| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_05805 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 1.0 | CSW01_12815 | | RNA polymerase sigma-54 factor | 0.58 | 1 |
| Dickeya dianthicola 67-19 | 0.79 | HGI48_RS09575 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.61 | HGI48_RS01445 | | RNA polymerase factor sigma-54 | low | > 71 |
| Klebsiella pneumoniae MKP103 | 0.79 | KDGMDA_17860 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.63 | KDGMDA_06080 | | RNA polymerase factor sigma-54 | low | > 95 |
| Dickeya dianthicola ME23 | 0.79 | DZA65_RS09885 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.61 | DZA65_RS01510 | | RNA polymerase factor sigma-54 | low | > 75 |
| Dickeya dadantii 3937 | 0.79 | DDA3937_RS09560 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.61 | DDA3937_RS01530 | | RNA polymerase factor sigma-54 | low | > 74 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.79 | GFF4901 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.63 | GFF2946 | | RNA polymerase sigma-54 factor RpoN | low | > 78 |
| Erwinia amylovora T8 | 0.79 | OLJFJH_16215 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.61 | OLJFJH_07070 | | RNA polymerase factor sigma-54 | low | > 58 |
| Escherichia coli ECRC99 | 0.79 | KEDOAH_22125 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.63 | KEDOAH_10210 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli BW25113 | 0.79 | b0882 | clpA | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) | 0.62 | b3202 | rpoN | DNA-directed RNA polymerase subunit N (NCBI) | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.79 | OHPLBJKB_02786 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.63 | OHPLBJKB_00498 | | RNA polymerase sigma-54 factor | low | > 74 |
| Escherichia coli ECRC62 | 0.79 | BNILDI_20435 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.63 | BNILDI_01795 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli Nissle 1917 | 0.79 | ECOLIN_RS04695 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.63 | ECOLIN_RS18425 | | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECRC102 | 0.79 | NIAGMN_03825 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.63 | NIAGMN_15700 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECRC98 | 0.79 | JDDGAC_09420 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.63 | JDDGAC_21565 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia fergusonii Becca | 0.79 | EFB2_03179 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.63 | EFB2_00621 | | RNA polymerase sigma-54 factor | — | — |
| Escherichia coli ECOR38 | 0.79 | HEPCGN_22900 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.63 | HEPCGN_16815 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECRC100 | 0.79 | OKFHMN_05785 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.63 | OKFHMN_17940 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECRC101 | 0.79 | MCAODC_25000 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.63 | MCAODC_08460 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECOR27 | 0.79 | NOLOHH_22180 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.62 | NOLOHH_09740 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Enterobacter sp. TBS_079 | 0.79 | MPMX20_01544 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.61 | MPMX20_04108 | | RNA polymerase sigma-54 factor | — | — |
| Enterobacter asburiae PDN3 | 0.78 | EX28DRAFT_2050 | | ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) | 0.62 | EX28DRAFT_3256 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | — | — |
| Klebsiella michiganensis M5al | 0.78 | BWI76_RS09615 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.62 | BWI76_RS25265 | | RNA polymerase factor sigma-54 | — | — |
| Pectobacterium carotovorum WPP14 | 0.78 | HER17_RS12400 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.62 | HER17_RS20060 | | RNA polymerase factor sigma-54 | low | > 75 |
| Rahnella sp. WP5 | 0.78 | EX31_RS18560 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.63 | EX31_RS12400 | | RNA polymerase factor sigma-54 | low | > 89 |
| Escherichia coli BL21 | 0.78 | ECD_00887 | | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity | 0.63 | ECD_03067 | | RNA polymerase, sigma 54 (sigma N) factor | low | > 61 |
| Serratia liquefaciens MT49 | 0.78 | IAI46_08515 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.62 | IAI46_22470 | | RNA polymerase factor sigma-54 | low | > 87 |
| Pantoea sp. MT58 | 0.78 | IAI47_12945 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.62 | IAI47_17185 | | RNA polymerase factor sigma-54 | low | > 76 |
