Conservation of cofitness between CSW01_12100 and CSW01_15330 in Vibrio cholerae E7946 ATCC 55056

101 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_12100 carbamoyl-phosphate synthase large chain 1.0 CSW01_15330 glycine dehydrogenase (decarboxylating) 0.74 9
Klebsiella michiganensis M5al 0.87 BWI76_RS04470 carbamoyl phosphate synthase large subunit 0.59 BWI76_RS23870 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) low > 92
Klebsiella pneumoniae MKP103 0.87 KDGMDA_12710 carbamoyl-phosphate synthase large subunit 0.59 KDGMDA_04370 aminomethyl-transferring glycine dehydrogenase low > 95
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.87 GFF213 Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) 0.59 GFF3003 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) 0.48 20
Shewanella loihica PV-4 0.87 Shew_2838 carB carbamoyl phosphate synthase large subunit (RefSeq) 0.59 Shew_3062 glycine dehydrogenase (RefSeq) low > 60
Escherichia coli ECOR27 0.87 NOLOHH_03270 carB carbamoyl-phosphate synthase large subunit 0.59 NOLOHH_11445 gcvP aminomethyl-transferring glycine dehydrogenase low > 76
Escherichia coli BL21 0.87 ECD_00037 carbamoyl-phosphate synthase large subunit 0.59 ECD_02735 glycine decarboxylase, PLP-dependent, subunit P of glycine cleavage complex low > 61
Enterobacter asburiae PDN3 0.87 EX28DRAFT_3638 carbamoyl-phosphate synthase, large subunit 0.59 EX28DRAFT_2955 glycine dehydrogenase (decarboxylating)
Escherichia coli ECRC62 0.87 BNILDI_08330 carB carbamoyl-phosphate synthase large subunit 0.59 BNILDI_09980 gcvP aminomethyl-transferring glycine dehydrogenase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.87 OHPLBJKB_03624 Carbamoyl-phosphate synthase large chain 0.59 OHPLBJKB_00812 Glycine dehydrogenase (decarboxylating) low > 74
Escherichia fergusonii Becca 0.87 EFB2_04012 Carbamoyl-phosphate synthase large chain 0.59 EFB2_00999 Glycine dehydrogenase (decarboxylating) low > 86
Escherichia coli BW25113 0.87 b0033 carB carbamoyl-phosphate synthase large subunit (NCBI) 0.59 b2903 gcvP glycine dehydrogenase (NCBI) low > 76
Escherichia coli ECOR38 0.87 HEPCGN_08925 carB carbamoyl-phosphate synthase large subunit 0.59 HEPCGN_18820 gcvP aminomethyl-transferring glycine dehydrogenase low > 88
Escherichia coli ECRC102 0.87 NIAGMN_08790 carB carbamoyl-phosphate synthase large subunit 0.59 NIAGMN_17295 gcvP aminomethyl-transferring glycine dehydrogenase low > 80
Escherichia coli ECRC98 0.87 JDDGAC_14535 carB carbamoyl-phosphate synthase large subunit 0.59 JDDGAC_23170 gcvP aminomethyl-transferring glycine dehydrogenase low > 87
Escherichia coli ECRC101 0.87 MCAODC_01455 carB carbamoyl-phosphate synthase large subunit 0.59 MCAODC_10050 gcvP aminomethyl-transferring glycine dehydrogenase low > 87
Escherichia coli Nissle 1917 0.87 ECOLIN_RS00180 carbamoyl-phosphate synthase large subunit 0.59 ECOLIN_RS16165 aminomethyl-transferring glycine dehydrogenase low > 55
Escherichia coli ECRC99 0.87 KEDOAH_17215 carB carbamoyl-phosphate synthase large subunit 0.59 KEDOAH_08610 gcvP aminomethyl-transferring glycine dehydrogenase
Shewanella amazonensis SB2B 0.87 Sama_2503 carB carbamoyl phosphate synthase large subunit (RefSeq) 0.58 Sama_2719 glycine dehydrogenase (RefSeq) low > 62
Escherichia coli ECRC100 0.87 OKFHMN_10940 carB carbamoyl-phosphate synthase large subunit 0.59 OKFHMN_19530 gcvP aminomethyl-transferring glycine dehydrogenase low > 79
