Conservation of cofitness between AO356_14785 and AO356_00350 in Pseudomonas fluorescens FW300-N2C3

94 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N2C3 1.0 AO356_14785 ABC-ATPase UvrA 1.0 AO356_00350 excinuclease ABC subunit C 0.94 2
Pseudomonas fluorescens FW300-N2E2 1.00 Pf6N2E2_4888 Excinuclease ABC subunit A 0.96 Pf6N2E2_2021 Excinuclease ABC subunit C 0.84 2
Pseudomonas sp. RS175 0.99 PFR28_03974 UvrABC system protein A 0.95 PFR28_01411 UvrABC system protein C low > 88
Pseudomonas fluorescens FW300-N1B4 0.98 Pf1N1B4_2611 Excinuclease ABC subunit A 0.96 Pf1N1B4_5618 Excinuclease ABC subunit C 0.58 4
Pseudomonas fluorescens GW456-L13 0.97 PfGW456L13_1283 Excinuclease ABC subunit A 0.95 PfGW456L13_2886 Excinuclease ABC subunit C 0.61 3
Pseudomonas fluorescens FW300-N2E3 0.97 AO353_06855 ABC-ATPase UvrA 0.95 AO353_21835 excinuclease ABC subunit C 0.76 2
Pseudomonas simiae WCS417 0.97 PS417_25395 excinuclease ABC subunit A 0.94 PS417_10725 excinuclease ABC subunit C 0.56 6
Pseudomonas fluorescens SBW25-INTG 0.97 PFLU_RS27025 excinuclease ABC subunit UvrA 0.94 PFLU_RS10770 excinuclease ABC subunit UvrC 0.28 52
Pseudomonas fluorescens SBW25 0.97 PFLU_RS27025 excinuclease ABC subunit UvrA 0.94 PFLU_RS10770 excinuclease ABC subunit UvrC low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.95 Psyr_4520 Excinuclease ABC subunit A 0.89 Psyr_2896 Excinuclease ABC subunit C 0.87 2
Pseudomonas syringae pv. syringae B728a 0.95 Psyr_4520 Excinuclease ABC subunit A 0.89 Psyr_2896 Excinuclease ABC subunit C 0.86 2
Pseudomonas putida KT2440 0.93 PP_0483 excinuclease (uvrABC system protein A) 0.87 PP_4098 UvrABC system protein C — —
Pseudomonas sp. S08-1 0.92 OH686_15495 excinuclease ABC subunit A 0.84 OH686_00340 excinuclease ABC subunit C low > 80
Pseudomonas stutzeri RCH2 0.90 Psest_3576 excinuclease ABC, A subunit 0.86 Psest_2259 excinuclease ABC, C subunit 0.91 1
Escherichia coli Nissle 1917 0.77 ECOLIN_RS23485 excinuclease ABC subunit UvrA 0.52 ECOLIN_RS10895 excinuclease ABC subunit UvrC low > 55
Escherichia coli ECRC98 0.77 JDDGAC_16530 uvrA excinuclease ABC subunit UvrA 0.52 JDDGAC_00415 uvrC excinuclease ABC subunit UvrC low > 86
Escherichia fergusonii Becca 0.77 EFB2_04533 UvrABC system protein A 0.52 EFB2_02033 UvrABC system protein C low > 86
Escherichia coli ECRC99 0.77 KEDOAH_15255 uvrA excinuclease ABC subunit UvrA 0.52 KEDOAH_02265 uvrC excinuclease ABC subunit UvrC — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.77 GFF1429 Excinuclease ABC subunit A 0.51 GFF1700 Excinuclease ABC subunit C low > 78
Escherichia coli ECRC102 0.77 NIAGMN_10740 uvrA excinuclease ABC subunit UvrA 0.52 NIAGMN_02225 uvrC excinuclease ABC subunit UvrC — —
Escherichia coli ECOR38 0.77 HEPCGN_11510 uvrA excinuclease ABC subunit UvrA 0.52 HEPCGN_04180 uvrC excinuclease ABC subunit UvrC low > 87
Rahnella sp. WP5 0.77 EX31_RS11990 excinuclease ABC subunit UvrA 0.51 EX31_RS24150 excinuclease ABC subunit UvrC low > 89
Escherichia coli ECRC101 0.77 MCAODC_03405 uvrA excinuclease ABC subunit UvrA 0.52 MCAODC_19565 uvrC excinuclease ABC subunit UvrC low > 87
Escherichia coli ECOR27 0.77 NOLOHH_05145 uvrA excinuclease ABC subunit UvrA 0.52 NOLOHH_16445 uvrC excinuclease ABC subunit UvrC low > 75
