| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BL21 | 1.0 | ECD_03941 | | acetyl-CoA synthetase | 1.0 | ECD_03067 | | RNA polymerase, sigma 54 (sigma N) factor | low | > 61 |
| Escherichia coli ECRC62 | 1.00 | BNILDI_06445 | acs | acetate--CoA ligase | 1.00 | BNILDI_01795 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECOR27 | 1.00 | NOLOHH_05080 | acs | acetate--CoA ligase | 1.00 | NOLOHH_09740 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli BW25113 | 1.00 | b4069 | acs | acetyl-coenzyme A synthetase (NCBI) | 1.00 | b3202 | rpoN | DNA-directed RNA polymerase subunit N (NCBI) | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_03971 | | Acetyl-coenzyme A synthetase | 1.00 | OHPLBJKB_00498 | | RNA polymerase sigma-54 factor | — | — |
| Escherichia coli ECOR38 | 1.00 | HEPCGN_11455 | acs | acetate--CoA ligase | 1.00 | HEPCGN_16815 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECRC102 | 0.99 | NIAGMN_10675 | acs | acetate--CoA ligase | 1.00 | NIAGMN_15700 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECRC99 | 0.99 | KEDOAH_15320 | acs | acetate--CoA ligase | 1.00 | KEDOAH_10210 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECRC100 | 0.99 | OKFHMN_12830 | acs | acetate--CoA ligase | 1.00 | OKFHMN_17940 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECRC98 | 0.99 | JDDGAC_16465 | acs | acetate--CoA ligase | 1.00 | JDDGAC_21565 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECRC101 | 0.99 | MCAODC_03340 | acs | acetate--CoA ligase | 1.00 | MCAODC_08460 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia fergusonii Becca | 0.99 | EFB2_04520 | | Acetyl-coenzyme A synthetase | 1.00 | EFB2_00621 | | RNA polymerase sigma-54 factor | — | — |
| Escherichia coli Nissle 1917 | 0.99 | ECOLIN_RS23550 | | acetate--CoA ligase | 1.00 | ECOLIN_RS18425 | | RNA polymerase factor sigma-54 | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.96 | GFF1452 | | Acetyl-coenzyme A synthetase (EC 6.2.1.1) | 0.95 | GFF2946 | | RNA polymerase sigma-54 factor RpoN | low | > 78 |
| Enterobacter asburiae PDN3 | 0.95 | EX28DRAFT_4232 | | acetate--CoA ligase | 0.93 | EX28DRAFT_3256 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | — | — |
| Enterobacter sp. TBS_079 | 0.94 | MPMX20_00291 | | Acetyl-coenzyme A synthetase | 0.90 | MPMX20_04108 | | RNA polymerase sigma-54 factor | — | — |
| Klebsiella michiganensis M5al | 0.94 | BWI76_RS02095 | | acetyl-coenzyme A synthetase | 0.90 | BWI76_RS25265 | | RNA polymerase factor sigma-54 | — | — |
| Rahnella sp. WP5 | 0.87 | EX31_RS09040 | | acetate--CoA ligase | 0.86 | EX31_RS12400 | | RNA polymerase factor sigma-54 | low | > 89 |
| Pantoea sp. MT58 | 0.87 | IAI47_17715 | | acetate--CoA ligase | 0.87 | IAI47_17185 | | RNA polymerase factor sigma-54 | low | > 76 |
| Erwinia tracheiphila SCR3 | 0.86 | LU632_RS23305 | acs | acetate--CoA ligase | 0.86 | LU632_RS21280 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Pectobacterium carotovorum WPP14 | 0.86 | HER17_RS17630 | | acetate--CoA ligase | 0.85 | HER17_RS20060 | | RNA polymerase factor sigma-54 | low | > 75 |
| Serratia liquefaciens MT49 | 0.86 | IAI46_01405 | | acetate--CoA ligase | 0.86 | IAI46_22470 | | RNA polymerase factor sigma-54 | — | — |
| Dickeya dadantii 3937 | 0.85 | DDA3937_RS03480 | | acetate--CoA ligase | 0.85 | DDA3937_RS01530 | | RNA polymerase factor sigma-54 | low | > 74 |
| Dickeya dianthicola 67-19 | 0.85 | HGI48_RS03580 | | acetate--CoA ligase | 0.85 | HGI48_RS01445 | | RNA polymerase factor sigma-54 | low | > 71 |
| Dickeya dianthicola ME23 | 0.85 | DZA65_RS03695 | | acetate--CoA ligase | 0.85 | DZA65_RS01510 | | RNA polymerase factor sigma-54 | low | > 75 |
