Conservation of cofitness between CSW01_15330 and CSW01_09240 in Vibrio cholerae E7946 ATCC 55056

101 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_15330 glycine dehydrogenase (decarboxylating) 1.0 CSW01_09240 Holliday junction branch migration DNA helicase RuvB 0.70 14
Alteromonas macleodii MIT1002 0.63 MIT1002_02971 Glycine dehydrogenase [decarboxylating] 0.81 MIT1002_01333 Holliday junction ATP-dependent DNA helicase RuvB
Pseudomonas sp. S08-1 0.60 OH686_11165 glycine dehydrogenase 0.75 OH686_19135 Holliday junction DNA helicase RuvB low > 80
Dechlorosoma suillum PS 0.60 Dsui_2737 glycine dehydrogenase, decarboxylating 0.74 Dsui_0484 Holliday junction DNA helicase, RuvB subunit
Pseudomonas stutzeri RCH2 0.60 Psest_0183 glycine dehydrogenase (decarboxylating) 0.74 Psest_1497 Holliday junction DNA helicase, RuvB subunit
Klebsiella pneumoniae MKP103 0.59 KDGMDA_04370 aminomethyl-transferring glycine dehydrogenase 0.80 KDGMDA_25410 Holliday junction branch migration DNA helicase RuvB low > 95
Pseudomonas segetis P6 0.59 ACVTMO_RS22225 gcvP aminomethyl-transferring glycine dehydrogenase 0.74 ACVTMO_RS08360 ruvB Holliday junction branch migration DNA helicase RuvB low > 75
Enterobacter asburiae PDN3 0.59 EX28DRAFT_2955 glycine dehydrogenase (decarboxylating) 0.79 EX28DRAFT_0696 Holliday junction DNA helicase subunit RuvB
Pantoea sp. MT58 0.59 IAI47_03775 aminomethyl-transferring glycine dehydrogenase 0.80 IAI47_08450 Holliday junction branch migration DNA helicase RuvB low > 76
Klebsiella michiganensis M5al 0.59 BWI76_RS23870 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) 0.80 BWI76_RS18145 Holliday junction branch migration DNA helicase RuvB
Pantoea agglomerans CFBP13505 P0401 0.59 PagCFBP13505_RS15925 aminomethyl-transferring glycine dehydrogenase 0.81 PagCFBP13505_RS02330 Holliday junction branch migration DNA helicase RuvB
Pseudomonas fluorescens FW300-N1B4 0.59 Pf1N1B4_2236 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) 0.75 Pf1N1B4_637 Holliday junction DNA helicase RuvB
Kangiella aquimarina DSM 16071 0.59 B158DRAFT_0545 glycine dehydrogenase (decarboxylating) 0.77 B158DRAFT_1136 Holliday junction DNA helicase subunit RuvB
Enterobacter sp. TBS_079 0.59 MPMX20_03762 Glycine dehydrogenase (decarboxylating) 0.80 MPMX20_02766 Holliday junction ATP-dependent DNA helicase RuvB low > 85
Pseudomonas sp. BP01 0.59 JOY50_RS22405 gcvP aminomethyl-transferring glycine dehydrogenase 0.73 JOY50_RS01815 ruvB Holliday junction branch migration DNA helicase RuvB low > 84
Escherichia coli HS(pFamp)R (ATCC 700891) 0.59 OHPLBJKB_00812 Glycine dehydrogenase (decarboxylating) 0.79 OHPLBJKB_01868 Holliday junction ATP-dependent DNA helicase RuvB
Escherichia coli ECOR27 0.59 NOLOHH_11445 gcvP aminomethyl-transferring glycine dehydrogenase 0.79 NOLOHH_16730 ruvB Holliday junction branch migration DNA helicase RuvB
Escherichia coli Nissle 1917 0.59 ECOLIN_RS16165 aminomethyl-transferring glycine dehydrogenase 0.79 ECOLIN_RS10360 Holliday junction branch migration DNA helicase RuvB
Escherichia coli ECOR38 0.59 HEPCGN_18820 gcvP aminomethyl-transferring glycine dehydrogenase 0.79 HEPCGN_04695 ruvB Holliday junction branch migration DNA helicase RuvB low > 88
Escherichia coli ECRC98 0.59 JDDGAC_23170 gcvP aminomethyl-transferring glycine dehydrogenase 0.79 JDDGAC_00860 ruvB Holliday junction branch migration DNA helicase RuvB
