| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BW25113 | 1.0 | b3822 | recQ | ATP-dependent DNA helicase (NCBI) | 1.0 | b4058 | uvrA | excinuclease ABC subunit A (NCBI) | 0.37 | 6 |
| Escherichia coli Nissle 1917 | 1.00 | ECOLIN_RS21935 | | ATP-dependent DNA helicase RecQ | 1.00 | ECOLIN_RS23485 | | excinuclease ABC subunit UvrA | low | > 52 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_04229 | | ATP-dependent DNA helicase RecQ | 1.00 | OHPLBJKB_03983 | | UvrABC system protein A | low | > 73 |
| Escherichia fergusonii Becca | 1.00 | EFB2_04815 | | ATP-dependent DNA helicase RecQ | 1.00 | EFB2_04533 | | UvrABC system protein A | 0.54 | 39 |
| Escherichia coli ECOR38 | 1.00 | HEPCGN_13060 | recQ | ATP-dependent DNA helicase RecQ | 1.00 | HEPCGN_11510 | uvrA | excinuclease ABC subunit UvrA | low | > 85 |
| Escherichia coli ECRC101 | 1.00 | OKFHMN_14360 | recQ | ATP-dependent DNA helicase RecQ | 1.00 | OKFHMN_12895 | uvrA | excinuclease ABC subunit UvrA | — | — |
| Escherichia coli ECRC62 | 1.00 | BNILDI_05040 | recQ | ATP-dependent DNA helicase RecQ | 1.00 | BNILDI_06380 | uvrA | excinuclease ABC subunit UvrA | — | — |
| Escherichia coli ECRC101 | 1.00 | MCAODC_04865 | recQ | ATP-dependent DNA helicase RecQ | 1.00 | MCAODC_03405 | uvrA | excinuclease ABC subunit UvrA | — | — |
| Escherichia coli ECOR27 | 1.00 | NOLOHH_06490 | recQ | ATP-dependent DNA helicase RecQ | 1.00 | NOLOHH_05145 | uvrA | excinuclease ABC subunit UvrA | low | > 57 |
| Escherichia coli ECRC99 | 1.00 | KEDOAH_13790 | recQ | ATP-dependent DNA helicase RecQ | 1.00 | KEDOAH_15255 | uvrA | excinuclease ABC subunit UvrA | — | — |
| Escherichia coli ECRC102 | 1.00 | NIAGMN_12115 | recQ | ATP-dependent DNA helicase RecQ | 1.00 | NIAGMN_10740 | uvrA | excinuclease ABC subunit UvrA | — | — |
| Escherichia coli ECRC98 | 1.00 | JDDGAC_17985 | recQ | ATP-dependent DNA helicase RecQ | 1.00 | JDDGAC_16530 | uvrA | excinuclease ABC subunit UvrA | — | — |
| Escherichia coli BL21 | 1.00 | ECD_03701 | | ATP-dependent DNA helicase | 1.00 | ECD_03930 | | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC | 0.79 | 4 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.95 | GFF248 | | ATP-dependent DNA helicase RecQ | 0.97 | GFF1429 | | Excinuclease ABC subunit A | 0.55 | 16 |
| Enterobacter sp. TBS_079 | 0.93 | MPMX20_04458 | | ATP-dependent DNA helicase RecQ | 0.96 | MPMX20_00276 | | UvrABC system protein A | low | > 85 |
| Enterobacter asburiae PDN3 | 0.92 | EX28DRAFT_4487 | | ATP-dependent DNA helicase RecQ | 0.96 | EX28DRAFT_4246 | | excinuclease ABC, A subunit | low | > 76 |
| Klebsiella michiganensis M5al | 0.92 | BWI76_RS01245 | | DNA helicase RecQ | 0.96 | BWI76_RS01950 | | excinuclease ABC subunit A | low | > 92 |
| Pectobacterium carotovorum WPP14 | 0.82 | HER17_RS01395 | | ATP-dependent DNA helicase RecQ | 0.91 | HER17_RS03550 | | excinuclease ABC subunit UvrA | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.82 | LU632_RS24095 | recQ | ATP-dependent DNA helicase RecQ | 0.91 | LU632_RS23685 | uvrA | excinuclease ABC subunit UvrA | low | > 74 |