| Vibrio cholerae E7946 ATCC 55056 | 0.77 | CSW01_01520 | | acetyl-coenzyme A synthetase | 0.64 | CSW01_12815 | | RNA polymerase sigma-54 factor | low | > 62 |
| Shewanella sp. ANA-3 | 0.73 | Shewana3_2523 | | acetyl-CoA synthetase (RefSeq) | 0.60 | Shewana3_0672 | | RNA polymerase factor sigma-54 (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.72 | SO2743 | acs | acetyl-coenzyme A synthetase (NCBI ptt file) | 0.60 | SO3961 | rpoN | RNA polymerase sigma-54 factor (NCBI ptt file) | low | > 76 |
| Marinobacter adhaerens HP15 | 0.72 | HP15_811 | | acetyl-CoA synthetase | 0.57 | HP15_2442 | | RNA polymerase, sigma 54 subunit, RpoN | low | > 73 |
| Shewanella amazonensis SB2B | 0.71 | Sama_2079 | | acetyl-CoA synthetase (RefSeq) | 0.62 | Sama_3088 | | RNA polymerase factor sigma-54 (RefSeq) | low | > 62 |
| Pseudomonas putida KT2440 | 0.71 | PP_4487 | | acetyl-CoA synthetase | 0.55 | PP_0952 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas sp. S08-1 | 0.71 | OH686_21250 | | acetate--CoA ligase | 0.55 | OH686_08540 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas sp. RS175 | 0.71 | PFR28_03289 | | Acetyl-coenzyme A synthetase | 0.54 | PFR28_00173 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.71 | Pf6N2E2_5659 | | Acetyl-coenzyme A synthetase (EC 6.2.1.1) | 0.55 | Pf6N2E2_3267 | | RNA polymerase sigma-54 factor RpoN | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.71 | AO356_18695 | | Acetyl-coenzyme A synthetase (EC 6.2.1.1) (from data) | 0.55 | AO356_07035 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas simiae WCS417 | 0.70 | PS417_21750 | | acetyl-CoA synthetase | 0.54 | PS417_04345 | | RNA polymerase factor sigma-54 | — | — |
| Pseudomonas fluorescens SBW25 | 0.70 | PFLU_RS23355 | | acetate--CoA ligase | 0.55 | PFLU_RS04400 | | RNA polymerase factor sigma-54 | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.70 | PFLU_RS23355 | | acetate--CoA ligase | 0.55 | PFLU_RS04400 | | RNA polymerase factor sigma-54 | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.70 | Psyr_3572 | | acetyl-coenzyme A synthetase | 0.54 | Psyr_4147 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.70 | Psyr_3572 | | acetyl-coenzyme A synthetase | 0.54 | Psyr_4147 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.70 | Pf1N1B4_3430 | | Acetyl-coenzyme A synthetase (EC 6.2.1.1) | 0.54 | Pf1N1B4_1080 | | RNA polymerase sigma-54 factor RpoN | — | — |
| Shewanella loihica PV-4 | 0.70 | Shew_1533 | | acetyl-CoA synthetase (RefSeq) | 0.60 | Shew_3311 | | RNA polymerase factor sigma-54 (RefSeq) | low | > 60 |
| Pseudomonas fluorescens GW456-L13 | 0.70 | PfGW456L13_1963 | | Acetyl-coenzyme A synthetase (EC 6.2.1.1) | 0.54 | PfGW456L13_5014 | | RNA polymerase sigma-54 factor RpoN | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.70 | AO353_03060 | | Acetyl-coenzyme A synthetase (EC 6.2.1.1) (from data) | 0.55 | AO353_05180 | | RNA polymerase sigma-54 factor | — | — |
| Magnetospirillum magneticum AMB-1 | 0.69 | AMB_RS21140 | | acetate--CoA ligase | 0.32 | AMB_RS19925 | | RNA polymerase sigma-54 factor | — | — |
| Azospirillum brasilense Sp245 | 0.67 | AZOBR_RS00270 | | acetyl-CoA synthetase | 0.32 | AZOBR_RS18870 | | RNA polymerase sigma54 factor | low | > 97 |
| Bosea sp. OAE506 | 0.67 | ABIE41_RS05675 | | acetate--CoA ligase | 0.35 | ABIE41_RS00125 | | RNA polymerase factor sigma-54 | low | > 77 |
| Alteromonas macleodii MIT1002 | 0.67 | MIT1002_03516 | | Acetyl-coenzyme A synthetase | 0.65 | MIT1002_00827 | | RNA polymerase sigma-54 factor 2 | low | > 70 |
| Rhodospirillum rubrum S1H | 0.66 | Rru_A3575 | | Acetate--CoA ligase (NCBI) | 0.35 | Rru_A0010 | | Sigma-54 (RpoN) (NCBI) | low | > 58 |
