Conservation of cofitness between CSW01_12830 and CSW01_01830 in Vibrio cholerae E7946 ATCC 55056

96 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_12830 RNase adaptor protein RapZ 1.0 CSW01_01830 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.65 3
Pantoea agglomerans CFBP13505 P0401 0.61 PagCFBP13505_RS09365 RNase adapter RapZ 0.70 PagCFBP13505_RS11180 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 74
Dickeya dianthicola ME23 0.60 DZA65_RS01495 RNase adapter RapZ 0.69 DZA65_RS19685 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 75
Pantoea sp. MT58 0.60 IAI47_17200 RNase adapter RapZ 0.70 IAI47_02585 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 76
Dickeya dadantii 3937 0.60 DDA3937_RS01515 RNase adapter RapZ 0.70 DDA3937_RS18615 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 74
Dickeya dianthicola 67-19 0.60 HGI48_RS01430 RNase adapter RapZ 0.69 HGI48_RS18550 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 71
Pectobacterium carotovorum WPP14 0.60 HER17_RS20075 RNase adapter RapZ 0.71 HER17_RS02580 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 75
Erwinia tracheiphila SCR3 0.60 LU632_RS21295 rapZ RNase adapter RapZ 0.68 LU632_RS02050 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 74
Erwinia tracheiphila HP pepo 2.2 0.60 IJEDHG_13725 rapZ RNase adapter RapZ 0.67 IJEDHG_06870 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Rahnella sp. WP5 0.60 EX31_RS12385 RNase adapter RapZ 0.70 EX31_RS08825 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 89
Enterobacter asburiae PDN3 0.60 EX28DRAFT_3259 Predicted P-loop-containing kinase 0.71 EX28DRAFT_3368 tRNA dimethylallyltransferase low > 76
Klebsiella michiganensis M5al 0.60 BWI76_RS25280 RNase adaptor protein RapZ 0.73 BWI76_RS02530 tRNA dimethylallyltransferase low > 92
Klebsiella pneumoniae MKP103 0.60 KDGMDA_06095 RNase adapter RapZ 0.73 KDGMDA_11030 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.45 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.60 GFF2949 Hypothetical ATP-binding protein UPF0042, contains P-loop 0.71 GFF824 tRNA dimethylallyltransferase (EC 2.5.1.75) low > 78
Enterobacter sp. TBS_079 0.60 MPMX20_04111 RNase adapter protein RapZ 0.71 MPMX20_00452 tRNA dimethylallyltransferase 0.28 9
Escherichia coli BW25113 0.60 b3205 yhbJ hypothetical protein (NCBI) 0.72 b4171 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) low > 76
Serratia liquefaciens MT49 0.60 IAI46_22485 RNase adapter RapZ 0.70 IAI46_01620 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 86
Escherichia coli BL21 0.60 ECD_03070 adaptor protein for GlmZ/GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase 0.72 ECD_04038 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase low > 61
Escherichia coli ECOR27 0.60 NOLOHH_09725 rapZ RNase adapter RapZ 0.72 NOLOHH_04525 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 76
Escherichia fergusonii Becca 0.60 EFB2_00618 RNase adapter protein RapZ 0.71 EFB2_04364 tRNA dimethylallyltransferase low > 86
Escherichia coli Nissle 1917 0.60 ECOLIN_RS18440 RNase adapter RapZ 0.71 ECOLIN_RS24225 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 55
Escherichia coli ECRC102 0.60 NIAGMN_15685 rapZ RNase adapter RapZ 0.71 NIAGMN_10110 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 80
Escherichia coli ECRC100 0.60 OKFHMN_17925 rapZ RNase adapter RapZ 0.71 OKFHMN_12260 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 79
Escherichia coli ECOR38 0.60 HEPCGN_16800 rapZ RNase adapter RapZ 0.72 HEPCGN_10490 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 88
