Conservation of cofitness between CSW01_03090 and CSW01_11345 in Vibrio cholerae E7946 ATCC 55056

98 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03090 rRNA (cytidine-2'-O-)-methyltransferase 1.0 CSW01_11345 uracil phosphoribosyltransferase 0.67 18
Pectobacterium carotovorum WPP14 0.65 HER17_RS19860 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.89 HER17_RS15460 uracil phosphoribosyltransferase low > 75
Erwinia amylovora T8 0.65 OLJFJH_02280 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.90 OLJFJH_10595 uracil phosphoribosyltransferase low > 58
Escherichia coli ECOR38 0.64 HEPCGN_17110 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.89 HEPCGN_20980 upp uracil phosphoribosyltransferase low > 88
Escherichia fergusonii Becca 0.64 EFB2_00677 Ribosomal RNA small subunit methyltransferase I 0.89 EFB2_01400 Uracil phosphoribosyltransferase low > 86
Escherichia coli Nissle 1917 0.64 ECOLIN_RS18085 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.89 ECOLIN_RS14185 uracil phosphoribosyltransferase low > 55
Escherichia coli BW25113 0.64 b3146 yraL predicted methyltransferase (NCBI) 0.89 b2498 upp uracil phosphoribosyltransferase (VIMSS) low > 76
Dickeya dadantii 3937 0.64 DDA3937_RS01715 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.88 DDA3937_RS06030 uracil phosphoribosyltransferase low > 74
Escherichia coli ECRC102 0.64 NIAGMN_15995 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.89 NIAGMN_19585 upp uracil phosphoribosyltransferase low > 80
Escherichia coli ECRC99 0.64 KEDOAH_09915 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.89 KEDOAH_06405 upp uracil phosphoribosyltransferase — —
Escherichia coli BL21 0.64 ECD_03013 16S rRNA C1402 2'-O-ribose methyltransferase, SAM-dependent 0.89 ECD_02390 uracil phosphoribosyltransferase low > 61
Escherichia coli ECRC101 0.64 MCAODC_08755 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.89 MCAODC_12345 upp uracil phosphoribosyltransferase low > 87
Escherichia coli ECRC98 0.64 JDDGAC_21860 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.89 JDDGAC_25760 upp uracil phosphoribosyltransferase low > 87
Escherichia coli ECRC100 0.64 OKFHMN_18235 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.89 OKFHMN_21815 upp uracil phosphoribosyltransferase low > 79
Escherichia coli HS(pFamp)R (ATCC 700891) 0.64 OHPLBJKB_00555 Ribosomal RNA small subunit methyltransferase I 0.89 OHPLBJKB_01228 Uracil phosphoribosyltransferase low > 74
Erwinia tracheiphila SCR3 0.64 LU632_RS02230 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.88 LU632_RS08280 upp uracil phosphoribosyltransferase low > 73
Dickeya dianthicola 67-19 0.64 HGI48_RS01610 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.87 HGI48_RS06075 uracil phosphoribosyltransferase low > 71
Shewanella loihica PV-4 0.63 Shew_0228 uroporphyrin-III C/tetrapyrrole methyltransferase (RefSeq) 0.91 Shew_1514 upp uracil phosphoribosyltransferase (RefSeq) low > 60
Erwinia tracheiphila HP pepo 2.2 0.63 IJEDHG_06680 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.88 IJEDHG_18370 upp uracil phosphoribosyltransferase low > 61
Dickeya dianthicola ME23 0.63 DZA65_RS01685 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.88 DZA65_RS06425 uracil phosphoribosyltransferase low > 75
Escherichia coli ECRC62 0.63 BNILDI_01495 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.89 BNILDI_12275 upp uracil phosphoribosyltransferase low > 75
Escherichia coli ECOR27 0.63 NOLOHH_10035 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.89 NOLOHH_13465 upp uracil phosphoribosyltransferase low > 76
Pantoea agglomerans CFBP13505 P0401 0.63 PagCFBP13505_RS11450 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.90 PagCFBP13505_RS15075 uracil phosphoribosyltransferase low > 74
Shewanella oneidensis MR-1 0.63 SO0301 hypothetical methyltransferase (NCBI ptt file) 0.89 SO2759 upp uracil phosphoribosyltransferase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.62 Shewana3_3879 hypothetical protein (RefSeq) 0.90 Shewana3_2544 upp uracil phosphoribosyltransferase (RefSeq) low > 73