| Dyella japonica UNC79MFTsu3.2 | 0.65 | ABZR86_RS15200 | | acetate--CoA ligase | 0.41 | ABZR86_RS19815 | | RNA polymerase factor sigma-54 | low | > 74 |
| Azospirillum sp. SherDot2 | 0.65 | MPMX19_02038 | | Acetyl-coenzyme A synthetase | 0.30 | MPMX19_02668 | | RNA polymerase sigma-54 factor 2 | low | > 112 |
| Acinetobacter radioresistens SK82 | 0.65 | MPMX26_02906 | | Acetyl-coenzyme A synthetase | 0.40 | MPMX26_02592 | | RNA polymerase sigma-54 factor | low | > 36 |
| Rhodanobacter denitrificans FW104-10B01 | 0.65 | LRK54_RS08420 | | acetate--CoA ligase | 0.41 | LRK54_RS12875 | | RNA polymerase factor sigma-54 | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.65 | LRK55_RS08185 | | acetate--CoA ligase | 0.41 | LRK55_RS12575 | | RNA polymerase factor sigma-54 | low | > 63 |
| Pseudomonas stutzeri RCH2 | 0.64 | Psest_2657 | | acetate--CoA ligase | 0.56 | Psest_3313 | | RNA polymerase sigma-54 factor | — | — |
| Rhizobium sp. OAE497 | 0.64 | ABIE40_RS19160 | | acetate--CoA ligase | 0.30 | ABIE40_RS01860 | | RNA polymerase factor sigma-54 | low | > 107 |
| Sinorhizobium meliloti 1021 | 0.64 | SMc04093 | | acetyl-CoA synthetase | 0.30 | SMc01139 | | RNA polymerase factor sigma-54 | low | > 103 |
| Agrobacterium fabrum C58 | 0.64 | Atu2745 | | acetyl-coenzyme A synthetase | 0.30 | Atu0332 | | RNA polymerase sigma-54 factor | low | > 89 |
| Rhodanobacter sp. FW510-T8 | 0.63 | OKGIIK_15190 | acs | acetate--CoA ligase | 0.40 | OKGIIK_02265 | | RNA polymerase factor sigma-54 | low | > 52 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.63 | Xcc-8004.5157.1 | | Acetyl-coenzyme A synthetase (EC 6.2.1.1) | 0.39 | Xcc-8004.1662.1 | | RNA polymerase sigma-54 factor RpoN | low | > 74 |
| Lysobacter sp. OAE881 | 0.63 | ABIE51_RS01660 | | acetate--CoA ligase | 0.39 | ABIE51_RS15955 | | RNA polymerase factor sigma-54 | low | > 62 |
| Dinoroseobacter shibae DFL-12 | 0.62 | Dshi_1399 | | acetate--CoA ligase (RefSeq) | 0.15 | Dshi_3584 | | RNA polymerase, sigma 54 subunit, RpoN (RefSeq) | — | — |
| Kangiella aquimarina DSM 16071 | 0.62 | B158DRAFT_0063 | | acetate--CoA ligase | 0.36 | B158DRAFT_2080 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | low | > 40 |
| Sphingomonas koreensis DSMZ 15582 | 0.62 | Ga0059261_1313 | | acetyl-coenzyme A synthetase (EC 6.2.1.1) | 0.30 | Ga0059261_2543 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | low | > 68 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.62 | A4249_RS15190 | | acetate--CoA ligase | 0.29 | A4249_RS16075 | | RNA polymerase factor sigma-54 | low | > 48 |
| Caulobacter crescentus NA1000 | 0.60 | CCNA_03696 | | acetyl-coenzyme A synthetase | 0.33 | CCNA_03713 | | RNA polymerase sigma-54 factor rpoN | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.60 | CCNA_03696 | | acetyl-coenzyme A synthetase | 0.33 | CCNA_03713 | | RNA polymerase sigma-54 factor rpoN | low | > 67 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.55 | DVU2969 | | acetoacetyl-CoA synthase (TIGR) | 0.35 | DVU1628 | rpoN | RNA polymerase sigma-54 factor (TIGR) | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.55 | DvMF_1775 | | acetate/CoA ligase (RefSeq) | 0.34 | DvMF_0427 | | RNA polymerase, sigma 54 subunit, RpoN (RefSeq) | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.54 | CA265_RS16340 | | acetate--CoA ligase | 0.27 | CA265_RS11005 | | RNA polymerase sigma-54 factor | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.52 | Echvi_1268 | | acetate--CoA ligase | 0.28 | Echvi_0071 | | RNA polymerase sigma-54 factor | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.52 | ABZR88_RS15400 | | acetate--CoA ligase | 0.26 | ABZR88_RS14570 | | RNA polymerase factor sigma-54 | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.48 | RR42_RS13880 | | AMP-dependent synthetase | 0.41 | RR42_RS02085 | | RNA polymerase subunit sigma-54 | low | > 128 |
