Conservation of cofitness between AO356_14785 and AO356_11990 in Pseudomonas fluorescens FW300-N2C3

92 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N2C3 1.0 AO356_14785 ABC-ATPase UvrA 1.0 AO356_11990 DNA helicase II 0.68 9
Pseudomonas fluorescens FW300-N2E2 1.00 Pf6N2E2_4888 Excinuclease ABC subunit A 0.99 Pf6N2E2_4273 ATP-dependent DNA helicase UvrD/PcrA 0.61 9
Pseudomonas sp. RS175 0.99 PFR28_03974 UvrABC system protein A 0.98 PFR28_04523 DNA helicase II low > 88
Pseudomonas fluorescens FW300-N1B4 0.98 Pf1N1B4_2611 Excinuclease ABC subunit A 0.94 Pf1N1B4_2005 ATP-dependent DNA helicase UvrD/PcrA 0.46 11
Pseudomonas fluorescens GW456-L13 0.97 PfGW456L13_1283 Excinuclease ABC subunit A 0.94 PfGW456L13_724 ATP-dependent DNA helicase UvrD/PcrA 0.61 2
Pseudomonas fluorescens FW300-N2E3 0.97 AO353_06855 ABC-ATPase UvrA 0.95 AO353_10055 DNA helicase II 0.51 16
Pseudomonas fluorescens SBW25 0.97 PFLU_RS27025 excinuclease ABC subunit UvrA 0.94 PFLU_RS29900 DNA helicase II low > 109
Pseudomonas fluorescens SBW25-INTG 0.97 PFLU_RS27025 excinuclease ABC subunit UvrA 0.94 PFLU_RS29900 DNA helicase II low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.95 Psyr_4520 Excinuclease ABC subunit A 0.88 Psyr_5065 ATP-dependent DNA helicase UvrD 0.26 37
Pseudomonas syringae pv. syringae B728a 0.95 Psyr_4520 Excinuclease ABC subunit A 0.88 Psyr_5065 ATP-dependent DNA helicase UvrD 0.18 79
Pseudomonas putida KT2440 0.93 PP_0483 excinuclease (uvrABC system protein A) 0.87 PP_5352 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex — —
Pseudomonas sp. S08-1 0.92 OH686_15495 excinuclease ABC subunit A 0.83 OH686_13045 ATP-dependent DNA helicase UvrD/PcrA low > 80
Pseudomonas stutzeri RCH2 0.90 Psest_3576 excinuclease ABC, A subunit 0.79 Psest_4098 Superfamily I DNA and RNA helicases 0.32 21
Escherichia coli Nissle 1917 0.77 ECOLIN_RS23485 excinuclease ABC subunit UvrA 0.64 ECOLIN_RS21885 DNA helicase II low > 55
Escherichia coli ECRC102 0.77 NIAGMN_10740 uvrA excinuclease ABC subunit UvrA 0.64 NIAGMN_12165 uvrD DNA helicase II — —
Escherichia coli ECRC99 0.77 KEDOAH_15255 uvrA excinuclease ABC subunit UvrA 0.64 KEDOAH_13740 uvrD DNA helicase II — —
Escherichia fergusonii Becca 0.77 EFB2_04533 UvrABC system protein A 0.64 EFB2_04824 DNA helicase II low > 86
Escherichia coli ECOR38 0.77 HEPCGN_11510 uvrA excinuclease ABC subunit UvrA 0.64 HEPCGN_13115 uvrD DNA helicase II low > 87
Escherichia coli ECRC101 0.77 MCAODC_03405 uvrA excinuclease ABC subunit UvrA 0.64 MCAODC_04915 uvrD DNA helicase II low > 87
Escherichia coli ECRC98 0.77 JDDGAC_16530 uvrA excinuclease ABC subunit UvrA 0.64 JDDGAC_18035 uvrD DNA helicase II low > 86
Rahnella sp. WP5 0.77 EX31_RS11990 excinuclease ABC subunit UvrA 0.62 EX31_RS15175 DNA helicase II low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.77 GFF1429 Excinuclease ABC subunit A 0.64 GFF241 ATP-dependent DNA helicase UvrD/PcrA 0.66 8
Escherichia coli BW25113 0.77 b4058 uvrA excinuclease ABC subunit A (NCBI) 0.64 b3813 uvrD DNA-dependent ATPase I and helicase II (NCBI) 0.63 6