| Pantoea agglomerans CFBP13505 P0401 | 0.78 | PagCFBP13505_RS04385 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.62 | PagCFBP13505_RS09350 | | RNA polymerase factor sigma-54 | low | > 74 |
| Erwinia tracheiphila HP pepo 2.2 | 0.76 | IJEDHG_20185 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.60 | IJEDHG_13740 | rpoN | RNA polymerase factor sigma-54 | low | > 61 |
| Erwinia tracheiphila SCR3 | 0.76 | LU632_RS09705 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.60 | LU632_RS21280 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Alteromonas macleodii MIT1002 | 0.73 | MIT1002_01834 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.63 | MIT1002_00827 | | RNA polymerase sigma-54 factor 2 | low | > 70 |
| Shewanella amazonensis SB2B | 0.72 | Sama_2056 | | ATP-dependent Clp protease, ATP-binding subunit ClpA (RefSeq) | 0.57 | Sama_3088 | | RNA polymerase factor sigma-54 (RefSeq) | low | > 62 |
| Shewanella sp. ANA-3 | 0.71 | Shewana3_1753 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | 0.57 | Shewana3_0672 | | RNA polymerase factor sigma-54 (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.71 | SO2626 | clpA | ATP-dependent Clp protease, ATP-binding subunit ClpA (NCBI ptt file) | 0.57 | SO3961 | rpoN | RNA polymerase sigma-54 factor (NCBI ptt file) | low | > 76 |
| Shewanella loihica PV-4 | 0.70 | Shew_1566 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | 0.56 | Shew_3311 | | RNA polymerase factor sigma-54 (RefSeq) | low | > 60 |
| Marinobacter adhaerens HP15 | 0.68 | HP15_2080 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.57 | HP15_2442 | | RNA polymerase, sigma 54 subunit, RpoN | low | > 73 |
| Pseudomonas simiae WCS417 | 0.67 | PS417_16510 | | Clp protease ClpX | 0.58 | PS417_04345 | | RNA polymerase factor sigma-54 | — | — |
| Pseudomonas sp. DMC3 | 0.67 | GFF1525 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.57 | GFF1828 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas sp. RS175 | 0.67 | PFR28_02613 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.56 | PFR28_00173 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas orientalis W4I3 | 0.67 | QF045_RS18265 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.58 | QF045_RS07335 | | RNA polymerase factor sigma-54 | — | — |
| Kangiella aquimarina DSM 16071 | 0.67 | B158DRAFT_1505 | | ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) | 0.34 | B158DRAFT_2080 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | low | > 40 |
| Pseudomonas sp. BP01 | 0.66 | JOY50_RS06555 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.57 | JOY50_RS11130 | | RNA polymerase factor sigma-54 | — | — |
| Pseudomonas putida KT2440 | 0.66 | PP_4008 | | ATP-dependent serine protease | 0.57 | PP_0952 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas segetis P6 | 0.66 | MPMX49_02541 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.56 | MPMX49_03858 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas fluorescens SBW25 | 0.66 | PFLU_RS18550 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.58 | PFLU_RS04400 | | RNA polymerase factor sigma-54 | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.66 | PFLU_RS18550 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.58 | PFLU_RS04400 | | RNA polymerase factor sigma-54 | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.66 | Pf1N1B4_4055 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.57 | Pf1N1B4_1080 | | RNA polymerase sigma-54 factor RpoN | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.66 | Psyr_3183 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.58 | Psyr_4147 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.66 | Psyr_3183 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.58 | Psyr_4147 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | — | — |
| Pseudomonas aeruginosa PA14 | 0.66 | IKLFDK_13150 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.57 | IKLFDK_01770 | | RNA polymerase factor sigma-54 | — | — |
| Pseudomonas sp. SVBP6 | 0.66 | COO64_RS24200 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.56 | COO64_RS04285 | | RNA polymerase factor sigma-54 | — | — |
| Pseudomonas aeruginosa MRSN321 | 0.66 | DY961_RS04120 | clpA;go_component=endopeptidase | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.57 | DY961_RS24165 | | RNA polymerase factor sigma-54 | — | — |
| Pseudomonas aeruginosa PUPa3 | 0.66 | DQ20_RS35145 | clpA;go_component=endopeptidase | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.57 | DQ20_RS56625 | | RNA polymerase factor sigma-54 | — | — |