| Castellaniella sp019104865 MT123 | 0.48 | ABCV34_RS00680 | | acetate--CoA ligase | 0.28 | ABCV34_RS12430 | | RNA polymerase factor sigma-54 | low | > 48 |
| Paraburkholderia sabiae LMG 24235 | 0.48 | QEN71_RS23765 | | acetate--CoA ligase | 0.42 | QEN71_RS01755 | | RNA polymerase factor sigma-54 | low | > 153 |
| Ralstonia sp. UNC404CL21Col | 0.48 | ABZR87_RS14360 | | acetate--CoA ligase | 0.43 | ABZR87_RS07060 | | RNA polymerase factor sigma-54 | low | > 80 |
| Herbaspirillum seropedicae SmR1 | 0.47 | HSERO_RS07770 | | acetyl-CoA synthetase | 0.41 | HSERO_RS19855 | | RNA polymerase subunit sigma-54 | — | — |
| Burkholderia phytofirmans PsJN | 0.47 | BPHYT_RS07000 | | acetyl-CoA synthetase | 0.42 | BPHYT_RS02905 | | RNA polymerase subunit sigma-54 | low | > 109 |
| Ralstonia solanacearum GMI1000 | 0.47 | RS_RS09815 | | acetyl-coenzyme A synthetase | 0.42 | RS_RS02020 | | RNA polymerase sigma-54 factor | low | > 80 |
| Paraburkholderia graminis OAS925 | 0.47 | ABIE53_001664 | | acetyl-CoA synthetase | 0.41 | ABIE53_000718 | | RNA polymerase sigma-54 factor | low | > 113 |
| Dechlorosoma suillum PS | 0.47 | Dsui_2003 | | acetate--CoA ligase | 0.41 | Dsui_0704 | | RNA polymerase sigma-54 factor | low | > 51 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.47 | H281DRAFT_04953 | | acetyl-coenzyme A synthetase | 0.41 | H281DRAFT_01927 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | low | > 103 |
| Ralstonia solanacearum PSI07 | 0.47 | RPSI07_RS14880 | | acetate--CoA ligase | 0.42 | RPSI07_RS22130 | | RNA polymerase factor sigma-54 | low | > 81 |
| Ralstonia solanacearum IBSBF1503 | 0.47 | RALBFv3_RS02445 | | acetate--CoA ligase | 0.42 | RALBFv3_RS11170 | | RNA polymerase sigma-54 factor | low | > 76 |
| Variovorax sp. OAS795 | 0.47 | ABID97_RS27430 | | acetate--CoA ligase | 0.34 | ABID97_RS04780 | | RNA polymerase factor sigma-54 | — | — |
| Ralstonia solanacearum UW163 | 0.47 | UW163_RS11280 | | acetate--CoA ligase | 0.42 | UW163_RS02410 | | RNA polymerase sigma-54 factor | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.46 | GFF4107 | | Acetyl-coenzyme A synthetase (EC 6.2.1.1) | 0.35 | GFF3068 | | RNA polymerase sigma-54 factor RpoN | 0.81 | 11 |
| Acidovorax sp. GW101-3H11 | 0.46 | Ac3H11_951 | | Acetyl-coenzyme A synthetase (EC 6.2.1.1) | 0.36 | Ac3H11_727 | | RNA polymerase sigma-54 factor RpoN | low | > 79 |
| Variovorax sp. SCN45 | 0.46 | GFF475 | | Acetyl-CoA synthetase (EC 6.2.1.1) | 0.33 | GFF6290 | | RNA polymerase sigma-54 factor RpoN | low | > 127 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.16 | BT3755 | | acetyl-coenzyme A synthetase (NCBI ptt file) | 0.21 | BT2521 | | RNA polymerase sigma-54 (NCBI ptt file) | — | — |
| Bacteroides ovatus ATCC 8483 | 0.15 | BACOVA_03585 | | AMP-binding enzyme | 0.20 | BACOVA_01616 | | RNA polymerase sigma-54 factor | — | — |
| Parabacteroides merdae CL09T00C40 | 0.15 | HMPREF1078_RS10645 | | AMP-binding protein | 0.26 | HMPREF1078_RS05920 | | RNA polymerase factor sigma-54 | low | > 61 |
| Phocaeicola vulgatus CL09T03C04 | 0.14 | HMPREF1058_RS08765 | | AMP-binding protein | 0.20 | HMPREF1058_RS12505 | | RNA polymerase factor sigma-54 | low | > 67 |
| Bacteroides stercoris CC31F | 0.14 | HMPREF1181_RS03430 | | AMP-binding protein | 0.21 | HMPREF1181_RS00925 | | RNA polymerase factor sigma-54 | — | — |
Not shown: 6 genomes with orthologs for ECD_03941 only; 2 genomes with orthologs for ECD_03067 only