Conservation of cofitness between CSW01_00560 and CSW01_02490 in Vibrio cholerae E7946 ATCC 55056

105 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_00560 DNA polymerase I 1.0 CSW01_02490 glutathione synthetase 0.89 7
Serratia liquefaciens MT49 0.66 IAI46_24985 DNA polymerase I 0.80 IAI46_21390 glutathione synthase low > 87
Rahnella sp. WP5 0.65 EX31_RS15905 DNA polymerase I 0.77 EX31_RS02665 glutathione synthase low > 89
Pectobacterium carotovorum WPP14 0.65 HER17_RS21470 DNA polymerase I 0.78 HER17_RS02635 glutathione synthase — —
Pantoea sp. MT58 0.65 IAI47_00430 DNA polymerase I 0.74 IAI47_03615 glutathione synthase low > 76
Pantoea agglomerans CFBP13505 P0401 0.64 PagCFBP13505_RS18920 DNA polymerase I 0.75 PagCFBP13505_RS16080 glutathione synthase low > 74
Erwinia amylovora T8 0.64 OLJFJH_05470 DNA polymerase I 0.76 OLJFJH_08570 glutathione synthase low > 58
Escherichia coli ECOR38 0.64 HEPCGN_12785 polA DNA polymerase I 0.76 HEPCGN_18580 gshB glutathione synthase — —
Enterobacter asburiae PDN3 0.64 EX28DRAFT_4343 DNA polymerase I (EC 2.7.7.7) 0.75 EX28DRAFT_2985 glutathione synthase (EC 6.3.2.3) — —
Escherichia coli BL21 0.64 ECD_03749 5 0.76 ECD_02777 glutathione synthetase — —
Escherichia coli ECRC101 0.64 MCAODC_04650 polA DNA polymerase I 0.76 MCAODC_09795 gshB glutathione synthase — —
Escherichia coli ECRC99 0.64 KEDOAH_14000 polA DNA polymerase I 0.76 KEDOAH_08865 gshB glutathione synthase — —
Escherichia coli ECRC100 0.64 OKFHMN_14150 polA DNA polymerase I 0.76 OKFHMN_19275 gshB glutathione synthase — —
Escherichia coli ECOR27 0.64 NOLOHH_06280 polA DNA polymerase I 0.76 NOLOHH_11145 gshB glutathione synthase — —
Escherichia coli Nissle 1917 0.64 ECOLIN_RS22270 DNA polymerase I 0.76 ECOLIN_RS16395 glutathione synthase — —
Escherichia coli BW25113 0.64 b3863 polA DNA polymerase I (NCBI) 0.76 b2947 gshB glutathione synthetase (NCBI) low > 76
Escherichia coli ECRC98 0.64 JDDGAC_17775 polA DNA polymerase I 0.76 JDDGAC_22905 gshB glutathione synthase — —
Escherichia fergusonii Becca 0.64 EFB2_04753 DNA polymerase I 0.76 EFB2_00955 Glutathione synthetase — —
Escherichia coli ECRC102 0.64 NIAGMN_11905 polA DNA polymerase I 0.76 NIAGMN_17040 gshB glutathione synthase — —
Escherichia coli ECRC62 0.64 BNILDI_05250 polA DNA polymerase I 0.76 BNILDI_09725 gshB glutathione synthase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.64 OHPLBJKB_04189 DNA polymerase I 0.76 OHPLBJKB_00771 Glutathione synthetase — —
Erwinia tracheiphila SCR3 0.64 LU632_RS23870 polA DNA polymerase I 0.75 LU632_RS05480 gshB glutathione synthase — —
Erwinia tracheiphila HP pepo 2.2 0.64 IJEDHG_10990 polA DNA polymerase I 0.75 IJEDHG_03430 gshB glutathione synthase — —
Enterobacter sp. TBS_079 0.64 MPMX20_04601 DNA polymerase I 0.76 MPMX20_03805 Glutathione synthetase low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.63 GFF2216 DNA polymerase I (EC 2.7.7.7) 0.76 GFF3049 Glutathione synthetase (EC 6.3.2.3) low > 78
Klebsiella michiganensis M5al 0.63 BWI76_RS00355 DNA polymerase I 0.75 BWI76_RS24075 glutathione synthase low > 92
Klebsiella pneumoniae MKP103 0.63 KDGMDA_08970 DNA polymerase I 0.75 KDGMDA_04590 glutathione synthase — —