Escherichia coli HS(pFamp)R (ATCC 700891) 0.60 OHPLBJKB_00495 RNase adapter protein RapZ 0.72 OHPLBJKB_03871 tRNA dimethylallyltransferase — —
Escherichia coli ECRC99 0.60 KEDOAH_10225 rapZ RNase adapter RapZ 0.71 KEDOAH_15895 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Escherichia coli ECRC98 0.60 JDDGAC_21550 rapZ RNase adapter RapZ 0.71 JDDGAC_15900 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 87
Escherichia coli ECRC62 0.60 BNILDI_01810 rapZ RNase adapter RapZ 0.72 BNILDI_06965 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 75
Escherichia coli ECRC101 0.60 MCAODC_08445 rapZ RNase adapter RapZ 0.71 MCAODC_02775 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 88
Erwinia amylovora T8 0.59 OLJFJH_07055 RNase adapter RapZ 0.68 OLJFJH_02505 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 58
Alteromonas macleodii MIT1002 0.57 MIT1002_00824 glmZ(sRNA)-inactivating NTPase 0.57 MIT1002_03789 tRNA dimethylallyltransferase — —
Shewanella amazonensis SB2B 0.57 Sama_3091 hypothetical protein (RefSeq) 0.62 Sama_3026 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) — —
Shewanella sp. ANA-3 0.56 Shewana3_0669 hypothetical protein (RefSeq) 0.63 Shewana3_0596 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) — —
Shewanella oneidensis MR-1 0.56 SO3964 conserved hypothetical protein (NCBI ptt file) 0.65 SO0602 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.55 Shew_3314 hypothetical protein (RefSeq) 0.63 Shew_0565 tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) — —
Marinobacter adhaerens HP15 0.49 HP15_2445 protein yhbJ 0.59 HP15_2500 tRNA delta(2)-isopentenylpyrophosphate transferase — —
Pseudomonas fluorescens FW300-N2C3 0.48 AO356_07050 glmZ(sRNA)-inactivating NTPase 0.63 AO356_08660 tRNA dimethylallyltransferase low > 104
Pseudomonas fluorescens FW300-N2E2 0.48 Pf6N2E2_3270 Hypothetical ATP-binding protein UPF0042, contains P-loop 0.63 Pf6N2E2_3615 tRNA dimethylallyltransferase (EC 2.5.1.75) — —
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_05195 glmZ(sRNA)-inactivating NTPase 0.62 AO353_13140 tRNA dimethylallyltransferase 0.43 20
Pseudomonas fluorescens FW300-N1B4 0.47 Pf1N1B4_1083 Hypothetical ATP-binding protein UPF0042, contains P-loop 0.62 Pf1N1B4_1413 tRNA dimethylallyltransferase (EC 2.5.1.75) — —
Pseudomonas sp. S08-1 0.47 OH686_08560 RNase adapter protein RapZ 0.57 OH686_09475 tRNA dimethylallyltransferase low > 80
Pseudomonas sp. DMC3 0.47 GFF1825 RNase adapter protein RapZ 0.64 GFF3219 tRNA dimethylallyltransferase low > 89
Pseudomonas fluorescens GW456-L13 0.47 PfGW456L13_5017 Hypothetical ATP-binding protein UPF0042, contains P-loop 0.62 PfGW456L13_155 tRNA dimethylallyltransferase (EC 2.5.1.75) low > 87
Pseudomonas lactucae CFBP13502 0.47 GEMAOFIL_01072 RNase adapter protein RapZ 0.60 GEMAOFIL_00735 tRNA dimethylallyltransferase low > 93
Pseudomonas sp. SVBP6 0.47 COO64_RS04270 rapZ RNase adapter RapZ 0.60 COO64_RS17895 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 93
Pseudomonas sp. RS175 0.47 PFR28_00170 RNase adapter protein RapZ 0.62 PFR28_05120 tRNA dimethylallyltransferase low > 88
Pseudomonas aeruginosa PA14 0.46 IKLFDK_01755 RNase adapter RapZ 0.55 IKLFDK_28815 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 100
Pseudomonas segetis P6 0.46 MPMX49_03861 RNase adapter protein RapZ 0.58 MPMX49_04154 tRNA dimethylallyltransferase — —
Pseudomonas fluorescens SBW25-INTG 0.46 PFLU_RS04385 RNase adapter RapZ 0.60 PFLU_RS02565 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 109