Escherichia coli HS(pFamp)R (ATCC 700891) 0.77 OHPLBJKB_03983 UvrABC system protein A 0.64 OHPLBJKB_04237 DNA helicase II low > 73
Escherichia coli ECRC62 0.77 BNILDI_06380 uvrA excinuclease ABC subunit UvrA 0.64 BNILDI_04995 uvrD DNA helicase II low > 75
Escherichia coli ECOR27 0.77 NOLOHH_05145 uvrA excinuclease ABC subunit UvrA 0.64 NOLOHH_06540 uvrD DNA helicase II low > 75
Escherichia coli ECRC100 0.77 OKFHMN_12895 uvrA excinuclease ABC subunit UvrA 0.64 OKFHMN_14410 uvrD DNA helicase II low > 80
Escherichia coli BL21 0.77 ECD_03930 ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC 0.64 ECD_03689 DNA-dependent ATPase I and helicase II — —
Klebsiella michiganensis M5al 0.77 BWI76_RS01950 excinuclease ABC subunit A 0.64 BWI76_RS01220 DNA-dependent helicase II low > 92
Dickeya dadantii 3937 0.77 DDA3937_RS17605 excinuclease ABC subunit UvrA 0.63 DDA3937_RS19880 DNA helicase II low > 74
Dickeya dianthicola ME23 0.77 DZA65_RS18735 excinuclease ABC subunit UvrA 0.63 DZA65_RS21080 DNA helicase II low > 75
Dickeya dianthicola 67-19 0.77 HGI48_RS17610 excinuclease ABC subunit UvrA 0.63 HGI48_RS20035 DNA helicase II low > 71
Marinobacter adhaerens HP15 0.77 HP15_406 excinuclease ABC, ATPase subunit (A) 0.63 HP15_3403 UvrD/REP helicase 0.69 13
Enterobacter sp. TBS_079 0.77 MPMX20_00276 UvrABC system protein A 0.64 MPMX20_04463 DNA helicase II low > 85
Pectobacterium carotovorum WPP14 0.76 HER17_RS03550 excinuclease ABC subunit UvrA 0.63 HER17_RS01360 DNA helicase II low > 75
Kangiella aquimarina DSM 16071 0.76 B158DRAFT_0885 excinuclease ABC, A subunit 0.61 B158DRAFT_0238 Superfamily I DNA and RNA helicases 0.70 7
Alteromonas macleodii MIT1002 0.76 MIT1002_00179 Excinuclease ABC subunit A 0.62 MIT1002_00153 DNA helicase II low > 70
Enterobacter asburiae PDN3 0.76 EX28DRAFT_4246 excinuclease ABC, A subunit 0.64 EX28DRAFT_4482 ATP-dependent DNA helicase UvrD (EC 3.6.1.-) low > 76
Serratia liquefaciens MT49 0.76 IAI46_22905 excinuclease ABC subunit UvrA 0.63 IAI46_00735 DNA helicase II low > 86
Vibrio cholerae E7946 ATCC 55056 0.76 CSW01_02080 UvrABC system protein A 0.60 CSW01_01015 DNA helicase II 0.51 9
Pantoea sp. MT58 0.76 IAI47_17815 excinuclease ABC subunit UvrA 0.62 IAI47_18390 DNA helicase II low > 76
Shewanella amazonensis SB2B 0.75 Sama_0514 excinuclease ABC, A subunit (RefSeq) 0.61 Sama_0419 uvrD DNA-dependent helicase II (RefSeq) 0.41 21
Shewanella oneidensis MR-1 0.75 SO4030 uvrA excinuclease ABC, A subunit (NCBI ptt file) 0.62 SO0467 uvrD DNA helicase II (NCBI ptt file) 0.48 9
Shewanella sp. ANA-3 0.75 Shewana3_3592 excinuclease ABC subunit A (RefSeq) 0.62 Shewana3_0469 uvrD DNA-dependent helicase II (RefSeq) 0.52 14
Erwinia tracheiphila SCR3 0.75 LU632_RS23685 uvrA excinuclease ABC subunit UvrA 0.62 LU632_RS24125 uvrD DNA helicase II — —
Shewanella loihica PV-4 0.74 Shew_0533 excinuclease ABC, A subunit (RefSeq) 0.60 Shew_3385 uvrD DNA-dependent helicase II (RefSeq) 0.68 18
Dechlorosoma suillum PS 0.73 Dsui_1622 excinuclease ABC, A subunit 0.45 Dsui_1227 DNA/RNA helicase, superfamily I 0.87 10
Xanthomonas campestris pv. campestris strain 8004 0.72 Xcc-8004.3830.1 Excinuclease ABC subunit A 0.53 Xcc-8004.5114.1 ATP-dependent DNA helicase UvrD/PcrA 0.39 20