| Pseudomonas sp. S08-1 | 0.66 | OH686_00235 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.56 | OH686_08540 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.66 | AO353_27675 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.58 | AO353_05180 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.66 | PfGW456L13_2646 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.57 | PfGW456L13_5014 | | RNA polymerase sigma-54 factor RpoN | — | — |
| Pseudomonas lactucae CFBP13502 | 0.66 | GEMAOFIL_03629 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.56 | GEMAOFIL_01075 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.66 | AO356_22150 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.58 | AO356_07035 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.66 | Pf6N2E2_292 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.56 | Pf6N2E2_3267 | | RNA polymerase sigma-54 factor RpoN | — | — |
| Pseudomonas stutzeri RCH2 | 0.66 | Psest_2027 | | ATP-dependent Clp protease ATP-binding subunit clpA | 0.56 | Psest_3313 | | RNA polymerase sigma-54 factor | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.64 | ABZR86_RS02200 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.40 | ABZR86_RS19815 | | RNA polymerase factor sigma-54 | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.64 | OKGIIK_06890 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.38 | OKGIIK_02265 | | RNA polymerase factor sigma-54 | low | > 53 |
| Rhodanobacter denitrificans FW104-10B01 | 0.64 | LRK54_RS00420 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.40 | LRK54_RS12875 | | RNA polymerase factor sigma-54 | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.64 | LRK55_RS00160 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.40 | LRK55_RS12575 | | RNA polymerase factor sigma-54 | low | > 63 |
| Rhodanobacter sp000427505 FW510-R12 | 0.64 | LRK53_RS09730 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.37 | LRK53_RS15705 | | RNA polymerase factor sigma-54 | low | > 59 |
| Lysobacter sp. OAE881 | 0.63 | ABIE51_RS11490 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.38 | ABIE51_RS15955 | | RNA polymerase factor sigma-54 | low | > 62 |
| Dechlorosoma suillum PS | 0.62 | Dsui_0009 | | ATP-dependent Clp protease ATP-binding subunit clpA | 0.41 | Dsui_0704 | | RNA polymerase sigma-54 factor | 0.88 | 32 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.62 | Xcc-8004.2754.1 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.39 | Xcc-8004.1662.1 | | RNA polymerase sigma-54 factor RpoN | low | > 74 |
| Ralstonia sp. UNC404CL21Col | 0.62 | ABZR87_RS00435 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.39 | ABZR87_RS07060 | | RNA polymerase factor sigma-54 | low | > 80 |
| Herbaspirillum seropedicae SmR1 | 0.62 | HSERO_RS07030 | | ATP-dependent Clp protease ATP-binding protein | 0.37 | HSERO_RS19855 | | RNA polymerase subunit sigma-54 | — | — |
| Ralstonia solanacearum GMI1000 | 0.62 | RS_RS12370 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.39 | RS_RS02020 | | RNA polymerase sigma-54 factor | — | — |
| Methylophilus sp. DMC18 | 0.62 | GFF1738 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.38 | GFF2777 | | RNA polymerase sigma-54 factor | — | — |
| Azospirillum brasilense Sp245 | 0.62 | AZOBR_RS05175 | | ATP-dependent Clp protease ATP-binding protein | 0.28 | AZOBR_RS18870 | | RNA polymerase sigma54 factor | 0.48 | 78 |
| Ralstonia solanacearum IBSBF1503 | 0.62 | RALBFv3_RS04810 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.39 | RALBFv3_RS11170 | | RNA polymerase sigma-54 factor | — | — |
| Ralstonia solanacearum UW163 | 0.62 | UW163_RS08860 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.39 | UW163_RS02410 | | RNA polymerase sigma-54 factor | — | — |
| Ralstonia solanacearum PSI07 | 0.61 | RPSI07_RS12575 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.39 | RPSI07_RS22130 | | RNA polymerase factor sigma-54 | low | > 81 |
| Azospirillum sp. SherDot2 | 0.61 | MPMX19_00503 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.26 | MPMX19_02668 | | RNA polymerase sigma-54 factor 2 | low | > 112 |
| Cupriavidus basilensis FW507-4G11 | 0.61 | RR42_RS17105 | | Clp protease ClpX | 0.39 | RR42_RS02085 | | RNA polymerase subunit sigma-54 | low | > 128 |
| Magnetospirillum magneticum AMB-1 | 0.61 | AMB_RS05705 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.29 | AMB_RS19925 | | RNA polymerase sigma-54 factor | — | — |
| Rhodospirillum rubrum S1H | 0.61 | Rru_A2109 | | ATP-dependent Clp protease ATP-binding subunit ClpA (NCBI) | 0.32 | Rru_A0010 | | Sigma-54 (RpoN) (NCBI) | low | > 58 |