Dickeya dadantii 3937 0.63 DDA3937_RS00105 DNA polymerase I 0.77 DDA3937_RS18560 glutathione synthase — —
Shewanella loihica PV-4 0.63 Shew_3714 DNA polymerase I (RefSeq) 0.73 Shew_3225 glutathione synthetase (RefSeq) low > 60
Dickeya dianthicola 67-19 0.63 HGI48_RS21260 DNA polymerase I 0.76 HGI48_RS18495 glutathione synthase — —
Shewanella amazonensis SB2B 0.63 Sama_0093 DNA-directed DNA polymerase (RefSeq) 0.71 Sama_0574 glutathione synthetase (RefSeq) low > 62
Shewanella sp. ANA-3 0.62 Shewana3_4109 DNA polymerase I (RefSeq) 0.71 Shewana3_3445 glutathione synthetase (RefSeq) — —
Dickeya dianthicola ME23 0.62 DZA65_RS22235 DNA polymerase I 0.76 DZA65_RS19630 glutathione synthase — —
Shewanella oneidensis MR-1 0.62 SO4669 polA DNA polymerase I (NCBI ptt file) 0.70 SO0831 gshB glutathione synthetase (NCBI ptt file) — —
Alteromonas macleodii MIT1002 0.62 MIT1002_00014 DNA polymerase I 0.62 MIT1002_03055 Glutathione synthetase low > 70
Kangiella aquimarina DSM 16071 0.59 B158DRAFT_0499 DNA polymerase I (EC 2.7.7.7) 0.59 B158DRAFT_0189 glutathione synthase (EC 6.3.2.3) — —
Pseudomonas stutzeri RCH2 0.58 Psest_4219 DNA polymerase I 0.61 Psest_0296 glutathione synthetase, prokaryotic low > 67
Pseudomonas aeruginosa PA14 0.58 IKLFDK_25945 DNA polymerase I 0.64 IKLFDK_23385 glutathione synthase low > 98
Pseudomonas sp. BP01 0.58 JOY50_RS21110 polA DNA polymerase I 0.65 JOY50_RS09725 gshB glutathione synthase low > 84
Pseudomonas putida KT2440 0.58 PP_0123 DNA polymerase I, 5 0.66 PP_4993 Glutathione synthetase low > 96
Pseudomonas aeruginosa PUPa3 0.58 DQ20_RS58195 polA;go_function=nucleic DNA polymerase I 0.64 DQ20_RS37285 gshB;go_function=glutathione glutathione synthase 0.36 75
Pseudomonas aeruginosa MRSN321 0.58 DY961_RS25765 polA;go_function=nucleic DNA polymerase I 0.64 DY961_RS22015 gshB;go_function=glutathione glutathione synthase low > 100
Pseudomonas sp. SVBP6 0.57 COO64_RS02475 polA DNA polymerase I 0.65 COO64_RS13605 gshB glutathione synthase low > 93
Pseudomonas sp. S08-1 0.57 OH686_12215 DNA polymerase I 0.65 OH686_10915 glutathione synthase low > 80
Pseudomonas segetis P6 0.57 MPMX49_00321 DNA polymerase I 0.65 MPMX49_00625 Glutathione synthetase low > 75
Pseudomonas simiae WCS417 0.56 PS417_00405 DNA polymerase I 0.63 PS417_26675 glutathione synthetase — —
Pseudomonas orientalis W4I3 0.56 QF045_RS03350 DNA polymerase I 0.62 QF045_RS01075 glutathione synthase low > 93
Pseudomonas fluorescens FW300-N2E3 0.56 AO353_10930 DNA polymerase I 0.64 AO353_08110 glutathione synthetase low > 101
Pseudomonas sp. DMC3 0.55 GFF631 DNA polymerase I 0.65 GFF199 Glutathione synthetase low > 89
Pseudomonas lactucae CFBP13502 0.55 GEMAOFIL_00284 DNA polymerase I 0.64 GEMAOFIL_05472 Glutathione synthetase low > 96
Pseudomonas fluorescens SBW25 0.55 PFLU_RS00395 DNA polymerase I 0.63 PFLU_RS28320 glutathione synthase low > 109
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS00395 DNA polymerase I 0.63 PFLU_RS28320 glutathione synthase low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.55 Psyr_0270 DNA polymerase I 0.67 Psyr_0487 glutathione synthase low > 86