| Pantoea sp. MT58 | 0.82 | IAI47_18360 | | ATP-dependent DNA helicase RecQ | 0.91 | IAI47_17815 | | excinuclease ABC subunit UvrA | low | > 76 |
| Rahnella sp. WP5 | 0.81 | EX31_RS15210 | | ATP-dependent DNA helicase RecQ | 0.91 | EX31_RS11990 | | excinuclease ABC subunit UvrA | low | > 89 |
| Serratia liquefaciens MT49 | 0.81 | IAI46_00770 | | ATP-dependent DNA helicase RecQ | 0.92 | IAI46_22905 | | excinuclease ABC subunit UvrA | low | > 86 |
| Dickeya dianthicola ME23 | 0.80 | DZA65_RS21045 | | ATP-dependent DNA helicase RecQ | 0.91 | DZA65_RS18735 | | excinuclease ABC subunit UvrA | low | > 75 |
| Dickeya dianthicola 67-19 | 0.80 | HGI48_RS20005 | | ATP-dependent DNA helicase RecQ | 0.91 | HGI48_RS17610 | | excinuclease ABC subunit UvrA | low | > 71 |
| Dickeya dadantii 3937 | 0.80 | DDA3937_RS19850 | | ATP-dependent DNA helicase RecQ | 0.91 | DDA3937_RS17605 | | excinuclease ABC subunit UvrA | low | > 74 |
| Vibrio cholerae E7946 ATCC 55056 | 0.67 | CSW01_01045 | | DNA helicase RecQ | 0.82 | CSW01_02080 | | UvrABC system protein A | low | > 62 |
| Shewanella oneidensis MR-1 | 0.58 | SO4241 | recQ | ATP-dependent DNA helicase RecQ (NCBI ptt file) | 0.82 | SO4030 | uvrA | excinuclease ABC, A subunit (NCBI ptt file) | 0.58 | 7 |
| Shewanella sp. ANA-3 | 0.58 | Shewana3_3763 | | ATP-dependent DNA helicase RecQ (RefSeq) | 0.82 | Shewana3_3592 | | excinuclease ABC subunit A (RefSeq) | low | > 73 |
| Shewanella amazonensis SB2B | 0.58 | Sama_0333 | | ATP-dependent DNA helicase RecQ (RefSeq) | 0.82 | Sama_0514 | | excinuclease ABC, A subunit (RefSeq) | 0.65 | 9 |
| Shewanella loihica PV-4 | 0.57 | Shew_3474 | | ATP-dependent DNA helicase RecQ (RefSeq) | 0.82 | Shew_0533 | | excinuclease ABC, A subunit (RefSeq) | 0.80 | 2 |
| Alteromonas macleodii MIT1002 | 0.53 | MIT1002_00148 | | ATP-dependent DNA helicase RecQ | 0.80 | MIT1002_00179 | | Excinuclease ABC subunit A | low | > 70 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.45 | CA264_07560 | | DNA helicase RecQ | 0.50 | CA264_18100 | | ABC-ATPase UvrA | low | > 74 |
| Pseudomonas fluorescens GW456-L13 | 0.45 | PfGW456L13_4423 | | ATP-dependent DNA helicase RecQ | 0.78 | PfGW456L13_1283 | | Excinuclease ABC subunit A | 0.52 | 1 |
| Pseudomonas putida KT2440 | 0.45 | PP_4516 | | ATP-dependent DNA 3 | 0.77 | PP_0483 | | excinuclease (uvrABC system protein A) | — | — |
| Pseudomonas sp. RS175 | 0.45 | PFR28_00788 | | ATP-dependent DNA helicase RecQ | 0.78 | PFR28_03974 | | UvrABC system protein A | 0.26 | 11 |
| Herbaspirillum seropedicae SmR1 | 0.45 | HSERO_RS02465 | | ATP-dependent DNA helicase RecQ | 0.67 | HSERO_RS19810 | | excinuclease ABC subunit A | 0.62 | 3 |
| Pseudomonas fluorescens FW300-N2C3 | 0.45 | AO356_04050 | | ATP-dependent DNA helicase RecQ | 0.78 | AO356_14785 | | ABC-ATPase UvrA | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.45 | Pf6N2E2_2645 | | ATP-dependent DNA helicase RecQ | 0.78 | Pf6N2E2_4888 | | Excinuclease ABC subunit A | 0.27 | 27 |