Enterobacter sp. TBS_079 0.87 MPMX20_00740 Carbamoyl-phosphate synthase large chain 0.59 MPMX20_03762 Glycine dehydrogenase (decarboxylating) low > 85
Pectobacterium carotovorum WPP14 0.87 HER17_RS02900 carbamoyl-phosphate synthase large subunit 0.58 HER17_RS17995 aminomethyl-transferring glycine dehydrogenase low > 75
Shewanella sp. ANA-3 0.86 Shewana3_0968 carB carbamoyl phosphate synthase large subunit (RefSeq) 0.58 Shewana3_3499 glycine dehydrogenase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.86 SO1142 carB carbamoyl-phosphate synthase, large subunit (NCBI ptt file) 0.58 SO0781 gcvP glycine cleavage system P protein (NCBI ptt file) low > 76
Rahnella sp. WP5 0.86 EX31_RS03830 carbamoyl-phosphate synthase large subunit 0.58 EX31_RS21520 aminomethyl-transferring glycine dehydrogenase low > 89
Dickeya dadantii 3937 0.86 DDA3937_RS18305 carbamoyl-phosphate synthase large subunit 0.58 DDA3937_RS03255 aminomethyl-transferring glycine dehydrogenase low > 74
Dickeya dianthicola ME23 0.86 DZA65_RS19380 carbamoyl-phosphate synthase large subunit 0.58 DZA65_RS03445 aminomethyl-transferring glycine dehydrogenase low > 75
Dickeya dianthicola 67-19 0.86 HGI48_RS18240 carbamoyl-phosphate synthase large subunit 0.58 HGI48_RS03400 aminomethyl-transferring glycine dehydrogenase low > 71
Pantoea sp. MT58 0.86 IAI47_16115 carbamoyl-phosphate synthase large subunit 0.59 IAI47_03775 aminomethyl-transferring glycine dehydrogenase low > 76
Pantoea agglomerans CFBP13505 P0401 0.85 PagCFBP13505_RS12880 carbamoyl-phosphate synthase large subunit 0.59 PagCFBP13505_RS15925 aminomethyl-transferring glycine dehydrogenase low > 74
Serratia liquefaciens MT49 0.85 IAI46_03195 carbamoyl-phosphate synthase large subunit 0.58 IAI46_20850 aminomethyl-transferring glycine dehydrogenase low > 87
Erwinia tracheiphila HP pepo 2.2 0.85 IJEDHG_06145 carB carbamoyl-phosphate synthase large subunit 0.58 IJEDHG_03250 gcvP aminomethyl-transferring glycine dehydrogenase low > 61
Erwinia tracheiphila SCR3 0.85 LU632_RS02750 carB carbamoyl-phosphate synthase large subunit 0.58 LU632_RS05915 gcvP aminomethyl-transferring glycine dehydrogenase low > 73
Erwinia amylovora T8 0.84 OLJFJH_01395 carbamoyl-phosphate synthase large subunit 0.59 OLJFJH_08785 aminomethyl-transferring glycine dehydrogenase low > 58
Alteromonas macleodii MIT1002 0.81 MIT1002_01467 Carbamoyl-phosphate synthase large chain 0.63 MIT1002_02971 Glycine dehydrogenase [decarboxylating] low > 70
Pseudomonas aeruginosa PA14 0.76 IKLFDK_29815 carbamoyl-phosphate synthase large subunit 0.57 IKLFDK_27405 aminomethyl-transferring glycine dehydrogenase low > 98
Pseudomonas aeruginosa PUPa3 0.76 DQ20_RS52500 carB;go_function=ATP carbamoyl-phosphate synthase large subunit 0.57 DQ20_RS50180 gcvP;go_function=glycine aminomethyl-transferring glycine dehydrogenase low > 101
Pseudomonas lactucae CFBP13502 0.76 GEMAOFIL_04958 Carbamoyl-phosphate synthase large chain 0.57 GEMAOFIL_04608 Glycine dehydrogenase (decarboxylating)
Pseudomonas simiae WCS417 0.76 PS417_24040 carbamoyl phosphate synthase large subunit 0.57 PS417_22360 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data)