Shewanella amazonensis SB2B 0.62 Sama_3353 hypothetical protein (RefSeq) 0.89 Sama_2096 upp uracil phosphoribosyltransferase (RefSeq) low > 62
Enterobacter asburiae PDN3 0.61 EX28DRAFT_3195 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.91 EX28DRAFT_0170 uracil phosphoribosyltransferase (EC 2.4.2.9) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.61 GFF1521 rRNA small subunit methyltransferase I 0.89 GFF2171 Uracil phosphoribosyltransferase (EC 2.4.2.9) low > 78
Enterobacter sp. TBS_079 0.61 MPMX20_04050 Ribosomal RNA small subunit methyltransferase I 0.90 MPMX20_03352 Uracil phosphoribosyltransferase low > 85
Rahnella sp. WP5 0.61 EX31_RS12550 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.90 EX31_RS22700 uracil phosphoribosyltransferase low > 89
Pantoea sp. MT58 0.61 IAI47_02850 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.90 IAI47_05185 uracil phosphoribosyltransferase low > 76
Klebsiella michiganensis M5al 0.60 BWI76_RS24910 rRNA (cytidine-2'-O-)-methyltransferase 0.89 BWI76_RS20945 uracil phosphoribosyltransferase low > 92
Serratia liquefaciens MT49 0.59 IAI46_22295 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.90 IAI46_18880 uracil phosphoribosyltransferase 0.63 25
Klebsiella pneumoniae MKP103 0.58 KDGMDA_05780 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.89 KDGMDA_27790 uracil phosphoribosyltransferase low > 95
Pseudomonas segetis P6 0.55 ACVTMO_RS18925 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.71 ACVTMO_RS18045 upp uracil phosphoribosyltransferase low > 75
Pseudomonas sp. SVBP6 0.54 COO64_RS11845 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.72 COO64_RS03295 upp uracil phosphoribosyltransferase low > 93
Pseudomonas sp. DMC3 0.54 GFF4428 Ribosomal RNA small subunit methyltransferase I 0.70 GFF4471 Uracil phosphoribosyltransferase low > 89
Pseudomonas fluorescens FW300-N2E2 0.53 Pf6N2E2_5346 rRNA small subunit methyltransferase I 0.70 Pf6N2E2_5235 Uracil phosphoribosyltransferase (EC 2.4.2.9) low > 103
Pseudomonas fluorescens FW300-N2C3 0.53 AO356_17110 methyltransferase 0.70 AO356_16565 uracil phosphoribosyltransferase low > 104
Pseudomonas lactucae CFBP13502 0.53 GEMAOFIL_01121 Ribosomal RNA small subunit methyltransferase I 0.71 GEMAOFIL_01092 Uracil phosphoribosyltransferase low > 96
Pseudomonas syringae pv. syringae B728a ΔmexB 0.53 Psyr_4112 Protein of unknown function UPF0011 0.72 Psyr_0969 uracil phosphoribosyltransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.53 Psyr_4112 Protein of unknown function UPF0011 0.72 Psyr_0969 uracil phosphoribosyltransferase low > 86
Pseudomonas fluorescens FW300-N2E3 0.53 AO353_15290 methyltransferase 0.72 AO353_14855 uracil phosphoribosyltransferase low > 101
Pseudomonas sp. RS175 0.53 PFR28_03597 Ribosomal RNA small subunit methyltransferase I 0.70 PFR28_03641 Uracil phosphoribosyltransferase low > 88
Pseudomonas orientalis W4I3 0.53 QF045_RS07580 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.71 QF045_RS07420 uracil phosphoribosyltransferase low > 93
Pseudomonas fluorescens SBW25 0.53 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.71 PFLU_RS04485 uracil phosphoribosyltransferase low > 109
Pseudomonas simiae WCS417 0.53 PS417_04590 methyltransferase 0.72 PS417_04435 uracil phosphoribosyltransferase low > 88
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.71 PFLU_RS04485 uracil phosphoribosyltransferase low > 109
Pseudomonas stutzeri RCH2 0.52 Psest_3270 probable S-adenosylmethionine-dependent methyltransferase, YraL family 0.73 Psest_1120 uracil phosphoribosyltransferase 0.23 9
Pseudomonas putida KT2440 0.52 PP_1326 16S rRNA 2'-O-ribose C1402 methyltransferase 0.70 PP_0746 Uracil phosphoribosyltransferase low > 96
