| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_12815 | | RNA polymerase sigma-54 factor | 1.0 | CSW01_11535 | | thiamine-phosphate kinase | 0.55 | 11 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.63 | GFF2946 | | RNA polymerase sigma-54 factor RpoN | 0.48 | GFF4321 | | Thiamine-monophosphate kinase (EC 2.7.4.16) | — | — |
| Escherichia coli ECRC101 | 0.63 | MCAODC_08460 | rpoN | RNA polymerase factor sigma-54 | 0.49 | MCAODC_27665 | thiL | thiamine-phosphate kinase | — | — |
| Escherichia coli Nissle 1917 | 0.63 | ECOLIN_RS18425 | | RNA polymerase factor sigma-54 | 0.49 | ECOLIN_RS02520 | | thiamine-phosphate kinase | — | — |
| Escherichia coli ECRC62 | 0.63 | BNILDI_01795 | rpoN | RNA polymerase factor sigma-54 | 0.49 | BNILDI_22800 | thiL | thiamine-phosphate kinase | — | — |
| Rahnella sp. WP5 | 0.63 | EX31_RS12400 | | RNA polymerase factor sigma-54 | 0.49 | EX31_RS22140 | | thiamine-phosphate kinase | — | — |
| Escherichia coli ECRC102 | 0.63 | NIAGMN_15700 | rpoN | RNA polymerase factor sigma-54 | 0.49 | NIAGMN_06495 | thiL | thiamine-phosphate kinase | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.63 | OHPLBJKB_00498 | | RNA polymerase sigma-54 factor | 0.49 | OHPLBJKB_03259 | | Thiamine-monophosphate kinase | — | — |
| Escherichia coli ECRC100 | 0.63 | OKFHMN_17940 | rpoN | RNA polymerase factor sigma-54 | 0.49 | OKFHMN_08440 | thiL | thiamine-phosphate kinase | — | — |
| Escherichia coli ECRC98 | 0.63 | JDDGAC_21565 | rpoN | RNA polymerase factor sigma-54 | 0.49 | JDDGAC_12095 | thiL | thiamine-phosphate kinase | — | — |
| Escherichia coli ECOR38 | 0.63 | HEPCGN_16815 | rpoN | RNA polymerase factor sigma-54 | 0.49 | HEPCGN_07065 | thiL | thiamine-phosphate kinase | — | — |
| Escherichia coli BL21 | 0.63 | ECD_03067 | | RNA polymerase, sigma 54 (sigma N) factor | 0.49 | ECD_00365 | | thiamine monophosphate kinase | — | — |
| Escherichia fergusonii Becca | 0.63 | EFB2_00621 | | RNA polymerase sigma-54 factor | 0.49 | EFB2_03640 | | Thiamine-monophosphate kinase | — | — |
| Escherichia coli ECRC99 | 0.63 | KEDOAH_10210 | rpoN | RNA polymerase factor sigma-54 | 0.49 | KEDOAH_19525 | thiL | thiamine-phosphate kinase | — | — |
| Alteromonas macleodii MIT1002 | 0.63 | MIT1002_00827 | | RNA polymerase sigma-54 factor 2 | 0.49 | MIT1002_02695 | | Thiamine-monophosphate kinase | — | — |
| Escherichia coli ECOR27 | 0.62 | NOLOHH_09740 | rpoN | RNA polymerase factor sigma-54 | 0.49 | NOLOHH_01385 | thiL | thiamine-phosphate kinase | — | — |
| Escherichia coli BW25113 | 0.62 | b3202 | rpoN | DNA-directed RNA polymerase subunit N (NCBI) | 0.49 | b0417 | thiL | thiamine monophosphate kinase (NCBI) | — | — |
| Enterobacter asburiae PDN3 | 0.62 | EX28DRAFT_3256 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | 0.50 | EX28DRAFT_2553 | | thiamine-phosphate kinase | — | — |
| Klebsiella michiganensis M5al | 0.62 | BWI76_RS25265 | | RNA polymerase factor sigma-54 | 0.49 | BWI76_RS06365 | | thiamine-monophosphate kinase | — | — |
| Serratia liquefaciens MT49 | 0.62 | IAI46_22470 | | RNA polymerase factor sigma-54 | 0.49 | IAI46_04910 | | thiamine-phosphate kinase | — | — |