Escherichia fergusonii Becca 0.59 EFB2_00999 Glycine dehydrogenase (decarboxylating) 0.79 EFB2_02082 Holliday junction ATP-dependent DNA helicase RuvB
Escherichia coli ECRC100 0.59 OKFHMN_19530 gcvP aminomethyl-transferring glycine dehydrogenase 0.79 OKFHMN_26285 ruvB Holliday junction branch migration DNA helicase RuvB
Escherichia coli ECRC99 0.59 KEDOAH_08610 gcvP aminomethyl-transferring glycine dehydrogenase 0.79 KEDOAH_01820 ruvB Holliday junction branch migration DNA helicase RuvB
Escherichia coli BW25113 0.59 b2903 gcvP glycine dehydrogenase (NCBI) 0.79 b1860 ruvB Holliday junction DNA helicase B (NCBI) low > 76
Escherichia coli ECRC101 0.59 MCAODC_10050 gcvP aminomethyl-transferring glycine dehydrogenase 0.79 MCAODC_19120 ruvB Holliday junction branch migration DNA helicase RuvB
Escherichia coli ECRC102 0.59 NIAGMN_17295 gcvP aminomethyl-transferring glycine dehydrogenase 0.79 NIAGMN_01775 ruvB Holliday junction branch migration DNA helicase RuvB
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.59 GFF3003 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) 0.79 GFF1639 Holliday junction DNA helicase RuvB
Escherichia coli ECRC62 0.59 BNILDI_09980 gcvP aminomethyl-transferring glycine dehydrogenase 0.79 BNILDI_15520 ruvB Holliday junction branch migration DNA helicase RuvB low > 75
Escherichia coli BL21 0.59 ECD_02735 glycine decarboxylase, PLP-dependent, subunit P of glycine cleavage complex 0.79 ECD_01831 ATP-dependent DNA helicase, component of RuvABC resolvasome
Shewanella loihica PV-4 0.59 Shew_3062 glycine dehydrogenase (RefSeq) 0.75 Shew_2075 ruvB Holliday junction DNA helicase B (RefSeq) low > 60
Erwinia amylovora T8 0.59 OLJFJH_08785 aminomethyl-transferring glycine dehydrogenase 0.81 OLJFJH_12860 Holliday junction branch migration DNA helicase RuvB
Shewanella sp. ANA-3 0.58 Shewana3_3499 glycine dehydrogenase (RefSeq) 0.77 Shewana3_1957 ruvB Holliday junction DNA helicase RuvB (RefSeq)
Pseudomonas putida KT2440 0.58 PP_5192 glycine dehydrogenase 0.73 PP_1217 Holliday junction ATP-dependent DNA helicase RuvB low > 96
Shewanella oneidensis MR-1 0.58 SO0781 gcvP glycine cleavage system P protein (NCBI ptt file) 0.77 SO2429 ruvB Holliday junction DNA helicase RuvB (NCBI ptt file) low > 76
Pseudomonas sp. DMC3 0.58 GFF308 Glycine dehydrogenase (decarboxylating) 0.75 GFF5184 Holliday junction ATP-dependent DNA helicase RuvB low > 89
Pseudomonas fluorescens GW456-L13 0.58 PfGW456L13_904 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) 0.75 PfGW456L13_1853 Holliday junction DNA helicase RuvB low > 87
Pseudomonas sp. SVBP6 0.58 COO64_RS00950 gcvP aminomethyl-transferring glycine dehydrogenase 0.74 COO64_RS20100 ruvB Holliday junction branch migration DNA helicase RuvB low > 93
Pseudomonas fluorescens FW300-N2E3 0.58 AO353_08720 glycine dehydrogenase 0.75 AO353_03580 ATP-dependent DNA helicase RuvB low > 101
Paraburkholderia bryophila 376MFSha3.1 0.58 H281DRAFT_02409 glycine dehydrogenase 0.72 H281DRAFT_04255 Holliday junction DNA helicase subunit RuvB
Serratia liquefaciens MT49 0.58 IAI46_20850 aminomethyl-transferring glycine dehydrogenase 0.81 IAI46_14620 Holliday junction branch migration DNA helicase RuvB
Dickeya dianthicola 67-19 0.58 HGI48_RS03400 aminomethyl-transferring glycine dehydrogenase 0.81 HGI48_RS10115 Holliday junction branch migration DNA helicase RuvB
Dickeya dadantii 3937 0.58 DDA3937_RS03255 aminomethyl-transferring glycine dehydrogenase 0.81 DDA3937_RS10085 Holliday junction branch migration DNA helicase RuvB