Pseudomonas fluorescens SBW25 0.46 PFLU_RS04385 RNase adapter RapZ 0.60 PFLU_RS02565 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 109
Pseudomonas simiae WCS417 0.46 PS417_04330 glmZ(sRNA)-inactivating NTPase 0.60 PS417_02485 tRNA delta(2)-isopentenylpyrophosphate transferase — —
Kangiella aquimarina DSM 16071 0.46 B158DRAFT_2077 Predicted P-loop-containing kinase 0.60 B158DRAFT_1951 tRNA dimethylallyltransferase low > 40
Pseudomonas putida KT2440 0.46 PP_0949 putative ATP-binding protein UPF0042 0.58 PP_4895 tRNA dimethylallyltransferase low > 96
Pseudomonas sp. BP01 0.45 JOY50_RS11115 rapZ RNase adapter RapZ 0.59 JOY50_RS17225 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.45 GFF828 Hypothetical ATP-binding protein UPF0042, contains P-loop 0.46 GFF5491 tRNA dimethylallyltransferase (EC 2.5.1.75) low > 90
Pseudomonas syringae pv. syringae B728a ΔmexB 0.45 Psyr_4150 Uncharacterized P-loop ATPase protein UPF0042 0.62 Psyr_0571 tRNA isopentenyltransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.45 Psyr_4150 Uncharacterized P-loop ATPase protein UPF0042 0.62 Psyr_0571 tRNA isopentenyltransferase low > 86
Herbaspirillum seropedicae SmR1 0.45 HSERO_RS19535 nucleotide-binding protein 0.51 HSERO_RS04185 tRNA delta(2)-isopentenylpyrophosphate transferase — —
Methylophilus sp. DMC18 0.44 GFF2266 RNase adapter protein RapZ 0.50 GFF683 tRNA dimethylallyltransferase low > 43
Pseudomonas stutzeri RCH2 0.44 Psest_3316 Predicted P-loop-containing kinase 0.58 Psest_0682 tRNA dimethylallyltransferase — —
Acidovorax sp. GW101-3H11 0.44 Ac3H11_3459 Hypothetical ATP-binding protein UPF0042, contains P-loop 0.47 Ac3H11_319 tRNA dimethylallyltransferase (EC 2.5.1.75) low > 79
Lysobacter sp. OAE881 0.44 ABIE51_RS15975 RNase adapter RapZ 0.47 ABIE51_RS06535 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 62
Ralstonia solanacearum GMI1000 0.43 RS_RS01995 RNase adaptor protein RapZ 0.48 RS_RS12855 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.47 39
Ralstonia solanacearum PSI07 0.43 RPSI07_RS22155 RNase adapter RapZ 0.48 RPSI07_RS12065 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 81
Variovorax sp. SCN45 0.43 GFF2356 RNase adapter protein RapZ 0.47 GFF4798 tRNA dimethylallyltransferase (EC 2.5.1.75) — —
Ralstonia sp. UNC404CL21Col 0.43 ABZR87_RS07035 RNase adapter RapZ 0.49 ABZR87_RS00875 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 80
Ralstonia solanacearum UW163 0.43 UW163_RS02435 RNase adapter RapZ 0.48 UW163_RS08390 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Ralstonia solanacearum IBSBF1503 0.43 RALBFv3_RS11145 RNase adapter RapZ 0.48 RALBFv3_RS05235 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.40 67
Variovorax sp. OAS795 0.42 ABID97_RS23710 RNase adapter RapZ 0.45 ABID97_RS20320 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Rhodanobacter sp000427505 FW510-R12 0.42 LRK53_RS15720 RNase adapter RapZ 0.51 LRK53_RS09520 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 59
Dyella japonica UNC79MFTsu3.2 0.42 ABZR86_RS19800 RNase adapter RapZ 0.52 ABZR86_RS08370 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Rhodanobacter denitrificans FW104-10B01 0.42 LRK54_RS12860 RNase adapter RapZ 0.50 LRK54_RS00635 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 59
Rhodanobacter denitrificans MT42 0.42 LRK55_RS12560 RNase adapter RapZ 0.50 LRK55_RS00405 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.1658.1 hypothetical protein 0.49 Xcc-8004.3121.1 tRNA dimethylallyltransferase (EC 2.5.1.75) — —