| Pantoea sp. MT58 | 0.62 | IAI47_17185 | | RNA polymerase factor sigma-54 | 0.50 | IAI47_14755 | | thiamine-phosphate kinase | — | — |
| Pectobacterium carotovorum WPP14 | 0.62 | HER17_RS20060 | | RNA polymerase factor sigma-54 | 0.49 | HER17_RS15945 | | thiamine-phosphate kinase | — | — |
| Dickeya dianthicola 67-19 | 0.61 | HGI48_RS01445 | | RNA polymerase factor sigma-54 | 0.48 | HGI48_RS05580 | | thiamine-phosphate kinase | — | — |
| Dickeya dadantii 3937 | 0.61 | DDA3937_RS01530 | | RNA polymerase factor sigma-54 | 0.50 | DDA3937_RS05520 | | thiamine-phosphate kinase | — | — |
| Dickeya dianthicola ME23 | 0.61 | DZA65_RS01510 | | RNA polymerase factor sigma-54 | 0.48 | DZA65_RS05905 | | thiamine-phosphate kinase | — | — |
| Erwinia amylovora T8 | 0.61 | OLJFJH_07070 | | RNA polymerase factor sigma-54 | 0.49 | OLJFJH_18075 | | thiamine-phosphate kinase | — | — |
| Enterobacter sp. TBS_079 | 0.61 | MPMX20_04108 | | RNA polymerase sigma-54 factor | 0.50 | MPMX20_01009 | | Thiamine-monophosphate kinase | — | — |
| Erwinia tracheiphila SCR3 | 0.60 | LU632_RS21280 | rpoN | RNA polymerase factor sigma-54 | 0.48 | LU632_RS18610 | thiL | thiamine-phosphate kinase | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.58 | AO353_05180 | | RNA polymerase sigma-54 factor | 0.31 | AO353_06690 | | thiamine monophosphate kinase | — | — |
| Pseudomonas fluorescens SBW25 | 0.58 | PFLU_RS04400 | | RNA polymerase factor sigma-54 | 0.32 | PFLU_RS26875 | | thiamine-phosphate kinase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.58 | PFLU_RS04400 | | RNA polymerase factor sigma-54 | 0.32 | PFLU_RS26875 | | thiamine-phosphate kinase | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.58 | Psyr_4147 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | 0.33 | Psyr_4457 | | thiamine-phosphate kinase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.58 | Psyr_4147 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | 0.33 | Psyr_4457 | | thiamine-phosphate kinase | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.58 | AO356_07035 | | RNA polymerase sigma-54 factor | 0.31 | AO356_14955 | | thiamine monophosphate kinase | — | — |
| Pseudomonas simiae WCS417 | 0.58 | PS417_04345 | | RNA polymerase factor sigma-54 | 0.31 | PS417_25240 | | thiamine monophosphate kinase | — | — |
| Pseudomonas sp. DMC3 | 0.57 | GFF1828 | | RNA polymerase sigma-54 factor | 0.32 | GFF3832 | | Thiamine-monophosphate kinase | — | — |
| Shewanella oneidensis MR-1 | 0.57 | SO3961 | rpoN | RNA polymerase sigma-54 factor (NCBI ptt file) | 0.47 | SO3464 | thiL | thiamin-monophosphate kinase (NCBI ptt file) | — | — |
| Marinobacter adhaerens HP15 | 0.57 | HP15_2442 | | RNA polymerase, sigma 54 subunit, RpoN | 0.28 | HP15_496 | | thiamine-monophosphate kinase | — | — |
| Shewanella sp. ANA-3 | 0.57 | Shewana3_0672 | | RNA polymerase factor sigma-54 (RefSeq) | 0.48 | Shewana3_1101 | | thiamine-monophosphate kinase (RefSeq) | — | — |
| Pseudomonas aeruginosa PA14 | 0.57 | IKLFDK_01770 | | RNA polymerase factor sigma-54 | 0.31 | IKLFDK_20885 | | thiamine-phosphate kinase | — | — |