Dickeya dianthicola ME23 0.58 DZA65_RS03445 aminomethyl-transferring glycine dehydrogenase 0.81 DZA65_RS10530 Holliday junction branch migration DNA helicase RuvB
Shewanella amazonensis SB2B 0.58 Sama_2719 glycine dehydrogenase (RefSeq) 0.76 Sama_1839 ruvB Holliday junction DNA helicase RuvB (RefSeq) low > 62
Paraburkholderia graminis OAS925 0.58 ABIE53_000238 glycine dehydrogenase 0.72 ABIE53_003495 Holliday junction DNA helicase RuvB low > 113
Burkholderia phytofirmans PsJN 0.58 BPHYT_RS19330 glycine cleavage system P protein (EC 1.4.4.2) (from data) 0.72 BPHYT_RS16620 holliday junction ATP-dependent DNA helicase RuvB
Pectobacterium carotovorum WPP14 0.58 HER17_RS17995 aminomethyl-transferring glycine dehydrogenase 0.81 HER17_RS11840 Holliday junction branch migration DNA helicase RuvB low > 75
Rahnella sp. WP5 0.58 EX31_RS21520 aminomethyl-transferring glycine dehydrogenase 0.82 EX31_RS11670 Holliday junction branch migration DNA helicase RuvB
Erwinia tracheiphila SCR3 0.58 LU632_RS05915 gcvP aminomethyl-transferring glycine dehydrogenase 0.81 LU632_RS13410 ruvB Holliday junction branch migration DNA helicase RuvB
Erwinia tracheiphila HP pepo 2.2 0.58 IJEDHG_03250 gcvP aminomethyl-transferring glycine dehydrogenase 0.81 IJEDHG_22140 ruvB Holliday junction branch migration DNA helicase RuvB
Dyella japonica UNC79MFTsu3.2 0.57 ABZR86_RS08305 aminomethyl-transferring glycine dehydrogenase 0.67 ABZR86_RS10830 Holliday junction branch migration DNA helicase RuvB low > 74
Pseudomonas aeruginosa PA14 0.57 IKLFDK_27405 aminomethyl-transferring glycine dehydrogenase 0.75 IKLFDK_04375 Holliday junction branch migration DNA helicase RuvB
Rhodopseudomonas palustris CGA009 0.57 TX73_019935 aminomethyl-transferring glycine dehydrogenase 0.60 TX73_005665 Holliday junction branch migration DNA helicase RuvB
Pseudomonas fluorescens SBW25-INTG 0.57 PFLU_RS24000 aminomethyl-transferring glycine dehydrogenase 0.75 PFLU_RS24085 Holliday junction branch migration DNA helicase RuvB low > 109
Pseudomonas fluorescens SBW25 0.57 PFLU_RS24000 aminomethyl-transferring glycine dehydrogenase 0.75 PFLU_RS24085 Holliday junction branch migration DNA helicase RuvB low > 109
Pseudomonas aeruginosa PUPa3 0.57 DQ20_RS50180 gcvP;go_function=glycine aminomethyl-transferring glycine dehydrogenase 0.75 DQ20_RS45195 ruvB;go_function=DNA Holliday junction branch migration DNA helicase RuvB low > 101
Ralstonia solanacearum UW163 0.57 UW163_RS04950 glycine dehydrogenase (aminomethyl-transferring) 0.71 UW163_RS01920 Holliday junction branch migration DNA helicase RuvB
Pseudomonas aeruginosa MRSN321 0.57 DY961_RS11935 gcvP;go_function=glycine aminomethyl-transferring glycine dehydrogenase 0.75 DY961_RS07595 ruvB;go_function=DNA Holliday junction branch migration DNA helicase RuvB low > 100
Ralstonia solanacearum IBSBF1503 0.57 RALBFv3_RS08660 glycine dehydrogenase (aminomethyl-transferring) 0.71 RALBFv3_RS11665 Holliday junction branch migration DNA helicase RuvB
Paraburkholderia sabiae LMG 24235 0.57 QEN71_RS29215 aminomethyl-transferring glycine dehydrogenase 0.73 QEN71_RS26800 Holliday junction branch migration DNA helicase RuvB
Ralstonia solanacearum PSI07 0.57 RPSI07_RS08575 glycine dehydrogenase (aminomethyl-transferring) 0.71 RPSI07_RS21555 Holliday junction branch migration DNA helicase RuvB