Pseudomonas fluorescens FW300-N1B4 0.76 Pf1N1B4_1172 Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) 0.59 Pf1N1B4_2236 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Pseudomonas fluorescens GW456-L13 0.76 PfGW456L13_5099 Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) 0.58 PfGW456L13_904 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Pseudomonas aeruginosa MRSN321 0.76 DY961_RS09535 carB;go_function=ATP carbamoyl-phosphate synthase large subunit 0.57 DY961_RS11935 gcvP;go_function=glycine aminomethyl-transferring glycine dehydrogenase low > 100
Pseudomonas sp. DMC3 0.76 GFF4977 Carbamoyl-phosphate synthase large chain 0.58 GFF308 Glycine dehydrogenase (decarboxylating)
Pseudomonas fluorescens FW300-N2E3 0.76 AO353_05630 carbamoyl phosphate synthase large subunit 0.58 AO353_08720 glycine dehydrogenase
Pseudomonas sp. RS175 0.76 PFR28_00077 Carbamoyl-phosphate synthase large chain 0.56 PFR28_03383 Glycine dehydrogenase (decarboxylating)
Pseudomonas fluorescens SBW25-INTG 0.76 PFLU_RS25880 carbamoyl-phosphate synthase large subunit 0.57 PFLU_RS24000 aminomethyl-transferring glycine dehydrogenase
Pseudomonas fluorescens SBW25 0.76 PFLU_RS25880 carbamoyl-phosphate synthase large subunit 0.57 PFLU_RS24000 aminomethyl-transferring glycine dehydrogenase
Pseudomonas syringae pv. syringae B728a 0.76 Psyr_4191 carbamoyl-phosphate synthase large subunit 0.56 Psyr_1096 glycine dehydrogenase (decarboxylating) alpha subunit / glycine dehydrogenase (decarboxylating) beta subunit
Pseudomonas syringae pv. syringae B728a ΔmexB 0.76 Psyr_4191 carbamoyl-phosphate synthase large subunit 0.56 Psyr_1096 glycine dehydrogenase (decarboxylating) alpha subunit / glycine dehydrogenase (decarboxylating) beta subunit
Pseudomonas orientalis W4I3 0.76 QF045_RS26295 carbamoyl-phosphate synthase large subunit 0.57 QF045_RS24485 aminomethyl-transferring glycine dehydrogenase
Pseudomonas sp. S08-1 0.75 OH686_17080 Carbamoyl-phosphate synthase large chain 0.60 OH686_11165 glycine dehydrogenase
Pseudomonas putida KT2440 0.75 PP_4723 Carbamoyl-phosphate synthase large chain 0.58 PP_5192 glycine dehydrogenase low > 96
Pseudomonas fluorescens FW300-N2E2 0.75 Pf6N2E2_3364 Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) 0.56 Pf6N2E2_5558 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data)
Pseudomonas stutzeri RCH2 0.75 Psest_0968 carbamoyl-phosphate synthase, large subunit 0.60 Psest_0183 glycine dehydrogenase (decarboxylating)
Pseudomonas fluorescens FW300-N2C3 0.75 AO356_07480 carbamoyl phosphate synthase large subunit 0.56 AO356_18170 glycine dehydrogenase low > 104
Pseudomonas sp. BP01 0.75 JOY50_RS26765 carB carbamoyl-phosphate synthase large subunit 0.59 JOY50_RS22405 gcvP aminomethyl-transferring glycine dehydrogenase
Pseudomonas segetis P6 0.75 MPMX49_01187 Carbamoyl-phosphate synthase large chain 0.59 MPMX49_04479 Glycine dehydrogenase (decarboxylating)
Pseudomonas sp. SVBP6 0.75 COO64_RS15240 carB carbamoyl-phosphate synthase large subunit 0.58 COO64_RS00950 gcvP aminomethyl-transferring glycine dehydrogenase low > 93
Kangiella aquimarina DSM 16071 0.73 B158DRAFT_0616 carbamoyl-phosphate synthase, large subunit 0.59 B158DRAFT_0545 glycine dehydrogenase (decarboxylating)
Rhodanobacter denitrificans FW104-10B01 0.69 LRK54_RS18000 carbamoyl-phosphate synthase large subunit 0.56 LRK54_RS00520 aminomethyl-transferring glycine dehydrogenase
Lysobacter sp. OAE881 0.69 ABIE51_RS11615 carbamoyl-phosphate synthase large subunit 0.55 ABIE51_RS14345 aminomethyl-transferring glycine dehydrogenase 0.74 14