| Pseudomonas fluorescens FW300-N1B4 | 0.45 | Pf1N1B4_3533 | | ATP-dependent DNA helicase RecQ | 0.78 | Pf1N1B4_2611 | | Excinuclease ABC subunit A | low | > 87 |
| Pseudomonas fluorescens SBW25 | 0.45 | PFLU_RS21920 | | DNA helicase RecQ | 0.78 | PFLU_RS27025 | | excinuclease ABC subunit UvrA | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.45 | PFLU_RS21920 | | DNA helicase RecQ | 0.78 | PFLU_RS27025 | | excinuclease ABC subunit UvrA | 0.42 | 2 |
| Pseudomonas simiae WCS417 | 0.45 | PS417_19950 | | ATP-dependent DNA helicase RecQ | 0.78 | PS417_25395 | | excinuclease ABC subunit A | 0.26 | 4 |
| Phocaeicola vulgatus CL09T03C04 | 0.44 | HMPREF1058_RS14585 | | DNA helicase RecQ | 0.48 | HMPREF1058_RS01735 | | excinuclease ABC subunit UvrA | low | > 67 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.44 | ABZR88_RS20865 | | DNA helicase RecQ | 0.48 | ABZR88_RS18670 | | excinuclease ABC subunit UvrA | low | > 71 |
| Rhodanobacter denitrificans FW104-10B01 | 0.44 | LRK54_RS13000 | | DNA helicase RecQ | 0.72 | LRK54_RS15210 | | excinuclease ABC subunit UvrA | low | > 59 |
| Pseudomonas fluorescens FW300-N2E3 | 0.44 | AO353_18430 | | ATP-dependent DNA helicase RecQ | 0.78 | AO353_06855 | | ABC-ATPase UvrA | 0.38 | 14 |
| Dechlorosoma suillum PS | 0.44 | Dsui_3092 | | ATP-dependent DNA helicase RecQ | 0.72 | Dsui_1622 | | excinuclease ABC, A subunit | low | > 51 |
| Pseudomonas stutzeri RCH2 | 0.44 | Psest_1869 | | ATP-dependent DNA helicase RecQ | 0.76 | Psest_3576 | | excinuclease ABC, A subunit | 0.59 | 5 |
| Phocaeicola dorei CL03T12C01 | 0.44 | ABI39_RS10235 | | DNA helicase RecQ | 0.48 | ABI39_RS15330 | | excinuclease ABC subunit UvrA | low | > 72 |
| Dyella japonica UNC79MFTsu3.2 | 0.44 | ABZR86_RS19925 | | DNA helicase RecQ | 0.73 | ABZR86_RS00910 | | excinuclease ABC subunit UvrA | low | > 74 |
| Pseudomonas syringae pv. syringae B728a | 0.44 | Psyr_3738 | | ATP-dependent DNA helicase RecQ | 0.78 | Psyr_4520 | | Excinuclease ABC subunit A | 0.36 | 8 |
| Rhodanobacter denitrificans MT42 | 0.44 | LRK55_RS12700 | | DNA helicase RecQ | 0.72 | LRK55_RS14925 | | excinuclease ABC subunit UvrA | low | > 63 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.44 | Psyr_3738 | | ATP-dependent DNA helicase RecQ | 0.78 | Psyr_4520 | | Excinuclease ABC subunit A | 0.58 | 2 |
| Marinobacter adhaerens HP15 | 0.44 | HP15_1718 | | ATP-dependent DNA helicase RecQ | 0.73 | HP15_406 | | excinuclease ABC, ATPase subunit (A) | low | > 73 |
| Agrobacterium fabrum C58 | 0.44 | Atu0061 | | ATP-dependent DNA helicase | 0.58 | Atu1513 | | ABC excinuclease subunit A | low | > 89 |
| Rhodanobacter sp. FW510-T8 | 0.44 | OKGIIK_02375 | recQ | DNA helicase RecQ | 0.72 | OKGIIK_03980 | uvrA | excinuclease ABC subunit UvrA | low | > 52 |
| Rhizobium sp. OAE497 | 0.44 | ABIE40_RS12745 | | DNA helicase RecQ | 0.59 | ABIE40_RS09360 | | excinuclease ABC subunit UvrA | 0.47 | 50 |