Pseudomonas lactucae CFBP13502 0.57 GEMAOFIL_04608 Glycine dehydrogenase (decarboxylating) 0.75 GEMAOFIL_04641 Holliday junction ATP-dependent DNA helicase RuvB low > 96
Pseudomonas orientalis W4I3 0.57 QF045_RS24485 aminomethyl-transferring glycine dehydrogenase 0.75 QF045_RS24610 Holliday junction branch migration DNA helicase RuvB low > 93
Pseudomonas simiae WCS417 0.57 PS417_22360 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) 0.75 PS417_22445 ATP-dependent DNA helicase RuvB low > 88
Rhodanobacter denitrificans MT42 0.56 LRK55_RS00260 aminomethyl-transferring glycine dehydrogenase 0.67 LRK55_RS04680 Holliday junction branch migration DNA helicase RuvB
Ralstonia sp. UNC404CL21Col 0.56 ABZR87_RS03935 aminomethyl-transferring glycine dehydrogenase 0.71 ABZR87_RS07620 Holliday junction branch migration DNA helicase RuvB low > 80
Pseudomonas fluorescens FW300-N2C3 0.56 AO356_18170 glycine dehydrogenase 0.74 AO356_18025 ATP-dependent DNA helicase RuvB low > 104
Pseudomonas fluorescens FW300-N2E2 0.56 Pf6N2E2_5558 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) 0.74 Pf6N2E2_5537 Holliday junction DNA helicase RuvB
Pseudomonas sp. RS175 0.56 PFR28_03383 Glycine dehydrogenase (decarboxylating) 0.75 PFR28_03412 Holliday junction ATP-dependent DNA helicase RuvB low > 88
Variovorax sp. SCN45 0.56 GFF6478 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) 0.70 GFF2090 Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) low > 127
Cupriavidus basilensis FW507-4G11 0.56 RR42_RS20070 glycine dehydrogenase 0.73 RR42_RS02700 ATP-dependent DNA helicase RuvB
Pseudomonas syringae pv. syringae B728a ΔmexB 0.56 Psyr_1096 glycine dehydrogenase (decarboxylating) alpha subunit / glycine dehydrogenase (decarboxylating) beta subunit 0.75 Psyr_1410 Holliday junction DNA helicase RuvB low > 86
Pseudomonas syringae pv. syringae B728a 0.56 Psyr_1096 glycine dehydrogenase (decarboxylating) alpha subunit / glycine dehydrogenase (decarboxylating) beta subunit 0.75 Psyr_1410 Holliday junction DNA helicase RuvB low > 86
Rhodanobacter denitrificans FW104-10B01 0.56 LRK54_RS00520 aminomethyl-transferring glycine dehydrogenase 0.67 LRK54_RS04900 Holliday junction branch migration DNA helicase RuvB
Ralstonia solanacearum GMI1000 0.56 RS_RS16510 glycine dehydrogenase 0.71 RS_RS02485 Holliday junction branch migration DNA helicase RuvB
Phaeobacter inhibens DSM 17395 0.56 PGA1_78p00310 glycine dehydrogenase 0.58 PGA1_c05870 holliday junction ATP-dependent DNA helicase RuvB
Variovorax sp. OAS795 0.56 ABID97_RS19655 aminomethyl-transferring glycine dehydrogenase 0.69 ABID97_RS24875 Holliday junction branch migration DNA helicase RuvB
Xanthomonas campestris pv. campestris strain 8004 0.55 Xcc-8004.3878.1 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) 0.68 Xcc-8004.1439.1 Holliday junction DNA helicase RuvB
Lysobacter sp. OAE881 0.55 ABIE51_RS14345 aminomethyl-transferring glycine dehydrogenase 0.68 ABIE51_RS05055 Holliday junction branch migration DNA helicase RuvB
Dinoroseobacter shibae DFL-12 0.55 Dshi_2680 glycine dehydrogenase (RefSeq) 0.57 Dshi_1105 Holliday junction DNA helicase RuvB (RefSeq)
Rhodanobacter sp. FW510-T8 0.55 OKGIIK_06740 gcvP2 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain 0.66 OKGIIK_01850 ruvB Holliday junction branch migration DNA helicase RuvB
Synechocystis sp000284455 PCC 6803 0.55 SGL_RS11955 aminomethyl-transferring glycine dehydrogenase 0.52 SGL_RS14255 Holliday junction branch migration DNA helicase RuvB