Escherichia coli BW25113 0.77 b4058 uvrA excinuclease ABC subunit A (NCBI) 0.52 b1913 uvrC excinuclease ABC, subunit C; repair of UV damage to DNA (VIMSS) 0.84 2
Escherichia coli HS(pFamp)R (ATCC 700891) 0.77 OHPLBJKB_03983 UvrABC system protein A 0.52 OHPLBJKB_01816 UvrABC system protein C low > 73
Escherichia coli ECRC62 0.77 BNILDI_06380 uvrA excinuclease ABC subunit UvrA 0.52 BNILDI_15235 uvrC excinuclease ABC subunit UvrC low > 75
Escherichia coli ECRC100 0.77 OKFHMN_12895 uvrA excinuclease ABC subunit UvrA 0.52 OKFHMN_25825 uvrC excinuclease ABC subunit UvrC low > 80
Escherichia coli BL21 0.77 ECD_03930 ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC 0.52 ECD_01878 excinuclease UvrABC, endonuclease subunit 0.72 10
Dickeya dianthicola ME23 0.77 DZA65_RS18735 excinuclease ABC subunit UvrA 0.51 DZA65_RS14285 excinuclease ABC subunit UvrC low > 75
Dickeya dadantii 3937 0.77 DDA3937_RS17605 excinuclease ABC subunit UvrA 0.51 DDA3937_RS13700 excinuclease ABC subunit UvrC low > 74
Klebsiella michiganensis M5al 0.77 BWI76_RS01950 excinuclease ABC subunit A 0.52 BWI76_RS18330 excinuclease ABC subunit C 0.45 2
Dickeya dianthicola 67-19 0.77 HGI48_RS17610 excinuclease ABC subunit UvrA 0.51 HGI48_RS13795 excinuclease ABC subunit UvrC low > 71
Enterobacter sp. TBS_079 0.77 MPMX20_00276 UvrABC system protein A 0.51 MPMX20_02838 UvrABC system protein C 0.55 8
Marinobacter adhaerens HP15 0.77 HP15_406 excinuclease ABC, ATPase subunit (A) 0.57 HP15_1568 excinuclease ABC subunit C 0.85 4
Pectobacterium carotovorum WPP14 0.76 HER17_RS03550 excinuclease ABC subunit UvrA 0.51 HER17_RS07715 excinuclease ABC subunit UvrC low > 75
Kangiella aquimarina DSM 16071 0.76 B158DRAFT_0885 excinuclease ABC, A subunit 0.49 B158DRAFT_1273 Excinuclease ABC subunit C 0.92 2
Alteromonas macleodii MIT1002 0.76 MIT1002_00179 Excinuclease ABC subunit A 0.48 MIT1002_02153 Excinuclease ABC subunit C low > 70
Enterobacter asburiae PDN3 0.76 EX28DRAFT_4246 excinuclease ABC, A subunit 0.50 EX28DRAFT_0634 Excinuclease ABC subunit C low > 76
Serratia liquefaciens MT49 0.76 IAI46_22905 excinuclease ABC subunit UvrA 0.52 IAI46_09210 excinuclease ABC subunit UvrC 0.45 24
Vibrio cholerae E7946 ATCC 55056 0.76 CSW01_02080 UvrABC system protein A 0.51 CSW01_06140 excinuclease ABC subunit C 0.42 26
Pantoea sp. MT58 0.76 IAI47_17815 excinuclease ABC subunit UvrA 0.52 IAI47_12465 excinuclease ABC subunit UvrC low > 76
Shewanella amazonensis SB2B 0.75 Sama_0514 excinuclease ABC, A subunit (RefSeq) 0.51 Sama_1608 uvrC excinuclease ABC subunit C (RefSeq) 0.71 3
Shewanella oneidensis MR-1 0.75 SO4030 uvrA excinuclease ABC, A subunit (NCBI ptt file) 0.53 SO1861 uvrC excinuclease ABC, C subunit (NCBI ptt file) 0.72 2
Shewanella sp. ANA-3 0.75 Shewana3_3592 excinuclease ABC subunit A (RefSeq) 0.53 Shewana3_1609 uvrC excinuclease ABC subunit C (RefSeq) low > 73
Erwinia tracheiphila SCR3 0.75 LU632_RS23685 uvrA excinuclease ABC subunit UvrA 0.51 LU632_RS10195 uvrC excinuclease ABC subunit UvrC low > 74
Shewanella loihica PV-4 0.74 Shew_0533 excinuclease ABC, A subunit (RefSeq) 0.51 Shew_1825 uvrC excinuclease ABC subunit C (RefSeq) 0.95 1
Dechlorosoma suillum PS 0.73 Dsui_1622 excinuclease ABC, A subunit 0.48 Dsui_2470 excinuclease ABC, C subunit 0.87 11