Rhodanobacter denitrificans MT42 0.69 LRK55_RS17855 carbamoyl-phosphate synthase large subunit 0.56 LRK55_RS00260 aminomethyl-transferring glycine dehydrogenase
Dyella japonica UNC79MFTsu3.2 0.69 ABZR86_RS05600 carbamoyl-phosphate synthase large subunit 0.57 ABZR86_RS08305 aminomethyl-transferring glycine dehydrogenase
Rhodanobacter sp. FW510-T8 0.69 OKGIIK_07295 carB carbamoyl-phosphate synthase large subunit 0.55 OKGIIK_06740 gcvP2 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain low > 53
Rhodanobacter sp000427505 FW510-R12 0.69 LRK53_RS11360 carbamoyl-phosphate synthase large subunit 0.54 LRK53_RS09610 aminomethyl-transferring glycine dehydrogenase
Xanthomonas campestris pv. campestris strain 8004 0.69 Xcc-8004.2912.1 Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) 0.55 Xcc-8004.3878.1 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Dechlorosoma suillum PS 0.68 Dsui_3064 carbamoyl-phosphate synthase, large subunit 0.60 Dsui_2737 glycine dehydrogenase, decarboxylating
Acidovorax sp. GW101-3H11 0.67 Ac3H11_436 Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) 0.54 Ac3H11_167 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Ralstonia solanacearum PSI07 0.67 RPSI07_RS15255 carbamoyl-phosphate synthase large subunit 0.57 RPSI07_RS08575 glycine dehydrogenase (aminomethyl-transferring)
Ralstonia sp. UNC404CL21Col 0.67 ABZR87_RS14140 carbamoyl-phosphate synthase large subunit 0.56 ABZR87_RS03935 aminomethyl-transferring glycine dehydrogenase
Ralstonia solanacearum IBSBF1503 0.67 RALBFv3_RS02190 carbamoyl-phosphate synthase large subunit 0.57 RALBFv3_RS08660 glycine dehydrogenase (aminomethyl-transferring)
Ralstonia solanacearum UW163 0.67 UW163_RS15500 carbamoyl-phosphate synthase large subunit 0.57 UW163_RS04950 glycine dehydrogenase (aminomethyl-transferring)
Paraburkholderia graminis OAS925 0.66 ABIE53_003004 carbamoyl-phosphate synthase large subunit 0.58 ABIE53_000238 glycine dehydrogenase
Burkholderia phytofirmans PsJN 0.66 BPHYT_RS14190 carbamoyl phosphate synthase large subunit 0.58 BPHYT_RS19330 glycine cleavage system P protein (EC 1.4.4.2) (from data) low > 109
Paraburkholderia bryophila 376MFSha3.1 0.66 H281DRAFT_04403 carbamoyl-phosphate synthase large subunit 0.58 H281DRAFT_02409 glycine dehydrogenase
Variovorax sp. OAS795 0.66 ABID97_RS17080 carbamoyl-phosphate synthase large subunit 0.56 ABID97_RS19655 aminomethyl-transferring glycine dehydrogenase
Cupriavidus basilensis FW507-4G11 0.66 RR42_RS13510 carbamoyl phosphate synthase large subunit 0.56 RR42_RS20070 glycine dehydrogenase
Castellaniella sp019104865 MT123 0.66 ABCV34_RS15510 carbamoyl-phosphate synthase large subunit 0.54 ABCV34_RS08835 aminomethyl-transferring glycine dehydrogenase
Ralstonia solanacearum GMI1000 0.66 RS_RS07630 carbamoyl-phosphate synthase large chain 0.56 RS_RS16510 glycine dehydrogenase
Paraburkholderia sabiae LMG 24235 0.66 QEN71_RS04780 carbamoyl-phosphate synthase large subunit 0.57 QEN71_RS29215 aminomethyl-transferring glycine dehydrogenase
Variovorax sp. SCN45 0.66 GFF376 Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) 0.56 GFF6478 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Hydrogenophaga sp. GW460-11-11-14-LB1 0.66 GFF4898 Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) 0.54 GFF5215 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Rhodopseudomonas palustris CGA009 0.60 TX73_021090 carbamoyl-phosphate synthase large subunit 0.57 TX73_019935 aminomethyl-transferring glycine dehydrogenase