Pseudomonas syringae pv. syringae B728a 0.55 Psyr_0270 DNA polymerase I 0.67 Psyr_0487 glutathione synthase low > 86
Pseudomonas fluorescens FW300-N1B4 0.55 Pf1N1B4_1875 DNA polymerase I (EC 2.7.7.7) 0.64 Pf1N1B4_2352 Glutathione synthetase (EC 6.3.2.3) — —
Pseudomonas fluorescens FW300-N2C3 0.55 AO356_11465 DNA polymerase I 0.65 AO356_13475 glutathione synthetase low > 104
Pseudomonas fluorescens GW456-L13 0.54 PfGW456L13_594 DNA polymerase I (EC 2.7.7.7) 0.64 PfGW456L13_1021 Glutathione synthetase (EC 6.3.2.3) low > 87
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_4162 DNA polymerase I (EC 2.7.7.7) 0.65 Pf6N2E2_4612 Glutathione synthetase (EC 6.3.2.3) low > 103
Pseudomonas sp. RS175 0.54 PFR28_04624 DNA polymerase I 0.65 PFR28_04232 Glutathione synthetase low > 88
Herbaspirillum seropedicae SmR1 0.53 HSERO_RS02260 DNA polymerase I 0.49 HSERO_RS00435 glutathione synthetase low > 78
Paraburkholderia sabiae LMG 24235 0.52 QEN71_RS17885 DNA polymerase I 0.45 QEN71_RS01415 glutathione synthase — —
Ralstonia sp. UNC404CL21Col 0.52 ABZR87_RS15680 DNA polymerase I 0.48 ABZR87_RS06710 glutathione synthase low > 80
Rhodanobacter sp000427505 FW510-R12 0.52 LRK53_RS01570 DNA polymerase I 0.55 LRK53_RS05725 glutathione synthase low > 59
Ralstonia solanacearum UW163 0.52 UW163_RS09920 DNA polymerase I 0.49 UW163_RS02720 glutathione synthase — —
Ralstonia solanacearum IBSBF1503 0.52 RALBFv3_RS03750 DNA polymerase I 0.49 RALBFv3_RS10860 glutathione synthase low > 76
Dyella japonica UNC79MFTsu3.2 0.52 ABZR86_RS17015 DNA polymerase I 0.53 ABZR86_RS10370 glutathione synthase — —
Dechlorosoma suillum PS 0.52 Dsui_0459 DNA polymerase I 0.48 Dsui_0746 glutathione synthetase low > 51
Marinobacter adhaerens HP15 0.52 HP15_293 DNA polymerase I 0.62 HP15_3512 glutathione synthetase 0.38 19
Rhodanobacter denitrificans MT42 0.52 LRK55_RS06585 DNA polymerase I 0.54 LRK55_RS03970 glutathione synthase — —
Methylophilus sp. DMC18 0.52 GFF1658 DNA polymerase I 0.47 GFF2174 Glutathione synthetase low > 43
Rhodanobacter sp. FW510-T8 0.52 OKGIIK_16785 polA DNA polymerase I 0.55 OKGIIK_11075 gshB glutathione synthase low > 53
Rhodanobacter denitrificans FW104-10B01 0.52 LRK54_RS06840 DNA polymerase I 0.54 LRK54_RS04200 glutathione synthase — —
Ralstonia solanacearum GMI1000 0.52 RS_RS11195 DNA polymerase I 0.48 RS_RS01700 glutathione synthetase low > 80
Ralstonia solanacearum PSI07 0.52 RPSI07_RS13480 DNA polymerase I 0.48 RPSI07_RS22450 glutathione synthase low > 81
Burkholderia phytofirmans PsJN 0.51 BPHYT_RS33610 DNA polymerase I 0.46 BPHYT_RS02560 glutathione synthetase low > 109
Paraburkholderia graminis OAS925 0.51 ABIE53_004852 DNA polymerase-1 0.47 ABIE53_000657 glutathione synthase 0.29 65
Cupriavidus basilensis FW507-4G11 0.51 RR42_RS15050 DNA polymerase I 0.46 RR42_RS01780 glutathione synthetase low > 128
Paraburkholderia bryophila 376MFSha3.1 0.51 H281DRAFT_06022 DNA polymerase I 0.46 H281DRAFT_02010 glutathione synthase low > 103
Lysobacter sp. OAE881 0.49 ABIE51_RS02010 DNA polymerase I 0.56 ABIE51_RS05210 glutathione synthase — —
Xanthomonas campestris pv. campestris strain 8004 0.49 Xcc-8004.5105.1 DNA polymerase I (EC 2.7.7.7) 0.55 Xcc-8004.1501.1 Glutathione synthetase (EC 6.3.2.3) — —