Pseudomonas sp. BP01 0.52 JOY50_RS15165 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.70 JOY50_RS19525 upp uracil phosphoribosyltransferase low > 84
Pseudomonas fluorescens FW300-N1B4 0.52 Pf1N1B4_953 rRNA small subunit methyltransferase I 0.71 Pf1N1B4_2934 Uracil phosphoribosyltransferase (EC 2.4.2.9) — —
Pseudomonas sp. S08-1 0.51 OH686_08340 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.71 OH686_17985 uracil phosphoribosyltransferase 0.62 67
Pseudomonas fluorescens GW456-L13 0.51 PfGW456L13_1643 rRNA small subunit methyltransferase I 0.71 PfGW456L13_1597 Uracil phosphoribosyltransferase (EC 2.4.2.9) low > 87
Pseudomonas aeruginosa PUPa3 0.50 DQ20_RS56825 rsmI;go_function=rRNA 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.69 DQ20_RS55635 upp;go_function=uracil uracil phosphoribosyltransferase low > 101
Pseudomonas aeruginosa PA14 0.50 IKLFDK_01980 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.69 IKLFDK_00265 uracil phosphoribosyltransferase — —
Pseudomonas aeruginosa MRSN321 0.50 DY961_RS24365 rsmI;go_function=rRNA 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.69 DY961_RS29060 upp;go_function=uracil uracil phosphoribosyltransferase low > 100
Alteromonas macleodii MIT1002 0.49 MIT1002_03113 Ribosomal RNA small subunit methyltransferase I 0.71 MIT1002_02893 Uracil phosphoribosyltransferase low > 70
Dyella japonica UNC79MFTsu3.2 0.49 ABZR86_RS11380 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.72 ABZR86_RS09615 uracil phosphoribosyltransferase low > 74
Xanthomonas campestris pv. campestris strain 8004 0.47 Xcc-8004.4371.1 rRNA small subunit methyltransferase I 0.69 Xcc-8004.2160.1 Uracil phosphoribosyltransferase (EC 2.4.2.9) low > 74
Marinobacter adhaerens HP15 0.46 HP15_554 tetrapyrrole methylase family protein 0.72 HP15_2306 uracil phosphoribosyltransferase low > 73
Rhodanobacter denitrificans MT42 0.45 LRK55_RS11925 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.72 LRK55_RS02920 uracil phosphoribosyltransferase low > 63
Dechlorosoma suillum PS 0.45 Dsui_0251 putative S-adenosylmethionine-dependent methyltransferase, YraL family 0.74 Dsui_2333 uracil phosphoribosyltransferase low > 51
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS12190 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.72 LRK54_RS03170 uracil phosphoribosyltransferase low > 59
Rhodanobacter sp000427505 FW510-R12 0.45 LRK53_RS16300 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.72 LRK53_RS06810 uracil phosphoribosyltransferase 0.34 43
Herbaspirillum seropedicae SmR1 0.45 HSERO_RS23345 16S rRNA methyltransferase 0.47 HSERO_RS03500 uracil phosphoribosyltransferase low > 78
Lysobacter sp. OAE881 0.44 ABIE51_RS04695 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.73 ABIE51_RS15050 uracil phosphoribosyltransferase low > 62
Rhodanobacter sp. FW510-T8 0.44 OKGIIK_11735 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.70 OKGIIK_10040 upp uracil phosphoribosyltransferase low > 53
Acinetobacter radioresistens SK82 0.44 MPMX26_02282 Ribosomal RNA small subunit methyltransferase I 0.67 MPMX26_02542 Uracil phosphoribosyltransferase low > 36
Acinetobacter baumannii LAC-4 0.44 RR41_RS09275 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.67 RR41_RS15445 uracil phosphoribosyltransferase low > 55
Paraburkholderia sabiae LMG 24235 0.42 QEN71_RS00655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.47 QEN71_RS24390 uracil phosphoribosyltransferase low > 153
Burkholderia phytofirmans PsJN 0.40 BPHYT_RS01940 16S rRNA methyltransferase 0.46 BPHYT_RS06415 uracil phosphoribosyltransferase low > 109
Synechocystis sp000284455 PCC 6803 0.40 SGL_RS09835 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.37 SGL_RS02850 uracil phosphoribosyltransferase low > 52
Sinorhizobium meliloti 1021 0.39 SMc00416 hypothetical protein 0.53 SMc04121 uracil phosphoribosyltransferase low > 103
Paraburkholderia bryophila 376MFSha3.1 0.39 H281DRAFT_02152 16S rRNA (cytidine1402-2'-O)-methyltransferase 0.45 H281DRAFT_04523 uracil phosphoribosyltransferase low > 103
