728a | 0.89 | Psyr_1749 | | ATP-dependent proteinase, Serine peptidase, MEROPS family S16 | 0.89 | Psyr_1245 | | 23S rRNA m(2)A-2503 methyltransferase | low | > 86 |
Pseudomonas putida KT2440 | 0.88 | PP_2302 | | DNA-binding, ATP-dependent protease | 0.84 | PP_0850 | | Dual-specificity RNA methyltransferase RlmN | low | > 96 |
Marinobacter adhaerens HP15 | 0.71 | HP15_2183 | | DNA-binding ATP-dependent protease La | 0.69 | HP15_1490 | | conserved hypothetical protein | 0.30 | 48 |
Shewanella loihica PV-4 | 0.70 | Shew_2506 | | ATP-dependent protease La (RefSeq) | 0.52 | Shew_1287 | | hypothetical protein (RefSeq) | — | — |
Shewanella oneidensis MR-1 | 0.70 | SO1796 | lon | ATP-dependent protease La (NCBI ptt file) | 0.53 | SO3315 | | conserved hypothetical protein TIGR00048 (NCBI ptt file) | low | > 76 |
Shewanella sp. ANA-3 | 0.70 | Shewana3_2659 | | Lon-A peptidase (RefSeq) | 0.53 | Shewana3_1226 | | hypothetical protein (RefSeq) | — | — |
Dickeya dadantii 3937 | 0.69 | DDA3937_RS05650 | | endopeptidase La | 0.54 | DDA3937_RS15480 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | low | > 74 |
Dickeya dianthicola 67-19 | 0.69 | HGI48_RS05695 | | endopeptidase La | 0.54 | HGI48_RS15590 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | low | > 71 |
Dickeya dianthicola ME23 | 0.69 | DZA65_RS06020 | | endopeptidase La | 0.54 | DZA65_RS16665 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | low | > 75 |
Klebsiella michiganensis M5al | 0.69 | BWI76_RS06535 | | endopeptidase La | 0.55 | BWI76_RS21095 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | low | > 92 |
Serratia liquefaciens MT49 | 0.69 | IAI46_05020 | | endopeptidase La | 0.55 | IAI46_19290 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | low | > 86 |
Pectobacterium carotovorum WPP14 | 0.69 | HER17_RS15840 | | endopeptidase La | 0.54 | HER17_RS06085 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | — | — |
Rahnella sp. WP5 | 0.69 | EX31_RS22255 | | endopeptidase La | 0.56 | EX31_RS20525 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | low | > 89 |
Shewanella amazonensis SB2B | 0.69 | Sama_1226 | | endopeptidase La (RefSeq) | 0.53 | Sama_2368 | | hypothetical protein (RefSeq) | low | > 62 |
Enterobacter sp. TBS_079 | 0.68 | MPMX20_01030 | | Lon protease | 0.55 | MPMX20_03395 | | Dual-specificity RNA methyltransferase RlmN | low | > 85 |
Erwinia tracheiphila SCR3 | 0.68 | LU632_RS18335 | lon | endopeptidase La | 0.55 | LU632_RS17815 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | — | — |
Enterobacter asburiae PDN3 | 0.68 | EX28DRAFT_2531 | | endopeptidase La | 0.55 | EX28DRAFT_0126 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase | low | > 76 |
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.68 | GFF4355 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.55 | GFF2414 | | Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) | low | > 78 |
Pantoea sp. MT58 | 0.68 | IAI47_14645 | | endopeptidase La | 0.54 | IAI47_05040 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | — | — |
Escherichia coli BW25113 | 0.68 | b0439 | lon | DNA-binding ATP-dependent protease La (NCBI) | 0.55 | b2517 | yfgB | predicted enzyme (NCBI) | low | > 76 |
Vibrio cholerae E7946 ATCC 55056 | 0.68 | CSW01_09605 | | endopeptidase La | 0.53 | CSW01_03930 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | low | > 62 |
Escherichia coli BL21 | 0.68 | ECD_00391 | | DNA-binding ATP-dependent protease La | 0.55 | ECD_02409 | | dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent | low | > 60 |