| Shewanella amazonensis SB2B | 0.57 | Sama_3088 | | RNA polymerase factor sigma-54 (RefSeq) | 0.46 | Sama_1021 | | thiamine-phosphate kinase (RefSeq) | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.57 | PfGW456L13_5014 | | RNA polymerase sigma-54 factor RpoN | 0.33 | PfGW456L13_1318 | | Thiamine-monophosphate kinase (EC 2.7.4.16) | — | — |
| Pseudomonas sp. BP01 | 0.57 | JOY50_RS11130 | | RNA polymerase factor sigma-54 | 0.31 | JOY50_RS20100 | thiL | thiamine-phosphate kinase | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.57 | Pf1N1B4_1080 | | RNA polymerase sigma-54 factor RpoN | 0.33 | Pf1N1B4_2654 | | Thiamine-monophosphate kinase (EC 2.7.4.16) | — | — |
| Pseudomonas putida KT2440 | 0.57 | PP_0952 | | RNA polymerase sigma-54 factor | 0.31 | PP_0519 | | thiamin monophosphate kinase | — | — |
| Pseudomonas sp. RS175 | 0.56 | PFR28_00173 | | RNA polymerase sigma-54 factor | 0.33 | PFR28_03944 | | Thiamine-monophosphate kinase | — | — |
| Pseudomonas stutzeri RCH2 | 0.56 | Psest_3313 | | RNA polymerase sigma-54 factor | 0.32 | Psest_3547 | | thiamine-monophosphate kinase | — | — |
| Pseudomonas sp. SVBP6 | 0.56 | COO64_RS04285 | | RNA polymerase factor sigma-54 | 0.33 | COO64_RS15865 | thiL | thiamine-phosphate kinase | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.56 | Pf6N2E2_3267 | | RNA polymerase sigma-54 factor RpoN | 0.31 | Pf6N2E2_4924 | | Thiamine-monophosphate kinase (EC 2.7.4.16) | — | — |
| Pseudomonas sp. S08-1 | 0.56 | OH686_08540 | | RNA polymerase sigma-54 factor | 0.31 | OH686_15720 | | thiamine-phosphate kinase | — | — |
| Shewanella loihica PV-4 | 0.56 | Shew_3311 | | RNA polymerase factor sigma-54 (RefSeq) | 0.47 | Shew_1192 | | thiamine-monophosphate kinase (RefSeq) | — | — |
| Dechlorosoma suillum PS | 0.41 | Dsui_0704 | | RNA polymerase sigma-54 factor | 0.29 | Dsui_0712 | | thiamine-monophosphate kinase | — | — |
| Rhodanobacter denitrificans MT42 | 0.40 | LRK55_RS12575 | | RNA polymerase factor sigma-54 | 0.36 | LRK55_RS04345 | | thiamine-phosphate kinase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.40 | ABZR86_RS19815 | | RNA polymerase factor sigma-54 | 0.37 | ABZR86_RS10645 | | thiamine-phosphate kinase | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.40 | LRK54_RS12875 | | RNA polymerase factor sigma-54 | 0.36 | LRK54_RS04570 | | thiamine-phosphate kinase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.39 | ABZR87_RS07060 | | RNA polymerase factor sigma-54 | 0.31 | ABZR87_RS01570 | | thiamine-phosphate kinase | — | — |
| Ralstonia solanacearum GMI1000 | 0.39 | RS_RS02020 | | RNA polymerase sigma-54 factor | 0.34 | RS_RS13850 | | thiamine-phosphate kinase | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.39 | H281DRAFT_01927 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | 0.32 | H281DRAFT_06307 | | thiamine-phosphate kinase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.39 | QEN71_RS01755 | | RNA polymerase factor sigma-54 | 0.33 | QEN71_RS27045 | | thiamine-phosphate kinase | — | — |
| Paraburkholderia graminis OAS925 | 0.39 | ABIE53_000718 | | RNA polymerase sigma-54 factor | 0.34 | ABIE53_003544 | | thiamine-monophosphate kinase | — | — |