Dyella japonica UNC79MFTsu3.2 0.72 ABZR86_RS00910 excinuclease ABC subunit UvrA 0.54 ABZR86_RS16965 DNA helicase II 0.90 5
Rhodanobacter sp. FW510-T8 0.71 OKGIIK_03980 uvrA excinuclease ABC subunit UvrA 0.54 OKGIIK_16775 DNA helicase low > 52
Rhodanobacter denitrificans FW104-10B01 0.71 LRK54_RS15210 excinuclease ABC subunit UvrA 0.53 LRK54_RS06850 DNA helicase II 0.48 9
Rhodanobacter denitrificans MT42 0.71 LRK55_RS14925 excinuclease ABC subunit UvrA 0.53 LRK55_RS06595 DNA helicase II — —
Ralstonia sp. UNC404CL21Col 0.70 ABZR87_RS07120 excinuclease ABC subunit UvrA 0.45 ABZR87_RS15705 UvrD-helicase domain-containing protein low > 80
Herbaspirillum seropedicae SmR1 0.70 HSERO_RS19810 excinuclease ABC subunit A 0.44 HSERO_RS02160 DNA-dependent helicase 0.39 45
Ralstonia solanacearum GMI1000 0.70 RS_RS02080 excinuclease ABC subunit UvrA 0.45 RS_RS11220 DNA-dependent helicase low > 80
Ralstonia solanacearum PSI07 0.70 RPSI07_RS22065 excinuclease ABC subunit UvrA 0.44 RPSI07_RS13455 DNA-dependent helicase — —
Ralstonia solanacearum IBSBF1503 0.70 RALBFv3_RS11235 excinuclease ABC subunit UvrA 0.44 RALBFv3_RS03775 DNA-dependent helicase — —
Ralstonia solanacearum UW163 0.70 UW163_RS02345 excinuclease ABC subunit UvrA 0.44 UW163_RS09895 DNA-dependent helicase — —
Paraburkholderia bryophila 376MFSha3.1 0.69 H281DRAFT_01913 Excinuclease ABC subunit A 0.45 H281DRAFT_04469 ATP-dependent DNA helicase UvrD — —
Cupriavidus basilensis FW507-4G11 0.69 RR42_RS02145 excinuclease ABC subunit A 0.44 RR42_RS15090 DNA helicase 0.53 10
Paraburkholderia graminis OAS925 0.69 ABIE53_000732 excinuclease ABC subunit A 0.44 ABIE53_002936 DNA helicase-2/ATP-dependent DNA helicase PcrA — —
Burkholderia phytofirmans PsJN 0.69 BPHYT_RS02970 excinuclease ABC subunit A 0.45 BPHYT_RS13840 DNA-dependent helicase — —
Paraburkholderia sabiae LMG 24235 0.69 QEN71_RS01825 excinuclease ABC subunit UvrA 0.45 QEN71_RS05110 3'-5' exonuclease — —
Variovorax sp. SCN45 0.66 GFF4944 Excinuclease ABC subunit A 0.43 GFF4000 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.66 GFF2755 Excinuclease ABC subunit A 0.42 GFF5598 ATP-dependent DNA helicase UvrD/PcrA — —
Variovorax sp. OAS795 0.66 ABID97_RS04340 excinuclease ABC subunit UvrA 0.44 ABID97_RS09150 UvrD-helicase domain-containing protein 0.34 70
Acidovorax sp. GW101-3H11 0.65 Ac3H11_4387 Excinuclease ABC subunit A 0.42 Ac3H11_1660 ATP-dependent DNA helicase UvrD/PcrA low > 79
Rhodospirillum rubrum S1H 0.62 Rru_A1752 Excinuclease ABC, A subunit (NCBI) 0.34 Rru_A1536 UvrD/REP helicase (NCBI) 0.56 39
Castellaniella sp019104865 MT123 0.62 ABCV34_RS12715 excinuclease ABC subunit UvrA 0.42 ABCV34_RS05210 UvrD-helicase domain-containing protein low > 48
Brevundimonas sp. GW460-12-10-14-LB2 0.61 A4249_RS08575 excinuclease ABC subunit UvrA 0.33 A4249_RS04960 UvrD-helicase domain-containing protein low > 48
Azospirillum sp. SherDot2 0.61 MPMX19_01152 UvrABC system protein A 0.35 MPMX19_01610 ATP-dependent DNA helicase PcrA low > 112