Escherichia coli ECOR38 | 0.68 | HEPCGN_06935 | lon_P403L | Lon protease | 0.55 | HEPCGN_20830 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | low | > 85 |
Escherichia coli ECRC62 | 0.68 | BNILDI_22670 | lon_P403L | Lon protease | 0.55 | BNILDI_12160 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | — | — |
Escherichia coli Nissle 1917 | 0.68 | ECOLIN_RS02635 | | endopeptidase La | 0.55 | ECOLIN_RS14300 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | low | > 52 |
Alteromonas macleodii MIT1002 | 0.68 | MIT1002_02757 | | Lon protease | 0.51 | MIT1002_02791 | | Dual-specificity RNA methyltransferase RlmN | low | > 70 |
Escherichia coli ECOR27 | 0.68 | NOLOHH_01255 | lon_P403L | Lon protease | 0.55 | NOLOHH_13360 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | low | > 57 |
Escherichia coli HS(pFamp)R (ATCC 700891) | 0.68 | OHPLBJKB_03234 | | Lon protease | 0.55 | OHPLBJKB_01192 | | Dual-specificity RNA methyltransferase RlmN | low | > 73 |
Escherichia coli ECRC101 | 0.68 | MCAODC_27545 | | Lon protease | 0.55 | MCAODC_12240 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | — | — |
Escherichia fergusonii Becca | 0.68 | EFB2_03618 | | Lon protease | 0.55 | EFB2_01373 | | Dual-specificity RNA methyltransferase RlmN | low | > 86 |
Escherichia coli ECRC102 | 0.68 | NIAGMN_06375 | | Lon protease | 0.55 | NIAGMN_19480 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | — | — |
Escherichia coli ECRC99 | 0.68 | KEDOAH_19645 | | Lon protease | 0.55 | KEDOAH_06510 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | — | — |
Escherichia coli ECRC98 | 0.68 | JDDGAC_11975 | | Lon protease | 0.55 | JDDGAC_25385 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | — | — |
Escherichia coli ECRC101 | 0.68 | OKFHMN_08320 | | Lon protease | 0.55 | OKFHMN_21710 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | — | — |
Ralstonia sp. UNC404CL21Col | 0.68 | ABZR87_RS12785 | | endopeptidase La | 0.56 | ABZR87_RS10900 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | low | > 80 |
Ralstonia solanacearum UW163 | 0.67 | UW163_RS14650 | | endopeptidase La | 0.55 | UW163_RS12725 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | — | — |
Ralstonia solanacearum IBSBF1503 | 0.67 | RALBFv3_RS01340 | | endopeptidase La | 0.55 | RALBFv3_RS15260 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | — | — |
Ralstonia solanacearum PSI07 | 0.67 | RPSI07_RS16135 | | endopeptidase La | 0.56 | RPSI07_RS18115 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | — | — |
Ralstonia solanacearum GMI1000 | 0.67 | RS_RS08655 | | endopeptidase La | 0.56 | RS_RS06070 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | — | — |
Paraburkholderia sabiae LMG 24235 | 0.67 | QEN71_RS21975 | | endopeptidase La | 0.54 | QEN71_RS05965 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.69 | 44 |
Kangiella aquimarina DSM 16071 | 0.66 | B158DRAFT_1038 | | ATP-dependent protease La | 0.56 | B158DRAFT_1149 | | 23S rRNA m2A2503 methyltransferase | low | > 40 |
Lysobacter sp. OAE881 | 0.66 | ABIE51_RS14145 | | endopeptidase La | 0.56 | ABIE51_RS09415 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | low | > 62 |
Dyella japonica UNC79MFTsu3.2 | 0.66 | ABZR86_RS07320 | | endopeptidase La | 0.53 | ABZR86_RS05455 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | low | > 74 |
Rhodanobacter sp. FW510-T8 | 0.66 | OKGIIK_08030 | lon | endopeptidase La | 0.54 | OKGIIK_07140 | rlmN | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | low | > 52 |