Paraburkholderia bryophila 376MFSha3.1 0.42 H281DRAFT_01931 UPF0042 nucleotide-binding protein 0.48 H281DRAFT_04711 tRNA dimethylallyltransferase — —
Burkholderia phytofirmans PsJN 0.42 BPHYT_RS02885 glmZ(sRNA)-inactivating NTPase 0.47 BPHYT_RS03645 tRNA dimethylallyltransferase low > 109
Rhodanobacter sp. FW510-T8 0.41 OKGIIK_02250 rapZ RNase adapter RapZ 0.50 OKGIIK_06625 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Paraburkholderia sabiae LMG 24235 0.41 QEN71_RS01735 RNase adapter RapZ 0.49 QEN71_RS26440 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Acinetobacter radioresistens SK82 0.41 MPMX26_00547 RNase adapter protein RapZ 0.42 MPMX26_01208 tRNA dimethylallyltransferase — —
Acinetobacter baumannii LAC-4 0.41 RR41_RS16040 RNase adapter RapZ 0.41 RR41_RS07075 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 55
Cupriavidus basilensis FW507-4G11 0.41 RR42_RS02060 nucleotide-binding protein 0.46 RR42_RS17210 tRNA delta(2)-isopentenylpyrophosphate transferase — —
Paraburkholderia graminis OAS925 0.41 ABIE53_000714 UPF0042 nucleotide-binding protein 0.49 ABIE53_000875 tRNA dimethylallyltransferase low > 113
Castellaniella sp019104865 MT123 0.41 ABCV34_RS14330 RNase adapter RapZ 0.50 ABCV34_RS08790 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Dechlorosoma suillum PS 0.40 Dsui_0990 putative P-loop-containing kinase 0.49 Dsui_1552 tRNA isopentenyltransferase MiaA — —
Rhodospirillum rubrum S1H 0.39 Rru_A3448 Uncharacterized P-loop ATPase protein UPF0042 (NCBI) 0.21 Rru_A0466 tRNA isopentenyltransferase (NCBI) — —
Azospirillum brasilense Sp245 0.39 AZOBR_RS30485 nucleotide-binding protein 0.26 AZOBR_RS06550 tRNA delta(2)-isopentenylpyrophosphate transferase — —
Azospirillum sp. SherDot2 0.38 MPMX19_02622 Nucleotide-binding protein 0.27 MPMX19_01778 tRNA dimethylallyltransferase — —
Magnetospirillum magneticum AMB-1 0.37 AMB_RS22235 RNase adaptor protein RapZ 0.27 AMB_RS17735 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.83 4
Phaeobacter inhibens DSM 17395 0.35 PGA1_c01180 Predicted P-loop-containing kinase 0.20 PGA1_c14200 tRNA delta(2)-isopentenylpyrophosphate transferase MiaA — —
Desulfovibrio vulgaris Miyazaki F 0.35 DvMF_0424 hypothetical protein (RefSeq) 0.24 DvMF_0174 tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) — —
Desulfovibrio vulgaris Hildenborough JW710 0.33 DVU1631 conserved hypothetical protein (TIGR) 0.27 DVU1533 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (TIGR) — —
Mycobacterium tuberculosis H37Rv 0.33 Rv1421 Conserved protein 0.21 Rv2727c Probable tRNA delta(2)-isopentenylpyrophosphate transferase MiaA (IPP transferase) (isopentenyl-diphosphate:tRNA isopentenyltransferase) (iptase) (IPPT) — —
Dinoroseobacter shibae DFL-12 0.33 Dshi_0209 hypothetical protein (RefSeq) 0.17 Dshi_1492 tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) — —
Bifidobacterium breve UCC2003 0.33 BBR_RS15525 RNase adapter RapZ 0.26 BBR_RS16565 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Fusobacterium nucleatum SB010 0.32 HUW76_06700 RNase adapter RapZ 0.27 HUW76_01190 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 35
Sphingobium sp. HT1-2 0.32 GFF3820 RNase adapter protein RapZ 0.27 GFF2053 tRNA dimethylallyltransferase (EC 2.5.1.75) low > 95
Sphingomonas koreensis DSMZ 15582 0.31 Ga0059261_0917 Predicted P-loop-containing kinase 0.28 Ga0059261_0069 tRNA dimethylallyltransferase low > 68

Not shown: 0 genomes with orthologs for CSW01_12830 only; 21 genomes with orthologs for CSW01_01830 only