| Burkholderia phytofirmans PsJN | 0.39 | BPHYT_RS02905 | | RNA polymerase subunit sigma-54 | 0.31 | BPHYT_RS16885 | | thiamine monophosphate kinase | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.39 | Xcc-8004.1662.1 | | RNA polymerase sigma-54 factor RpoN | 0.28 | Xcc-8004.4386.1 | | Thiamine-monophosphate kinase (EC 2.7.4.16) | — | — |
| Ralstonia solanacearum PSI07 | 0.39 | RPSI07_RS22130 | | RNA polymerase factor sigma-54 | 0.33 | RPSI07_RS11340 | | thiamine-phosphate kinase | — | — |
| Ralstonia solanacearum UW163 | 0.39 | UW163_RS02410 | | RNA polymerase sigma-54 factor | 0.34 | UW163_RS07720 | | thiamine-phosphate kinase | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.39 | RR42_RS02085 | | RNA polymerase subunit sigma-54 | 0.31 | RR42_RS17615 | | thiamine monophosphate kinase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.39 | RALBFv3_RS11170 | | RNA polymerase sigma-54 factor | 0.34 | RALBFv3_RS05905 | | thiamine-phosphate kinase | — | — |
| Rhodanobacter sp. FW510-T8 | 0.38 | OKGIIK_02265 | | RNA polymerase factor sigma-54 | 0.36 | OKGIIK_11395 | thiL | thiamine-phosphate kinase | — | — |
| Lysobacter sp. OAE881 | 0.38 | ABIE51_RS15955 | | RNA polymerase factor sigma-54 | 0.34 | ABIE51_RS04660 | | thiamine-phosphate kinase | — | — |
| Methylophilus sp. DMC18 | 0.38 | GFF2777 | | RNA polymerase sigma-54 factor | 0.32 | GFF837 | | Thiamine-monophosphate kinase | — | — |
| Rhodanobacter sp000427505 FW510-R12 | 0.37 | LRK53_RS15705 | | RNA polymerase factor sigma-54 | 0.36 | LRK53_RS05440 | | thiamine-phosphate kinase | — | — |
| Acinetobacter radioresistens SK82 | 0.37 | MPMX26_02592 | | RNA polymerase sigma-54 factor | 0.32 | MPMX26_02973 | | Thiamine-monophosphate kinase | — | — |
| Herbaspirillum seropedicae SmR1 | 0.37 | HSERO_RS19855 | | RNA polymerase subunit sigma-54 | 0.35 | HSERO_RS16830 | | thiamine monophosphate kinase | — | — |
| Kangiella aquimarina DSM 16071 | 0.34 | B158DRAFT_2080 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | 0.33 | B158DRAFT_1916 | | thiamine-monophosphate kinase | — | — |
| Acidovorax sp. GW101-3H11 | 0.34 | Ac3H11_727 | | RNA polymerase sigma-54 factor RpoN | 0.35 | Ac3H11_749 | | Thiamine-monophosphate kinase (EC 2.7.4.16) | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.32 | GFF3068 | | RNA polymerase sigma-54 factor RpoN | 0.30 | GFF3093 | | Thiamine-monophosphate kinase (EC 2.7.4.16) | — | — |
| Rhodospirillum rubrum S1H | 0.32 | Rru_A0010 | | Sigma-54 (RpoN) (NCBI) | 0.23 | Rru_A1820 | | Thiamine-monophosphate kinase (NCBI) | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.32 | DVU1628 | rpoN | RNA polymerase sigma-54 factor (TIGR) | 0.18 | DVU0157 | thiL | thiamin-monophosphate kinase (TIGR) | — | — |
| Variovorax sp. OAS795 | 0.32 | ABID97_RS04780 | | RNA polymerase factor sigma-54 | 0.33 | ABID97_RS04870 | | thiamine-phosphate kinase | — | — |
| Variovorax sp. SCN45 | 0.32 | GFF6290 | | RNA polymerase sigma-54 factor RpoN | 0.33 | GFF6265 | | Thiamine-monophosphate kinase (EC 2.7.4.16) | — | — |
| Bosea sp. OAE506 | 0.30 | ABIE41_RS00125 | | RNA polymerase factor sigma-54 | 0.22 | ABIE41_RS19740 | | thiamine-phosphate kinase | — | — |