Xanthomonas campestris pv. campestris strain 8004 0.72 Xcc-8004.3830.1 Excinuclease ABC subunit A 0.45 Xcc-8004.2477.1 Excinuclease ABC subunit C 0.50 4
Dyella japonica UNC79MFTsu3.2 0.72 ABZR86_RS00910 excinuclease ABC subunit UvrA 0.53 ABZR86_RS02245 excinuclease ABC subunit UvrC 0.92 3
Rhodanobacter sp. FW510-T8 0.71 OKGIIK_03980 uvrA excinuclease ABC subunit UvrA 0.54 OKGIIK_06930 uvrC excinuclease ABC subunit UvrC low > 52
Rhodanobacter denitrificans FW104-10B01 0.71 LRK54_RS15210 excinuclease ABC subunit UvrA 0.55 LRK54_RS00380 excinuclease ABC subunit UvrC low > 59
Rhodanobacter denitrificans MT42 0.71 LRK55_RS14925 excinuclease ABC subunit UvrA 0.55 LRK55_RS00120 excinuclease ABC subunit UvrC 0.53 35
Ralstonia sp. UNC404CL21Col 0.70 ABZR87_RS07120 excinuclease ABC subunit UvrA 0.43 ABZR87_RS10245 excinuclease ABC subunit UvrC 0.56 46
Herbaspirillum seropedicae SmR1 0.70 HSERO_RS19810 excinuclease ABC subunit A 0.46 HSERO_RS09690 excinuclease ABC subunit C 0.76 2
Ralstonia solanacearum PSI07 0.70 RPSI07_RS22065 excinuclease ABC subunit UvrA 0.44 RPSI07_RS18935 excinuclease ABC subunit UvrC low > 81
Ralstonia solanacearum GMI1000 0.70 RS_RS02080 excinuclease ABC subunit UvrA 0.43 RS_RS05305 excinuclease ABC subunit UvrC low > 80
Ralstonia solanacearum IBSBF1503 0.70 RALBFv3_RS11235 excinuclease ABC subunit UvrA 0.44 RALBFv3_RS14525 excinuclease ABC subunit UvrC low > 76
Ralstonia solanacearum UW163 0.70 UW163_RS02345 excinuclease ABC subunit UvrA 0.44 UW163_RS11990 excinuclease ABC subunit UvrC — —
Acinetobacter radioresistens SK82 0.69 MPMX26_02892 UvrABC system protein A 0.48 MPMX26_00228 UvrABC system protein C 0.72 2
Cupriavidus basilensis FW507-4G11 0.69 RR42_RS02145 excinuclease ABC subunit A 0.44 RR42_RS14000 excinuclease ABC subunit C 0.83 3
Variovorax sp. SCN45 0.66 GFF4944 Excinuclease ABC subunit A 0.43 GFF2859 Excinuclease ABC subunit C low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.66 GFF2755 Excinuclease ABC subunit A 0.41 GFF3847 Excinuclease ABC subunit C — —
Variovorax sp. OAS795 0.66 ABID97_RS04340 excinuclease ABC subunit UvrA 0.44 ABID97_RS10635 excinuclease ABC subunit UvrC 0.62 6
Acidovorax sp. GW101-3H11 0.65 Ac3H11_4387 Excinuclease ABC subunit A 0.40 Ac3H11_373 Excinuclease ABC subunit C low > 79
Rhodospirillum rubrum S1H 0.62 Rru_A1752 Excinuclease ABC, A subunit (NCBI) 0.37 Rru_A2220 Excinuclease ABC, C subunit (NCBI) low > 58
Castellaniella sp019104865 MT123 0.62 ABCV34_RS12715 excinuclease ABC subunit UvrA 0.42 ABCV34_RS06980 excinuclease ABC subunit UvrC low > 48
Brevundimonas sp. GW460-12-10-14-LB2 0.61 A4249_RS08575 excinuclease ABC subunit UvrA 0.34 A4249_RS01670 excinuclease ABC subunit UvrC low > 48
Rhodopseudomonas palustris CGA009 0.61 TX73_014580 excinuclease ABC subunit UvrA 0.38 TX73_006010 excinuclease ABC subunit UvrC 0.96 1
Azospirillum sp. SherDot2 0.61 MPMX19_01152 UvrABC system protein A 0.36 MPMX19_01070 UvrABC system protein C low > 112
Dinoroseobacter shibae DFL-12 0.61 Dshi_1809 excinuclease ABC, A subunit (RefSeq) 0.40 Dshi_0644 excinuclease ABC, C subunit (RefSeq) 0.91 1
Caulobacter crescentus NA1000 0.60 CCNA_02673 excinuclease ABC subunit A 0.33 CCNA_02975 excinuclease ABC subunit C 0.90 2