Paraburkholderia graminis OAS925 0.38 ABIE53_000470 16S rRNA (cytidine1402-2'-O)-methyltransferase 0.46 ABIE53_001547 uracil phosphoribosyltransferase low > 113
Rhizobium sp. OAE497 0.38 ABIE40_RS01370 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.53 ABIE40_RS00825 uracil phosphoribosyltransferase low > 107
Castellaniella sp019104865 MT123 0.38 ABCV34_RS14320 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.68 ABCV34_RS15380 uracil phosphoribosyltransferase low > 48
Synechococcus elongatus PCC 7942 0.38 Synpcc7942_0174 hypothetical protein 0.42 Synpcc7942_1715 upp uracil phosphoribosyltransferase — —
Cupriavidus basilensis FW507-4G11 0.37 RR42_RS19740 16S rRNA methyltransferase 0.54 RR42_RS30815 uracil phosphoribosyltransferase low > 128
Agrobacterium fabrum C58 0.37 Atu0302 tetrapyrrole methylase family protein 0.53 Atu0135 uracil phosphoribosyltransferase low > 89
Bosea sp. OAE506 0.35 ABIE41_RS03315 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.54 ABIE41_RS22700 uracil phosphoribosyltransferase low > 77
Azospirillum sp. SherDot2 0.35 MPMX19_02471 Ribosomal RNA small subunit methyltransferase I 0.45 MPMX19_02205 Uracil phosphoribosyltransferase low > 112
Azospirillum brasilense Sp245 0.34 AZOBR_RS02155 16S rRNA methyltransferase 0.43 AZOBR_RS03150 uracil phosphoribosyltransferase low > 97
Acidovorax sp. GW101-3H11 0.34 Ac3H11_4466 rRNA small subunit methyltransferase I 0.52 Ac3H11_2428 Uracil phosphoribosyltransferase (EC 2.4.2.9) — —
Ralstonia solanacearum UW163 0.34 UW163_RS05115 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.48 UW163_RS10140 uracil phosphoribosyltransferase — —
Ralstonia solanacearum IBSBF1503 0.34 RALBFv3_RS08495 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.48 RALBFv3_RS03530 uracil phosphoribosyltransferase low > 76
Ralstonia solanacearum PSI07 0.33 RPSI07_RS08730 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.48 RPSI07_RS13695 uracil phosphoribosyltransferase low > 81
Parabacteroides merdae CL09T00C40 0.33 HMPREF1078_RS04125 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.23 HMPREF1078_RS00655 uracil phosphoribosyltransferase low > 61
Variovorax sp. OAS795 0.33 ABID97_RS00285 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.51 ABID97_RS16850 uracil phosphoribosyltransferase low > 91
Variovorax sp. SCN45 0.33 GFF3735 16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198) 0.49 GFF324 Uracil phosphoribosyltransferase (EC 2.4.2.9) low > 127
Ralstonia solanacearum GMI1000 0.33 RS_RS16360 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.48 RS_RS10980 uracil phosphoribosyltransferase low > 80
Ralstonia sp. UNC404CL21Col 0.33 ABZR87_RS03815 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.46 ABZR87_RS15395 uracil phosphoribosyltransferase low > 80
Caulobacter crescentus NA1000 Δfur 0.32 CCNA_00143 ribosomal RNA small subunit methyltransferase I 0.52 CCNA_02351 uracil phosphoribosyltransferase low > 67
Caulobacter crescentus NA1000 0.32 CCNA_00143 ribosomal RNA small subunit methyltransferase I 0.52 CCNA_02351 uracil phosphoribosyltransferase low > 66
Hydrogenophaga sp. GW460-11-11-14-LB1 0.32 GFF2715 rRNA small subunit methyltransferase I 0.50 GFF1179 Uracil phosphoribosyltransferase (EC 2.4.2.9) low > 90
Rhodospirillum rubrum S1H 0.32 Rru_A3693 Protein of unknown function UPF0011 (NCBI) 0.46 Rru_A2255 Uracil phosphoribosyl transferase (NCBI) low > 58
Bifidobacterium breve UCC2003 0.32 BBR_RS19915 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.40 BBR_RS19680 uracil phosphoribosyltransferase low > 34
Phaeobacter inhibens DSM 17395 0.28 PGA1_c26730 probable S-adenosylmethionine-dependent methyltransferase, YraL family 0.53 PGA1_c11960 uracil phosphoribosyltransferase Upp low > 62

Not shown: 7 genomes with orthologs for CSW01_03090 only; 17 genomes with orthologs for CSW01_11345 only