| Pseudomonas sp. S08-1 | 0.43 | OH686_20670 | | ATP-dependent DNA helicase RecQ | 0.77 | OH686_15495 | | excinuclease ABC subunit A | low | > 80 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.43 | Echvi_0784 | | ATP-dependent DNA helicase RecQ | 0.50 | Echvi_1138 | | excinuclease ABC, A subunit | 0.35 | 6 |
| Variovorax sp. OAS795 | 0.43 | ABID97_RS03395 | | DNA helicase RecQ | 0.65 | ABID97_RS04340 | | excinuclease ABC subunit UvrA | low | > 91 |
| Cupriavidus basilensis FW507-4G11 | 0.42 | RR42_RS19310 | | ATP-dependent DNA helicase RecQ | 0.67 | RR42_RS02145 | | excinuclease ABC subunit A | 0.52 | 11 |
| Azospirillum brasilense Sp245 | 0.42 | AZOBR_RS02840 | | ATP-dependent DNA helicase RecQ | 0.58 | AZOBR_RS15370 | | excinuclease ABC subunit A | 0.61 | 11 |
| Magnetospirillum magneticum AMB-1 | 0.42 | AMB_RS21505 | | DNA helicase RecQ | 0.58 | AMB_RS12410 | | excinuclease ABC subunit UvrA | low | > 64 |
| Sinorhizobium meliloti 1021 | 0.42 | SMc01566 | | ATP-dependent DNA helicase | 0.57 | SMc01235 | | excinuclease ABC subunit A | low | > 103 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.42 | Xcc-8004.1476.1 | | ATP-dependent DNA helicase RecQ | 0.73 | Xcc-8004.3830.1 | | Excinuclease ABC subunit A | low | > 74 |
| Bacteroides stercoris CC31F | 0.42 | HMPREF1181_RS14110 | | DNA helicase RecQ | 0.48 | HMPREF1181_RS15185 | | excinuclease ABC subunit UvrA | low | > 56 |
| Burkholderia phytofirmans PsJN | 0.42 | BPHYT_RS18145 | | ATP-dependent DNA helicase RecQ | 0.68 | BPHYT_RS02970 | | excinuclease ABC subunit A | low | > 109 |
| Ralstonia sp. UNC404CL21Col | 0.42 | ABZR87_RS02880 | | DNA helicase RecQ | 0.68 | ABZR87_RS07120 | | excinuclease ABC subunit UvrA | low | > 80 |
| Paraburkholderia sabiae LMG 24235 | 0.42 | QEN71_RS28295 | | DNA helicase RecQ | 0.68 | QEN71_RS01825 | | excinuclease ABC subunit UvrA | 0.40 | 32 |
| Phaeobacter inhibens DSM 17395 | 0.42 | PGA1_c31900 | | ATP-dependent DNA helicase RecQ | 0.58 | PGA1_c17370 | | uvrABC system protein A | low | > 62 |
| Paraburkholderia graminis OAS925 | 0.42 | ABIE53_003792 | | ATP-dependent DNA helicase RecQ | 0.68 | ABIE53_000732 | | excinuclease ABC subunit A | low | > 113 |
| Rhodopseudomonas palustris CGA009 | 0.42 | TX73_025080 | | DNA helicase RecQ | 0.60 | TX73_014580 | | excinuclease ABC subunit UvrA | low | > 86 |
| Azospirillum sp. SherDot2 | 0.42 | MPMX19_00123 | | ATP-dependent DNA helicase RecQ | 0.60 | MPMX19_01152 | | UvrABC system protein A | 0.44 | 41 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.41 | BT1848 | | ATP-dependent DNA helicase recQ (NCBI ptt file) | 0.49 | BT0578 | | excinuclease ABC subunit A (NCBI ptt file) | low | > 81 |
| Ralstonia solanacearum IBSBF1503 | 0.41 | RALBFv3_RS07220 | | DNA helicase RecQ | 0.67 | RALBFv3_RS11235 | | excinuclease ABC subunit UvrA | low | > 76 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.41 | H281DRAFT_06595 | | ATP-dependent DNA helicase RecQ | 0.68 | H281DRAFT_01913 | | Excinuclease ABC subunit A | — | — |