| Castellaniella sp019104865 MT123 | 0.29 | ABCV34_RS12430 | | RNA polymerase factor sigma-54 | 0.29 | ABCV34_RS10120 | | thiamine-phosphate kinase | — | — |
| Xanthobacter sp. DMC5 | 0.28 | GFF4467 | | RNA polymerase sigma-54 factor 2 | 0.22 | GFF581 | | Thiamine-monophosphate kinase | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.28 | CCNA_03713 | | RNA polymerase sigma-54 factor rpoN | 0.19 | CCNA_01423 | | thiamine-monophosphate kinase | — | — |
| Caulobacter crescentus NA1000 | 0.28 | CCNA_03713 | | RNA polymerase sigma-54 factor rpoN | 0.19 | CCNA_01423 | | thiamine-monophosphate kinase | — | — |
| Azospirillum brasilense Sp245 | 0.28 | AZOBR_RS18870 | | RNA polymerase sigma54 factor | 0.26 | AZOBR_RS10050 | | thiamine-monophosphate kinase | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.26 | A4249_RS16075 | | RNA polymerase factor sigma-54 | 0.20 | A4249_RS06005 | | thiamine-phosphate kinase | — | — |
| Azospirillum sp. SherDot2 | 0.26 | MPMX19_02668 | | RNA polymerase sigma-54 factor 2 | 0.27 | MPMX19_00731 | | Thiamine-monophosphate kinase | — | — |
| Rhodopseudomonas palustris CGA009 | 0.26 | TX73_000260 | | RNA polymerase factor sigma-54 | 0.21 | TX73_014145 | | thiamine-phosphate kinase | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.25 | Echvi_0071 | | RNA polymerase sigma-54 factor | 0.20 | Echvi_0088 | | thiamine-monophosphate kinase | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.25 | CA265_RS11005 | | RNA polymerase sigma-54 factor | 0.15 | CA265_RS21170 | | thiamine-phosphate kinase | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.25 | CA264_18070 | | RNA polymerase sigma-54 factor | 0.18 | CA264_02015 | | thiamine-phosphate kinase | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.24 | ABZR88_RS14570 | | RNA polymerase factor sigma-54 | 0.17 | ABZR88_RS20925 | | thiamine-phosphate kinase | — | — |
| Parabacteroides merdae CL09T00C40 | 0.24 | HMPREF1078_RS05920 | | RNA polymerase factor sigma-54 | 0.16 | HMPREF1078_RS13035 | | thiamine-phosphate kinase | — | — |
| Cellulophaga baltica 18 | 0.23 | M666_RS07505 | | RNA polymerase factor sigma-54 | 0.17 | M666_RS05690 | | thiamine-phosphate kinase | — | — |
| Phocaeicola dorei CL03T12C01 | 0.19 | ABI39_RS04230 | | RNA polymerase factor sigma-54 | 0.16 | ABI39_RS07910 | | thiamine-phosphate kinase | low | > 72 |
| Phocaeicola vulgatus CL09T03C04 | 0.19 | HMPREF1058_RS12505 | | RNA polymerase factor sigma-54 | 0.17 | HMPREF1058_RS12880 | | thiamine-phosphate kinase | low | > 67 |
| Bacteroides stercoris CC31F | 0.18 | HMPREF1181_RS00925 | | RNA polymerase factor sigma-54 | 0.16 | HMPREF1181_RS07645 | | thiamine-phosphate kinase | — | — |
| Bacteroides ovatus ATCC 8483 | 0.18 | BACOVA_01616 | | RNA polymerase sigma-54 factor | 0.17 | BACOVA_02937 | | thiamine-phosphate kinase | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.18 | BT2521 | | RNA polymerase sigma-54 (NCBI ptt file) | 0.17 | BT1882 | | putative thiamine-monophosphate kinase (NCBI ptt file) | — | — |
Not shown: 8 genomes with orthologs for CSW01_12815 only; 4 genomes with orthologs for CSW01_11535 only