Caulobacter crescentus NA1000 Δfur 0.60 CCNA_02673 excinuclease ABC subunit A 0.35 CCNA_01596 DNA helicase II low > 67
Caulobacter crescentus NA1000 0.60 CCNA_02673 excinuclease ABC subunit A 0.35 CCNA_01596 DNA helicase II 0.78 8
Azospirillum brasilense Sp245 0.60 AZOBR_RS15370 excinuclease ABC subunit A 0.36 AZOBR_RS12445 DNA helicase II 0.55 17
Magnetospirillum magneticum AMB-1 0.60 AMB_RS12410 excinuclease ABC subunit UvrA 0.33 AMB_RS03725 DNA helicase II low > 64
Sphingomonas koreensis DSMZ 15582 0.60 Ga0059261_0674 excinuclease ABC, A subunit 0.35 Ga0059261_0249 Superfamily I DNA and RNA helicases 0.95 2
Bosea sp. OAE506 0.59 ABIE41_RS15100 excinuclease ABC subunit UvrA 0.36 ABIE41_RS12730 UvrD-helicase domain-containing protein 0.40 47
Phaeobacter inhibens DSM 17395 0.58 PGA1_c17370 uvrABC system protein A 0.34 PGA1_c09450 DNA helicase II UvrD 0.50 12
Mycobacterium tuberculosis H37Rv 0.55 Rv1638 Probable excinuclease ABC (subunit A-DNA-binding ATPase) UvrA 0.34 Rv0949 Probable ATP-dependent DNA helicase II UvrD1 0.27 22
Fusobacterium nucleatum SB010 0.54 HUW76_06660 excinuclease ABC subunit UvrA 0.31 HUW76_07175 UvrD-helicase domain-containing protein low > 35
Synechococcus elongatus PCC 7942 0.54 Synpcc7942_0848 uvrA excinuclease ABC subunit A 0.30 Synpcc7942_2168 pcrA ATP-dependent DNA helicase, Rep family low > 38
Echinicola vietnamensis KMM 6221, DSM 17526 0.51 Echvi_1138 excinuclease ABC, A subunit 0.34 Echvi_0292 Superfamily I DNA and RNA helicases — —
Bacteroides ovatus ATCC 8483 0.51 BACOVA_03703 excinuclease ABC, A subunit 0.32 BACOVA_02365 UvrD/REP helicase — —
Bacteroides thetaiotaomicron VPI-5482 0.50 BT0578 excinuclease ABC subunit A (NCBI ptt file) 0.32 BT0657 ATP-dependent DNA helicase (NCBI ptt file) — —
Phocaeicola dorei CL03T12C01 0.50 ABI39_RS15330 excinuclease ABC subunit UvrA 0.32 ABI39_RS17735 UvrD-helicase domain-containing protein — —
Parabacteroides merdae CL09T00C40 0.50 HMPREF1078_RS00835 excinuclease ABC subunit UvrA 0.32 HMPREF1078_RS03560 3'-5' exonuclease low > 61
Phocaeicola vulgatus CL09T03C04 0.50 HMPREF1058_RS01735 excinuclease ABC subunit UvrA 0.32 HMPREF1058_RS03305 UvrD-helicase domain-containing protein 0.75 17
Pontibacter actiniarum KMM 6156, DSM 19842 0.50 CA264_18100 ABC-ATPase UvrA 0.34 CA264_07795 ATP-dependent DNA helicase — —
Bacteroides stercoris CC31F 0.49 HMPREF1181_RS15185 excinuclease ABC subunit UvrA 0.32 HMPREF1181_RS16505 UvrD-helicase domain-containing protein 0.44 50
Pedobacter sp. GW460-11-11-14-LB5 0.48 CA265_RS25080 excinuclease ABC subunit A 0.33 CA265_RS12980 ATP-dependent DNA helicase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.48 ABZR88_RS18670 excinuclease ABC subunit UvrA 0.32 ABZR88_RS07840 ATP-dependent helicase — —
Desulfovibrio vulgaris Hildenborough JW710 0.47 DVU1987 uvrA excinuclease ABC, A subunit (TIGR) 0.20 DVU0156 pcrA ATP-dependent DNA helicase, UvrD/REP family (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.46 DvMF_3050 excinuclease ABC, A subunit (RefSeq) 0.17 DvMF_1967 UvrD/REP helicase (RefSeq) 0.46 7

Not shown: 10 genomes with orthologs for AO356_14785 only; 1 genomes with orthologs for AO356_11990 only