| Ralstonia solanacearum UW163 | 0.41 | UW163_RS06400 | | DNA helicase RecQ | 0.67 | UW163_RS02345 | | excinuclease ABC subunit UvrA | — | — |
| Bacteroides ovatus ATCC 8483 | 0.41 | BACOVA_04594 | | ATP-dependent DNA helicase RecQ | 0.49 | BACOVA_03703 | | excinuclease ABC, A subunit | low | > 94 |
| Dinoroseobacter shibae DFL-12 | 0.41 | Dshi_3334 | | ATP-dependent DNA helicase RecQ (RefSeq) | 0.60 | Dshi_1809 | | excinuclease ABC, A subunit (RefSeq) | 0.66 | 4 |
| Ralstonia solanacearum PSI07 | 0.41 | RPSI07_RS10025 | | DNA helicase RecQ | 0.67 | RPSI07_RS22065 | | excinuclease ABC subunit UvrA | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.41 | RS_RS15155 | | DNA helicase RecQ | 0.68 | RS_RS02080 | | excinuclease ABC subunit UvrA | low | > 80 |
| Castellaniella sp019104865 MT123 | 0.41 | ABCV34_RS07985 | | DNA helicase RecQ | 0.61 | ABCV34_RS12715 | | excinuclease ABC subunit UvrA | low | > 48 |
| Acidovorax sp. GW101-3H11 | 0.41 | Ac3H11_3308 | | ATP-dependent DNA helicase RecQ | 0.64 | Ac3H11_4387 | | Excinuclease ABC subunit A | 0.57 | 16 |
| Parabacteroides merdae CL09T00C40 | 0.41 | HMPREF1078_RS01195 | | DNA helicase RecQ | 0.48 | HMPREF1078_RS00835 | | excinuclease ABC subunit UvrA | low | > 61 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.40 | GFF1958 | | ATP-dependent DNA helicase RecQ | 0.66 | GFF2755 | | Excinuclease ABC subunit A | low | > 90 |
| Variovorax sp. SCN45 | 0.40 | GFF6415 | | ATP-dependent DNA helicase RecQ | 0.65 | GFF4944 | | Excinuclease ABC subunit A | low | > 127 |
| Rhodospirillum rubrum S1H | 0.40 | Rru_A0089 | | ATP-dependent DNA helicase RecQ (NCBI) | 0.60 | Rru_A1752 | | Excinuclease ABC, A subunit (NCBI) | low | > 58 |
| Bosea sp. OAE506 | 0.40 | ABIE41_RS04160 | | DNA helicase RecQ | 0.59 | ABIE41_RS15100 | | excinuclease ABC subunit UvrA | low | > 77 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.38 | CA265_RS08905 | | DNA helicase RecQ | 0.49 | CA265_RS25080 | | excinuclease ABC subunit A | low | > 88 |
| Sphingomonas koreensis DSMZ 15582 | 0.37 | Ga0059261_2261 | | ATP-dependent DNA helicase RecQ | 0.59 | Ga0059261_0674 | | excinuclease ABC, A subunit | 0.32 | 23 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.36 | A4249_RS14575 | | DNA helicase RecQ | 0.60 | A4249_RS08575 | | excinuclease ABC subunit UvrA | low | > 48 |
| Fusobacterium nucleatum SB010 | 0.34 | HUW76_07235 | | DNA helicase RecQ | 0.54 | HUW76_06660 | | excinuclease ABC subunit UvrA | low | > 35 |
| Bifidobacterium breve UCC2003 | 0.34 | BBR_RS13150 | | DNA helicase RecQ | 0.55 | BBR_RS15510 | | excinuclease ABC subunit UvrA | low | > 34 |
| Caulobacter crescentus NA1000 Δfur | 0.33 | CCNA_03578 | | ATP-dependent DNA helicase recQ | 0.61 | CCNA_02673 | | excinuclease ABC subunit A | low | > 67 |
| Caulobacter crescentus NA1000 | 0.33 | CCNA_03578 | | ATP-dependent DNA helicase recQ | 0.61 | CCNA_02673 | | excinuclease ABC subunit A | 0.64 | 14 |
Not shown: 1 genomes with orthologs for b3822 only; 8 genomes with orthologs for b4058 only