Acidovorax sp. GW101-3H11 0.48 Ac3H11_1648 DNA polymerase I (EC 2.7.7.7) 0.47 Ac3H11_711 Glutathione synthetase (EC 6.3.2.3) — —
Variovorax sp. SCN45 0.48 GFF4006 DNA polymerase I (EC 2.7.7.7) 0.47 GFF6322 Glutathione synthetase (EC 6.3.2.3) 0.83 35
Variovorax sp. OAS795 0.47 ABID97_RS09180 DNA polymerase I 0.49 ABID97_RS04630 glutathione synthase low > 91
Castellaniella sp019104865 MT123 0.47 ABCV34_RS02195 DNA polymerase I 0.46 ABCV34_RS04795 glutathione synthase low > 48
Acinetobacter radioresistens SK82 0.46 MPMX26_00574 DNA polymerase I 0.54 MPMX26_02936 Glutathione synthetase low > 36
Acinetobacter baumannii LAC-4 0.46 RR41_RS15915 DNA polymerase I 0.53 RR41_RS00820 glutathione synthase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.45 GFF5584 DNA polymerase I (EC 2.7.7.7) 0.47 GFF2650 Glutathione synthetase (EC 6.3.2.3) low > 90
Caulobacter crescentus NA1000 0.39 CCNA_03577 DNA polymerase I 0.38 CCNA_00140 glutathione synthetase — —
Caulobacter crescentus NA1000 Δfur 0.39 CCNA_03577 DNA polymerase I 0.38 CCNA_00140 glutathione synthetase — —
Dinoroseobacter shibae DFL-12 0.39 Dshi_2909 DNA polymerase I (RefSeq) 0.36 Dshi_2829 glutathione synthetase (RefSeq) — —
Azospirillum sp. SherDot2 0.39 MPMX19_04869 DNA polymerase I 0.40 MPMX19_02474 Glutathione synthetase — —
Magnetospirillum magneticum AMB-1 0.39 AMB_RS21305 DNA polymerase I 0.40 AMB_RS22800 glutathione synthase — —
Phaeobacter inhibens DSM 17395 0.39 PGA1_c31780 DNA polymerase I 0.41 PGA1_c26710 glutathione synthetase GshB — —
Azospirillum brasilense Sp245 0.38 AZOBR_RS30685 DNA polymerase 0.40 AZOBR_RS02170 glutathione synthetase low > 97
Agrobacterium fabrum C58 0.38 Atu0110 DNA polymerase I 0.38 Atu0310 glutathione synthetase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.38 A4249_RS13840 DNA polymerase I 0.38 A4249_RS14140 glutathione synthase — —
Rhizobium sp. OAE497 0.38 ABIE40_RS00490 DNA polymerase I 0.39 ABIE40_RS01405 glutathione synthase low > 107
Xanthobacter sp. DMC5 0.37 GFF1973 DNA polymerase I 0.39 GFF2245 Glutathione synthetase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.35 CA264_16535 DNA polymerase I 0.23 CA264_17395 glutathione synthetase — —
Sphingomonas koreensis DSMZ 15582 0.35 Ga0059261_2244 DNA polymerase I (EC 2.7.7.7) 0.36 Ga0059261_2757 glutathione synthase (EC 6.3.2.3) — —
Sphingobium sp. HT1-2 0.35 GFF3778 DNA polymerase I (EC 2.7.7.7) 0.36 GFF307 Glutathione synthetase (EC 6.3.2.3) — —
Bosea sp. OAE506 0.34 ABIE41_RS03570 DNA polymerase I 0.36 ABIE41_RS03330 glutathione synthase — —
Rhodospirillum rubrum S1H 0.34 Rru_A3514 DNA polymerase A (NCBI) 0.40 Rru_A3690 Glutathione synthetase (NCBI) — —
Synechococcus elongatus PCC 7942 0.29 Synpcc7942_0194 polA DNA polymerase I 0.36 Synpcc7942_2324 gshB glutathione synthetase — —
Sinorhizobium meliloti 1021 0.29 SMc02850 DNA polymerase I 0.40 SMc00419 glutathione synthetase low > 103
Synechocystis sp000284455 PCC 6803 0.28 SGL_RS16290 DNA polymerase I 0.36 SGL_RS06800 glutathione synthase — —

Not shown: 13 genomes with orthologs for CSW01_00560 only; 1 genomes with orthologs for CSW01_02490 only