| Variovorax sp. SCN45 | 0.60 | GFF341 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.32 | GFF6290 | | RNA polymerase sigma-54 factor RpoN | low | > 127 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.60 | GFF4521 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.32 | GFF3068 | | RNA polymerase sigma-54 factor RpoN | low | > 90 |
| Paraburkholderia sabiae LMG 24235 | 0.60 | QEN71_RS03005 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.39 | QEN71_RS01755 | | RNA polymerase factor sigma-54 | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.60 | BPHYT_RS15710 | | ATP-dependent Clp protease ATP-binding protein | 0.39 | BPHYT_RS02905 | | RNA polymerase subunit sigma-54 | low | > 109 |
| Variovorax sp. OAS795 | 0.60 | ABID97_RS16910 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.32 | ABID97_RS04780 | | RNA polymerase factor sigma-54 | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.60 | H281DRAFT_04082 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.39 | H281DRAFT_01927 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | low | > 103 |
| Acidovorax sp. GW101-3H11 | 0.60 | Ac3H11_2456 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.34 | Ac3H11_727 | | RNA polymerase sigma-54 factor RpoN | 0.49 | 20 |
| Caulobacter crescentus NA1000 | 0.60 | CCNA_02553 | | ATP-dependent clp protease ATP-binding subunit ClpA | 0.28 | CCNA_03713 | | RNA polymerase sigma-54 factor rpoN | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.60 | CCNA_02553 | | ATP-dependent clp protease ATP-binding subunit ClpA | 0.28 | CCNA_03713 | | RNA polymerase sigma-54 factor rpoN | low | > 67 |
| Dinoroseobacter shibae DFL-12 | 0.59 | Dshi_2939 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | 0.15 | Dshi_3584 | | RNA polymerase, sigma 54 subunit, RpoN (RefSeq) | low | > 64 |
| Rhizobium sp. OAE497 | 0.59 | ABIE40_RS08865 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.28 | ABIE40_RS01860 | | RNA polymerase factor sigma-54 | low | > 107 |
| Castellaniella sp019104865 MT123 | 0.59 | ABCV34_RS05305 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.29 | ABCV34_RS12430 | | RNA polymerase factor sigma-54 | low | > 48 |
| Acinetobacter baumannii LAC-4 | 0.59 | RR41_RS13895 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.40 | RR41_RS15830 | | RNA polymerase factor sigma-54 | low | > 55 |
| Sphingobium sp. HT1-2 | 0.59 | GFF2286 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.28 | GFF776 | | RNA polymerase sigma-54 factor RpoN | 0.98 | 4 |
| Sphingomonas koreensis DSMZ 15582 | 0.59 | Ga0059261_1001 | | ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) | 0.28 | Ga0059261_2543 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | low | > 68 |
| Bosea sp. OAE506 | 0.59 | ABIE41_RS18235 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.30 | ABIE41_RS00125 | | RNA polymerase factor sigma-54 | low | > 77 |
| Acinetobacter radioresistens SK82 | 0.59 | MPMX26_01284 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.37 | MPMX26_02592 | | RNA polymerase sigma-54 factor | low | > 36 |
| Xanthobacter sp. DMC5 | 0.58 | GFF1010 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.28 | GFF4467 | | RNA polymerase sigma-54 factor 2 | — | — |
| Rhodopseudomonas palustris CGA009 | 0.58 | TX73_016270 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.26 | TX73_000260 | | RNA polymerase factor sigma-54 | low | > 86 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.58 | A4249_RS08390 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.26 | A4249_RS16075 | | RNA polymerase factor sigma-54 | low | > 48 |
| Sinorhizobium meliloti 1021 | 0.58 | SMc02109 | | ATP-dependent Clp protease ATP-binding subunit protein | 0.28 | SMc01139 | | RNA polymerase factor sigma-54 | — | — |
| Agrobacterium fabrum C58 | 0.58 | Atu1364 | | ATP-dependent Clp protease, ATP-binding subunit | 0.28 | Atu0332 | | RNA polymerase sigma-54 factor | low | > 89 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.52 | DVU1602 | clpA | ATP-dependent Clp protease, ATP-binding subunit ClpA (TIGR) | 0.32 | DVU1628 | rpoN | RNA polymerase sigma-54 factor (TIGR) | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.51 | DvMF_0458 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | 0.32 | DvMF_0427 | | RNA polymerase, sigma 54 subunit, RpoN (RefSeq) | — | — |
| Phocaeicola dorei CL03T12C01 | 0.40 | ABI39_RS03345 | | AAA family ATPase | 0.19 | ABI39_RS04230 | | RNA polymerase factor sigma-54 | low | > 72 |
| Phocaeicola vulgatus CL09T03C04 | 0.40 | HMPREF1058_RS09040 | | AAA family ATPase | 0.19 | HMPREF1058_RS12505 | | RNA polymerase factor sigma-54 | low | > 67 |
Not shown: 1 genomes with orthologs for CSW01_05805 only; 11 genomes with orthologs for CSW01_12815 only