Dinoroseobacter shibae DFL-12 0.59 Dshi_2639 carbamoyl-phosphate synthase, large subunit (RefSeq) 0.55 Dshi_2680 glycine dehydrogenase (RefSeq) low > 64
Rhizobium sp. OAE497 0.59 ABIE40_RS12815 carbamoyl-phosphate synthase large subunit 0.54 ABIE40_RS09950 aminomethyl-transferring glycine dehydrogenase
Sinorhizobium meliloti 1021 0.59 SMc01215 carbamoyl phosphate synthase large subunit 0.55 SMc02049 glycine dehydrogenase low > 103
Agrobacterium fabrum C58 0.58 Atu2178 carbamoylphosphate synthase large subunit 0.54 Atu1462 glycine cleavage system protein P2
Phaeobacter inhibens DSM 17395 0.58 PGA1_c24560 carbamoyl-phosphate synthase large chain 0.56 PGA1_78p00310 glycine dehydrogenase
Synechococcus elongatus PCC 7942 0.57 Synpcc7942_0711 carB carbamoyl phosphate synthase large subunit 0.53 Synpcc7942_2047 gcvP glycine dehydrogenase
Synechocystis sp000284455 PCC 6803 0.57 SGL_RS14530 carbamoyl-phosphate synthase large subunit 0.55 SGL_RS11955 aminomethyl-transferring glycine dehydrogenase
Mycobacterium tuberculosis H37Rv 0.49 Rv1384 Probable carbamoyl-phosphate synthase large chain CarB (carbamoyl-phosphate synthetase ammonia chain) 0.51 Rv1832 Probable glycine dehydrogenase GcvB (glycine decarboxylase) (glycine cleavage system P-protein)
Mucilaginibacter yixingensis YX-36 DSM 26809 0.44 ABZR88_RS20475 carbamoyl-phosphate synthase large subunit 0.55 ABZR88_RS01785 aminomethyl-transferring glycine dehydrogenase
Echinicola vietnamensis KMM 6221, DSM 17526 0.43 Echvi_0768 carbamoyl-phosphate synthase, large subunit 0.55 Echvi_0744 glycine dehydrogenase (decarboxylating)
Pedobacter sp. GW460-11-11-14-LB5 0.43 CA265_RS20080 carbamoyl phosphate synthase large subunit 0.55 CA265_RS25185 glycine dehydrogenase (aminomethyl-transferring)
Pontibacter actiniarum KMM 6156, DSM 19842 0.43 CA264_15430 carbamoyl phosphate synthase large subunit 0.55 CA264_18410 glycine dehydrogenase (aminomethyl-transferring) low > 74
Cellulophaga baltica 18 0.42 M666_RS18155 carbamoyl-phosphate synthase large subunit 0.50 M666_RS01560 aminomethyl-transferring glycine dehydrogenase low > 67
Phocaeicola vulgatus CL09T03C04 0.36 HMPREF1058_RS06870 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit 0.47 HMPREF1058_RS18780 aminomethyl-transferring glycine dehydrogenase low > 67
Bacteroides thetaiotaomicron VPI-5482 0.36 BT0557 carbamyl phosphate synthetase (NCBI ptt file) 0.48 BT1147 glycine dehydrogenase [decarboxylating] (NCBI ptt file) low > 81
Phocaeicola dorei CL03T12C01 0.36 ABI39_RS20665 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit 0.47 ABI39_RS15100 aminomethyl-transferring glycine dehydrogenase low > 72
Bacteroides ovatus ATCC 8483 0.36 BACOVA_03752 carbamoyl-phosphate synthase, large subunit 0.49 BACOVA_04038 glycine dehydrogenase low > 96
Parabacteroides merdae CL09T00C40 0.36 HMPREF1078_RS01300 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit 0.46 HMPREF1078_RS15115 aminomethyl-transferring glycine dehydrogenase low > 61
Bacteroides stercoris CC31F 0.35 HMPREF1181_RS16075 carbamoyl-phosphate synthase large subunit 0.47 HMPREF1181_RS16815 aminomethyl-transferring glycine dehydrogenase low > 56

Not shown: 22 genomes with orthologs for CSW01_12100 only; 0 genomes with orthologs for CSW01_15330 only