Caulobacter crescentus NA1000 Δfur 0.60 CCNA_02673 excinuclease ABC subunit A 0.33 CCNA_02975 excinuclease ABC subunit C low > 67
Azospirillum brasilense Sp245 0.60 AZOBR_RS15370 excinuclease ABC subunit A 0.38 AZOBR_RS08965 excinuclease ABC subunit C 0.47 36
Magnetospirillum magneticum AMB-1 0.60 AMB_RS12410 excinuclease ABC subunit UvrA 0.35 AMB_RS19240 UvrABC system protein C low > 64
Sphingomonas koreensis DSMZ 15582 0.60 Ga0059261_0674 excinuclease ABC, A subunit 0.37 Ga0059261_3186 Excinuclease ABC subunit C 0.84 5
Agrobacterium fabrum C58 0.59 Atu1513 ABC excinuclease subunit A 0.36 Atu1129 excinuclease ABC chain C 0.90 1
Rhizobium sp. OAE497 0.59 ABIE40_RS09360 excinuclease ABC subunit UvrA 0.34 ABIE40_RS06500 excinuclease ABC subunit UvrC — —
Sinorhizobium meliloti 1021 0.59 SMc01235 excinuclease ABC subunit A 0.36 SMc00602 excinuclease ABC subunit C 0.85 2
Phaeobacter inhibens DSM 17395 0.58 PGA1_c17370 uvrABC system protein A 0.39 PGA1_c02880 uvrABC system protein C 0.81 2
Mycobacterium tuberculosis H37Rv 0.55 Rv1638 Probable excinuclease ABC (subunit A-DNA-binding ATPase) UvrA 0.27 Rv1420 Probable excinuclease ABC (subunit C-nuclease) UvrC low > 58
Fusobacterium nucleatum SB010 0.54 HUW76_06660 excinuclease ABC subunit UvrA 0.25 HUW76_06695 excinuclease ABC subunit UvrC 0.99 1
Methanococcus maripaludis JJ 0.54 MMJJ_RS01235 excinuclease ABC subunit UvrA 0.26 MMJJ_RS01240 excinuclease ABC subunit UvrC low > 28
Synechococcus elongatus PCC 7942 0.54 Synpcc7942_0848 uvrA excinuclease ABC subunit A 0.27 Synpcc7942_1945 uvrC excinuclease ABC subunit C low > 38
Methanococcus maripaludis S2 0.53 MMP_RS03815 excinuclease ABC subunit UvrA 0.26 MMP_RS03810 excinuclease ABC subunit UvrC low > 25
Echinicola vietnamensis KMM 6221, DSM 17526 0.51 Echvi_1138 excinuclease ABC, A subunit 0.25 Echvi_0619 excinuclease ABC, C subunit 0.86 6
Bacteroides ovatus ATCC 8483 0.51 BACOVA_03703 excinuclease ABC, A subunit 0.24 BACOVA_01365 excinuclease ABC, C subunit low > 94
Bacteroides thetaiotaomicron VPI-5482 0.50 BT0578 excinuclease ABC subunit A (NCBI ptt file) 0.25 BT3266 excinuclease ABC subunit C (NCBI ptt file) 0.73 3
Phocaeicola dorei CL03T12C01 0.50 ABI39_RS15330 excinuclease ABC subunit UvrA 0.25 ABI39_RS05415 excinuclease ABC subunit UvrC low > 72
Parabacteroides merdae CL09T00C40 0.50 HMPREF1078_RS00835 excinuclease ABC subunit UvrA 0.25 HMPREF1078_RS06310 excinuclease ABC subunit UvrC low > 61
Phocaeicola vulgatus CL09T03C04 0.50 HMPREF1058_RS01735 excinuclease ABC subunit UvrA 0.25 HMPREF1058_RS11525 excinuclease ABC subunit UvrC 0.87 3
Pontibacter actiniarum KMM 6156, DSM 19842 0.50 CA264_18100 ABC-ATPase UvrA 0.23 CA264_16350 excinuclease ABC subunit C 0.47 24
Bacteroides stercoris CC31F 0.49 HMPREF1181_RS15185 excinuclease ABC subunit UvrA 0.25 HMPREF1181_RS02095 excinuclease ABC subunit UvrC low > 56
Pedobacter sp. GW460-11-11-14-LB5 0.48 CA265_RS25080 excinuclease ABC subunit A 0.23 CA265_RS18110 excinuclease ABC subunit C 0.92 3
Mucilaginibacter yixingensis YX-36 DSM 26809 0.48 ABZR88_RS18670 excinuclease ABC subunit UvrA 0.24 ABZR88_RS04150 excinuclease ABC subunit UvrC low > 71

Not shown: 8 genomes with orthologs for AO356_14785 only; 1 genomes with orthologs for AO356_00350 only