Sinorhizobium meliloti 1021 0.55 SMc02049 glycine dehydrogenase 0.61 SMc03965 Holliday junction DNA helicase RuvB
Echinicola vietnamensis KMM 6221, DSM 17526 0.55 Echvi_0744 glycine dehydrogenase (decarboxylating) 0.57 Echvi_0825 Holliday junction DNA helicase, RuvB subunit low > 79
Mucilaginibacter yixingensis YX-36 DSM 26809 0.55 ABZR88_RS01785 aminomethyl-transferring glycine dehydrogenase 0.58 ABZR88_RS07990 Holliday junction branch migration DNA helicase RuvB low > 71
Pontibacter actiniarum KMM 6156, DSM 19842 0.55 CA264_18410 glycine dehydrogenase (aminomethyl-transferring) 0.59 CA264_19800 Holliday junction branch migration DNA helicase RuvB
Pedobacter sp. GW460-11-11-14-LB5 0.55 CA265_RS25185 glycine dehydrogenase (aminomethyl-transferring) 0.57 CA265_RS07710 Holliday junction branch migration DNA helicase RuvB low > 88
Agrobacterium fabrum C58 0.54 Atu1462 glycine cleavage system protein P2 0.60 Atu3722 Holliday junction DNA helicase RuvB
Castellaniella sp019104865 MT123 0.54 ABCV34_RS08835 aminomethyl-transferring glycine dehydrogenase 0.71 ABCV34_RS07990 Holliday junction branch migration DNA helicase RuvB
Rhizobium sp. OAE497 0.54 ABIE40_RS09950 aminomethyl-transferring glycine dehydrogenase 0.59 ABIE40_RS15760 Holliday junction branch migration DNA helicase RuvB low > 107
Rhodanobacter sp000427505 FW510-R12 0.54 LRK53_RS09610 aminomethyl-transferring glycine dehydrogenase 0.67 LRK53_RS05130 Holliday junction branch migration DNA helicase RuvB
Hydrogenophaga sp. GW460-11-11-14-LB1 0.54 GFF5215 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) 0.70 GFF1665 Holliday junction DNA helicase RuvB
Acidovorax sp. GW101-3H11 0.54 Ac3H11_167 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) 0.70 Ac3H11_4685 Holliday junction DNA helicase RuvB
Synechococcus elongatus PCC 7942 0.53 Synpcc7942_2047 gcvP glycine dehydrogenase 0.56 Synpcc7942_0835 ruvB Holliday junction DNA helicase B
Mycobacterium tuberculosis H37Rv 0.51 Rv1832 Probable glycine dehydrogenase GcvB (glycine decarboxylase) (glycine cleavage system P-protein) 0.54 Rv2592c Probable holliday junction DNA helicase RuvB
Cellulophaga baltica 18 0.50 M666_RS01560 aminomethyl-transferring glycine dehydrogenase 0.58 M666_RS07660 Holliday junction branch migration DNA helicase RuvB low > 67
Bacteroides ovatus ATCC 8483 0.49 BACOVA_04038 glycine dehydrogenase 0.57 BACOVA_00895 Holliday junction DNA helicase RuvB
Bacteroides thetaiotaomicron VPI-5482 0.48 BT1147 glycine dehydrogenase [decarboxylating] (NCBI ptt file) 0.57 BT3285 Holliday junction DNA helicase ruvB (NCBI ptt file)
Bacteroides stercoris CC31F 0.47 HMPREF1181_RS16815 aminomethyl-transferring glycine dehydrogenase 0.57 HMPREF1181_RS02130 Holliday junction branch migration DNA helicase RuvB low > 56
Phocaeicola dorei CL03T12C01 0.47 ABI39_RS15100 aminomethyl-transferring glycine dehydrogenase 0.57 ABI39_RS04970 Holliday junction branch migration DNA helicase RuvB low > 72
Phocaeicola vulgatus CL09T03C04 0.47 HMPREF1058_RS18780 aminomethyl-transferring glycine dehydrogenase 0.57 HMPREF1058_RS11890 Holliday junction branch migration DNA helicase RuvB low > 67
Parabacteroides merdae CL09T00C40 0.46 HMPREF1078_RS15115 aminomethyl-transferring glycine dehydrogenase 0.57 HMPREF1078_RS06175 Holliday junction branch migration DNA helicase RuvB low > 61

Not shown: 0 genomes with orthologs for CSW01_15330 only; 20 genomes with orthologs for CSW01_09240 only