Paraburkholderia bryophila 376MFSha3.1 | 0.66 | H281DRAFT_00898 | | ATP-dependent proteinase. Serine peptidase. MEROPS family S16 | 0.53 | H281DRAFT_00514 | | 23S rRNA m(2)A-2503 methyltransferase | — | — |
Rhodanobacter denitrificans MT42 | 0.66 | LRK55_RS16460 | | endopeptidase La | 0.54 | LRK55_RS18065 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | low | > 63 |
Rhodanobacter denitrificans FW104-10B01 | 0.66 | LRK54_RS16735 | | endopeptidase La | 0.54 | LRK54_RS00070 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | low | > 59 |
Burkholderia phytofirmans PsJN | 0.66 | BPHYT_RS09460 | | peptidase | 0.53 | BPHYT_RS12590 | | dual-specificity RNA methyltransferase RlmN | — | — |
Dechlorosoma suillum PS | 0.66 | Dsui_2198 | | ATP-dependent protease La | 0.54 | Dsui_3145 | | 23S rRNA m2A2503 methyltransferase | — | — |
Cupriavidus basilensis FW507-4G11 | 0.66 | RR42_RS09030 | | DNA-binding protein | 0.56 | RR42_RS13155 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | — | — |
Xanthomonas campestris pv. campestris strain 8004 | 0.66 | Xcc-8004.4046.1 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.54 | Xcc-8004.2737.1 | | Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) | low | > 74 |
Herbaspirillum seropedicae SmR1 | 0.65 | HSERO_RS12905 | | peptidase | 0.54 | HSERO_RS14810 | | 50S rRNA methyltransferase | — | — |
Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.65 | GFF4044 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.50 | GFF4866 | | Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) | 0.70 | 26 |
Castellaniella sp019104865 MT123 | 0.65 | ABCV34_RS05125 | | endopeptidase La | 0.50 | ABCV34_RS02610 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | — | — |
Acidovorax sp. GW101-3H11 | 0.65 | Ac3H11_937 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.52 | Ac3H11_1791 | | Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) | low | > 79 |
Paraburkholderia graminis OAS925 | 0.64 | ABIE53_002117 | | ATP-dependent Lon protease | 0.53 | ABIE53_002744 | | 23S rRNA (adenine2503-C2)-methyltransferase | low | > 113 |
Variovorax sp. OAS795 | 0.64 | ABID97_RS17590 | | endopeptidase La | 0.49 | ABID97_RS14210 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.57 | 58 |
Azospirillum brasilense Sp245 | 0.63 | AZOBR_RS07145 | | peptidase | 0.45 | AZOBR_RS00800 | | 50S rRNA methyltransferase | low | > 97 |
Azospirillum sp. SherDot2 | 0.63 | MPMX19_01545 | | Lon protease | 0.45 | MPMX19_02413 | | Dual-specificity RNA methyltransferase RlmN | low | > 112 |
Variovorax sp. SCN45 | 0.63 | GFF487 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.49 | GFF992 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase @ tRNA (adenine(37)-C(2))-methyltransferase (EC 2.1.1.192) | low | > 127 |
Magnetospirillum magneticum AMB-1 | 0.63 | AMB_RS14035 | | endopeptidase La | 0.41 | AMB_RS05715 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | low | > 64 |
Caulobacter crescentus NA1000 Δfur | 0.61 | CCNA_02037 | | ATP-dependent endopeptidase Lon | 0.43 | CCNA_00133 | | radical SAM family enzyme | — | — |
Caulobacter crescentus NA1000 | 0.61 | CCNA_02037 | | ATP-dependent endopeptidase Lon | 0.43 | CCNA_00133 | | radical SAM family enzyme | low | > 66 |
Rhodopseudomonas palustris CGA009 | 0.61 | TX73_015345 | | endopeptidase La | 0.41 | TX73_002060 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | — | — |
Rhizobium sp. OAE497 | 0.61 | ABIE40_RS07100 | | endopeptidase La | 0.41 | ABIE40_RS18200 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | — | — |
Sinorhizobium meliloti 1021 | 0.61 | SMc01905 | | ATP-dependent protease LA protein | 0.41 | SMc03831 | | hypothetical protein | — | — |
Agrobacterium fabrum C58 | 0.60 | Atu1261 | | ATP-dependent protease LA | 0.42 | Atu2673 | | hypothetical protein | — | — |
Brevundimonas sp. GW460-12-10-14-LB2 | 0.60 | A4249_RS06460 | | endopeptidase La | 0.43 | A4249_RS12865 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | — | — |
Phaeobacter inhibens DSM 17395 | 0.59 | PGA1_c20540 | | ATP-dependent protease La | 0.44 | PGA1_c36240 | | ribosomal RNA large subunit methyltransferase N | — | — |
Bosea sp. OAE506 | 0.59 | ABIE41_RS18050 | | endopeptidase La | 0.40 | ABIE41_RS04880 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | — | — |
Dinoroseobacter shibae DFL-12 | 0.59 | Dshi_1777 | | ATP-dependent protease La (RefSeq) | 0.42 | Dshi_3311 | | radical SAM enzyme, Cfr family (RefSeq) | low | > 64 |
Sphingomonas koreensis DSMZ 15582 | 0.58 | Ga0059261_0102 | | endopeptidase La | 0.39 | Ga0059261_1407 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase | low | > 68 |
Acinetobacter radioresistens SK82 | 0.55 | MPMX26_02299 | | Lon protease | 0.59 | MPMX26_00426 | | Dual-specificity RNA methyltransferase RlmN | low | > 36 |
Desulfovibrio vulgaris Miyazaki F | 0.53 | DvMF_0112 | | ATP-dependent protease La (RefSeq) | 0.33 | DvMF_1431 | | radical SAM enzyme, Cfr family (RefSeq) | low | > 51 |
Desulfovibrio vulgaris Hildenborough JW710 | 0.52 | DVU1337 | lon | ATP-dependent protease La (TIGR) | 0.33 | DVU2904 | | radical SAM enzyme, Cfr family (TIGR) | low | > 55 |
Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.44 | ABZR88_RS15670 | | endopeptidase La | 0.28 | ABZR88_RS00655 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | low | > 71 |
Fusobacterium nucleatum SB010 | 0.43 | HUW76_01065 | | endopeptidase La | 0.29 | HUW76_07445 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | low | > 35 |
Pontibacter actiniarum KMM 6156, DSM 19842 | 0.42 | CA264_00045 | | endopeptidase La | 0.31 | CA264_15910 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | low | > 74 |
Pedobacter sp. GW460-11-11-14-LB5 | 0.42 | CA265_RS14555 | | endopeptidase La | 0.29 | CA265_RS19115 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase | low | > 88 |
Echinicola vietnamensis KMM 6221, DSM 17526 | 0.42 | Echvi_4670 | | ATP-dependent protease La | 0.31 | Echvi_0755 | | 23S rRNA m2A2503 methyltransferase | 0.27 | 41 |
Bacteroides stercoris CC31F | 0.41 | HMPREF1181_RS14340 | | endopeptidase La | 0.31 | HMPREF1181_RS05775 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | low | > 56 |
Bacteroides ovatus ATCC 8483 | 0.40 | BACOVA_02571 | | endopeptidase La | 0.31 | BACOVA_05204 | | 23S rRNA m2A2503 methyltransferase | low | > 94 |
Phocaeicola vulgatus CL09T03C04 | 0.40 | HMPREF1058_RS01210 | | endopeptidase La | 0.30 | HMPREF1058_RS17025 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | low | > 67 |
Phocaeicola dorei CL03T12C01 | 0.40 | ABI39_RS16520 | | endopeptidase La | 0.31 | ABI39_RS12945 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.51 | 16 |
Parabacteroides merdae CL09T00C40 | 0.39 | HMPREF1078_RS16185 | | endopeptidase La | 0.29 | HMPREF1078_RS14530 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | low | > 61 |
Not shown: 1 genomes with orthologs for Psest_2285 only; 3 genomes with orthologs for Psest_1259 only